mRNA_Ecto-sp13_S_contig1172.1486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1172.1486.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE) HSP 1 Score: 579 bits (1492), Expect = 4.480e-205 Identity = 307/337 (91.10%), Postives = 311/337 (92.28%), Query Frame = 2
Query: 116 MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSTTTAAGEAATRQDNCCDDSAIGEDGDTEDMELTGRTLWDCTQVLWDLVADPRKDNTFTVRNKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVFANVRTSTSCRRGVPASDVGGGGDCGGVVAGTVNRGSDLPAATEVQAAAAREARVRVVALTWGEAEDIANARASPCNNHSGEGGRCSSGNXXXXXXXXXSSAFDVIVLSEVLYWPALNLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGGIPADLLALPTASTEDPGSAAVRAVVMVRLPLPR 1126
MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETS TTAAGE TRQD CCDD IGEDGD EDMELTGRTLWDCTQVLWDLVADPRKDN FTVR+KRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTV AN RTSTSCRRGVPASDV GGDCGGVVAGTVNRGSDLPAAT V AA REARV VVAL WGEAEDIANARASPCNNHSGEG RCS XXXXXXXX S AFDVIVLSEVLYWPAL+LLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVG IPADLLA+PTASTEDPGSAA+RAVVMVRLPL R
Sbjct: 1 MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSATTAAGEVGTRQDYCCDDRGIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTSTSCRRGVPASDVDVGGDCGGVVAGTVNRGSDLPAATGVPTAATREARVCVVALRWGEAEDIANARASPCNNHSGEGRRCSXXXXXXXXXXXESWAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGDIPADLLAMPTASTEDPGSAAIRAVVMVRLPLQR 337
BLAST of mRNA_Ecto-sp13_S_contig1172.1486.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI) HSP 1 Score: 522 bits (1344), Expect = 2.050e-182 Identity = 288/347 (83.00%), Postives = 297/347 (85.59%), Query Frame = 2
Query: 116 MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSTTTAAGEAATRQDNCCDDSAIGEDGDTEDMELTGRTLWDCTQVLWDLVADPRKDNTFTVRNKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVFANVRTSTSCRRGVPASDVGGGGDCGGVVAGT----------VNRGSDLPAATEVQAAAAREARVRVVALTWGEAEDIANARASPCNNHSGEGGRCSSGNXXXXXXXXXSSAFDVIVLSEVLYWPALNLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGGIPADLLALPTASTEDPGSAAVRAVVMVRLPLPR 1126
MPVVLSSRWGIEPV VGTACTDDGPLPLPFETSTTTAAGEAAT+QD CCDD AIGEDGD EDMELTGRTLWDCTQVLWDLVADPR+ NTFTVR+KRVIELGGGTGALSVGLARS AASVTCTDLPCHL I+STV AN RT+ SCRRGV SDVGGGG +RGSD PAATEV AAAAREARVRVVAL WGE EDIANARA P NNHSGE XXXXXXXXX SAFDVIVLSEVLYWPAL+LLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLR+CEASFEVG IPADLLALPTASTEDPGSAA+RAVVMVRLPL R
Sbjct: 1 MPVVLSSRWGIEPVTVGTACTDDGPLPLPFETSTTTAAGEAATQQDYCCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPREGNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIQSTVVANARTTASCRRGVLGSDVGGGGXXXXXXXXXXXXXXXXXXXTSRGSDPPAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGERXXXXXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRTCEASFEVGDIPADLLALPTASTEDPGSAAIRAVVMVRLPLQR 347
BLAST of mRNA_Ecto-sp13_S_contig1172.1486.1 vs. uniprot
Match: A0A7S2RJW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJW5_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.950e-21 Identity = 80/240 (33.33%), Postives = 109/240 (45.42%), Query Frame = 2
Query: 305 ELTGRTLWDCTQVLWDLVADPRKD-----NTFTVRN----KRVIELGGGTGALSVGLARSGAA-SVTCTDLPCHLVRIRSTVFANVRTSTSCRRGVPASDVGGGGDCGGVVAGTVNRGSDLPAATEVQAAAAREARVRVVALTWGEAEDIANARASPCNNHSGEGGRCSSGNXXXXXXXXXSSAFDVIVLSEVLYWPALNLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFL 994
++TG +W+C+ VLW+++ D R + + T+R KR+IELG GTG LSV LA +G A V TDLPCH+ +IR+ + N + + RR CG +P A AA L WGE E A FD +V E L+W ++L EDT E L RT+ LS PGT+++L YK R P REA+FL
Sbjct: 363 DITGTVVWECSSVLWNMLEDSRMEVNGGAASKTLRGLTEGKRIIELGAGTGLLSVALASAGGAREVLATDLPCHMPQIRANLALNAKRCSDRRR-----------QCG----------EAIPPAVSSTAA-----------LCWGEEEAAATL-----------------------------GHFDTVVACETLHWTGADILAEDTLELLCRTVQQLSCPGTRLLLAYKVRDPGREAKFL 541
BLAST of mRNA_Ecto-sp13_S_contig1172.1486.1 vs. uniprot
Match: A0A5J4YW68_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW68_PORPP) HSP 1 Score: 60.5 bits (145), Expect = 1.770e-6 Identity = 66/233 (28.33%), Postives = 90/233 (38.63%), Query Frame = 2
Query: 323 LWDCTQVLWDLVADPRKDNTFTVRNKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVFANVRTSTSCRRGVPASDVGGGGDCGGVVAGTVNRGSDLPAATEVQAAAAREARVRVVALTWGEA-----EDIANARASPCNNHSGEGGRCSSGNXXXXXXXXXSSAFDVIVLSEVLYWPALNLLQEDTREPLRRTLVGLSKPGT--KVILIYKERWPEREAEFLRS 1000
+WD L + V + R VR + V+ELG GTG +S+ LA G V CTD L IR+ V N + + +R V GD + S P A + +V + AL W E + + A N + FD +V E LYWP L++L D + LR L+ L G IL + R P REA F S
Sbjct: 39 VWDANWALAE-VLEQRVLRAAAVRQRCVLELGAGTGVMSIALAERGCL-VLCTDQTHVLPLIRANVARNGYSPDAAQRTV--------GD-------ELAASSSEPLLFVKHGADSENKKVVIGALDWNERSYGALDALRTALHGTAN----------------------AIPFDAVVCGETLYWPGLSILDPDPLDGLRELLLFLLCTGRARSAILSFVSRNPSREARFFNS 232 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1172.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1172.1486.1 >prot_Ecto-sp13_S_contig1172.1486.1 ID=prot_Ecto-sp13_S_contig1172.1486.1|Name=mRNA_Ecto-sp13_S_contig1172.1486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=338bp MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSTTTAAGEAATRQDNCCDback to top mRNA from alignment at Ecto-sp13_S_contig1172:13034..16317+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1172.1486.1 ID=mRNA_Ecto-sp13_S_contig1172.1486.1|Name=mRNA_Ecto-sp13_S_contig1172.1486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1172:13034..16317+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1172:13034..16317+ >mRNA_Ecto-sp13_S_contig1172.1486.1 ID=mRNA_Ecto-sp13_S_contig1172.1486.1|Name=mRNA_Ecto-sp13_S_contig1172.1486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1172:13034..16317+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |