mRNA_Ecto-sp13_S_contig11719.1485.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11719.1485.1
Unique NamemRNA_Ecto-sp13_S_contig11719.1485.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: D8LIV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV5_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 3.860e-170
Identity = 284/307 (92.51%), Postives = 292/307 (95.11%), Query Frame = 1
Query:    1 APTQSAGTPPGHDDLPLALSVCKDGAFESPLPLPAVPEKEAARASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LWQEVKPEHKAAVTQEDLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGWGRWGQAAFFQ 918
            AP++SAGTPPG D L LALSVCKD AFESPL LPAVPE+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LWQEVKP+ KA VTQEDLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENW+TQRMEEIHYHKDMDKYKLSTMPNMPP RASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVNVFKAE+VLSFEKFVDLTSKTA+ARLQKDYPGGNLGLTRRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWE+FGASGWGRWGQAAFFQ
Sbjct:  614 APSESAGTPPGPDGLSLALSVCKDRAFESPLRLPAVPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWQEVKPKQKAVVTQEDLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWNTQRMEEIHYHKDMDKYKLSTMPNMPPERASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVNVFKAEEVLSFEKFVDLTSKTAKARLQKDYPGGNLGLTRRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEKFGASGWGRWGQAAFFQ 920          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A6H5JD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD01_9PHAE)

HSP 1 Score: 506 bits (1304), Expect = 1.790e-169
Identity = 269/298 (90.27%), Postives = 277/298 (92.95%), Query Frame = 1
Query:   28 PGHDDLPLALSVCKDGAFESPLPLPAVPEKEAARASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWQEVKPEHKAAVTQEDLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGWGRWGQAAFFQR 921
            P  D LP+ALSVCKDGAFESPLPLPAV E+EAARA+            XXXXXXXXXXXXXXXXXXXX LWQEVKPE KA VTQ DL+SFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDP ERLLSCFLDKVVHRRSYSVNVFKAE+VLSFEKFVDLTSKTA+ARLQ+DYPGGNLGLTRRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLW+EFGASGWGRWGQAAFFQR
Sbjct:  702 PSEDGLPVALSVCKDGAFESPLPLPAVREEEAARAAQGAGASYSARRSXXXXXXXXXXXXXXXXXXXX-LWQEVKPEQKAVVTQNDLDSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPAERLLSCFLDKVVHRRSYSVNVFKAEEVLSFEKFVDLTSKTAKARLQQDYPGGNLGLTRRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWKEFGASGWGRWGQAAFFQR 998          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: F0Y5E9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5E9_AURAN)

HSP 1 Score: 158 bits (400), Expect = 1.710e-42
Identity = 87/218 (39.91%), Postives = 129/218 (59.17%), Query Frame = 1
Query:  253 PEHKAAVTQEDLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRR-----SYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHWRPQLFF-GLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGW 888
            P    +  +++L   QH    +V+HK+L  A+PKVACT+   LF RL+G EN + +   + H+ +D   +       M    A+A++NDPTWTK  F RDP ERLLS +LDK  + +     SY+V +FK +  ++F  FVD  +   + R + D      GL   +NPHWRPQ F   ++KFLP ++FVG F H+ +H+E+ L+  GLWE +GA+GW
Sbjct:   25 PRAPLSYREQELRYAQHHMYVDVKHKLLYCAVPKVACTEFMRLFFRLKG-ENQNQRWKGDPHFRQDKPLFNKI----MNVTTATALMNDPTWTKFAFWRDPAERLLSAYLDKFANGKRYSTGSYAVRIFKDKH-MNFSGFVDRIASKNRVRGKPD------GLHPNTNPHWRPQRFMCNMEKFLPAYNFVGSFDHLGDHAEKLLRALGLWEAYGAAGW 230          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A7S3JPI6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPI6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.290e-36
Identity = 80/218 (36.70%), Postives = 123/218 (56.42%), Query Frame = 1
Query:  283 DLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVV--HR--RSYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHWRPQLFF-GLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGWGRWGQAAFFQR 921
            +L    H    +  HK++   IPKVACT+    F RL+G      + + + H+  D     +     +    A+AI+NDP +TK V+ RDP +RL S ++DK    HR   SY V +++ ++ L+F +FVD+        L+K    GN GL  ++NPHWRPQ +   L+KFLP ++F+G F H+ EH++  L+  GLWE++G SGW R  +   F+R
Sbjct:   61 ELRYAAHHAFIDKRHKLVYCGIPKVACTEFFRFFFRLKGEHRDRGRWLGDPHFRSDRPLLSM-----LSTDEATAIMNDPAYTKFVYFRDPVDRLRSAWMDKFHNWHRYTMSYKVKLYQNKN-LTFSEFVDIL-------LEKPSRNGNRGLGPKTNPHWRPQRYLCNLEKFLPLYNFIGSFSHLFEHNKRMLQALGLWEQYGQSGWSRPQRVKRFRR 265          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A835YWJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.410e-32
Identity = 90/300 (30.00%), Postives = 128/300 (42.67%), Query Frame = 1
Query:  250 KPEHKAAVTQEDLNSFQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLS----------------------------------------------------CFLDKVVHRRSYSVNVFKAEDVLSFEKFVDLTS-----------KTAQARLQKDYPGG-------------NLGLTRRS---------NPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGWGR 894
            +P      T  D+ + QHFWL N  HK+L +AIPKVACTQ+  LFLR   + +WDT  M  IH+H    + +  T   +   + +AI+NDP WT+ V LR+P  R+LS                                                     +LDK V   SY   V   +  +SF +FV++             ++   R                      + L RR          +PH RPQ  F +DKFLPY +F+ ++  VQ H  E L++ G+WE++GASGWGR
Sbjct:  512 QPAAPVTATDADVVALQHFWLVNKRHKLLYLAIPKVACTQMIQLFLRAVNATDWDTDVMANIHFHSGNKRIRAKTQ--VTAAQLTAIMNDPQWTRAVVLREPRRRVLSLPCVRALFRPLRYPDKLVCGLLSPRRLPRVLTIVTNVRALWRLRDQLTQLPCAYLDKYVLHGSYGDRVRADKRYVSFHEFVEVXXXXXXXXXXXXXESTPVRXXXXXXXXXXXXXXXXXQVDTGMRLARRRTGAHPLSTVDPHHRPQALF-MDKFLPYMNFIAEYTQVQHHVREMLEKVGMWEQYGASGWGR 808          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A7S2WJM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJM7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.520e-31
Identity = 76/199 (38.19%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  310 LANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKV---VHRRS-YSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHWRPQL-FFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGWG 891
            + +++H+VL+ AIPKVA ++   LFLRLQG   W  +   ++          L+++  + P RA  IL DP++ KGVF RDP  RLLSC+LDK     HR + YS+ +F    +LSF +F           L+K    G        N HWRPQ     +++    + F G+F+ + EH   FL +AGLW+EFG SGWG
Sbjct:  124 IVDLKHRVLICAIPKVASSEWKKLFLRLQGDPEWAAEPWWKMR--------NLTSLYKLGPARAMEILQDPSFIKGVFFRDPFSRLLSCYLDKFSAGTHRANKYSLKIFGDNHLLSFPEF-----------LKKVTAAG-----APMNVHWRPQADICQIEELFHLYSFFGNFERLPEHGRAFLTQAGLWKEFGESGWG 298          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A7S0TAN7_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAN7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.500e-28
Identity = 68/195 (34.87%), Postives = 105/195 (53.85%), Query Frame = 1
Query:  325 HKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVH------RRSYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHWRPQLFF-GLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGW 888
            HK+++ A+PKVACT++  L  RL G   W      + H+  D   ++  ++       A+ ++ND +WTK +FLRDP  RL S +LDK V         +Y + +F   + LSFE F    +     R   D      GL   +N HW+PQ +    +KF   + FVG +++++EH+E  L+  GLW++FGASGW
Sbjct:  110 HKLVLCAVPKVACTELIKLVYRLSGDPRW----RRDPHFRGDSPIFRKLSL-----AEANEMMNDDSWTKVIFLRDPLSRLASAYLDKFVQSPKRGIHANYGIRLFG--ESLSFEAFARRVASNNTDRASHD------GLHLGTNLHWKPQRYICSFEKFAHLYHFVGRYENIREHAESLLRALGLWDDFGASGW 287          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A7S3LEC1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.790e-26
Identity = 68/196 (34.69%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  325 HKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLT--------RRSNPHWRPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGW 888
            HK+L   IPKV CT    LF R+ G ++W  +  + I +H   +   L+ + +  P  A  +L DP+WT+ +F RDP ERLLS +LDKV+H     V V    +  S +  +       Q  L K  P   L           +  +PHWRPQ     D + PY +FVG   H+++ ++  L++ G W+EFGA GW
Sbjct:  145 HKLLFFTIPKVGCTVFKQLFRRMYGYQSWK-EHNDFIPHHPMSNG--LNYLYHYKPREAERMLTDPSWTRAIFFRDPKERLLSAYLDKVLHENGKYVRVHCCGNNPSLKMLLH-----CQVLLDK-LPNPLLTFADFLEKIVLQCKDPHWRPQAHRLPDLYWPYINFVGHMDHIEQDTKRLLQKIGAWDEFGAHGW 331          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A7S2VCG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VCG1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.970e-24
Identity = 66/196 (33.67%), Postives = 101/196 (51.53%), Query Frame = 1
Query:  325 HKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVN-----VFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRS--NPHWRPQLFFGLDKFLPYFDFVGDFKH-VQEHSEEFLKRAGLWEEFGASGW 888
            HK+L    PKVACT    LF R++G  +W  +     H         L+ + +  P +A  +L DP+WT+ +F+R+P ERLLS +LDKVV   SY +      V   E++L  + F  + S +   R         LG   +   +PHWRPQ      K+  Y +FVG   H V++ ++  L + G W+++GA+GW
Sbjct:   63 HKLLFWTTPKVACTVWKKLFRRMEGYSDWQVENDNLPHSPYTNG---LNYLYHYKPAQADLMLTDPSWTRAIFVREPKERLLSAYLDKVVGNHSYYLRKHCCKVTTIEEILQCDVFHRIPSPSPSLRDPAVSFTEFLGPVYKECVDPHWRPQAKRMPAKYWSYINFVGHLDHGVEKDAQRLLTQIGAWDDYGANGW 255          
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Match: A0A7S2XMP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMP6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.090e-22
Identity = 67/196 (34.18%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  295 FQHFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKDMDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHRRSYSVNVFKA---------EDVLSFEKFVDLT--------SKTAQARLQKDYPGGNLGLTRRSNPHWRPQLFF-GLDKFLPYFDFVGDFKHVQE 828
            F+H      E K++   IPKV  T+    F   QG++++    +   H   D  +Y +S++      +A  +L DPTWTK VFLR+P ERLLS +LDK+   + ++  VFK            VL+FE+F+DL         ++ A  R          GL   ++PHW+PQ+   GLD  LP F+F+G F H+ E
Sbjct:  180 FRHHLFFIPEAKLVFCGIPKVGITEWIKFFRYKQGAKDY----LSSPHSKSDRMEYFMSSLSRE---KAKEVLQDPTWTKAVFLRNPAERLLSSYLDKIKGPQGFTQRVFKIGSMDDPKPKRKVLTFEEFIDLVVLDDDDNPNRCADPR----------GLHSCTDPHWKPQVMTCGLDHLLPQFNFIGSFDHISE 358          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11719.1485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIV5_ECTSI3.860e-17092.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD01_9PHAE1.790e-16990.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y5E9_AURAN1.710e-4239.91Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3JPI6_9STRA3.290e-3636.70Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835YWJ0_9STRA2.410e-3230.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WJM7_9STRA7.520e-3138.19Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0TAN7_9STRA1.500e-2834.87Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A7S3LEC1_9STRA6.790e-2634.69Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2VCG1_9STRA4.970e-2433.67Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2XMP6_9STRA4.090e-2234.18Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11719contigEcto-sp13_S_contig11719:102..4836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score503.1
Seed ortholog evalue9.5e-140
Seed eggNOG ortholog2880.D8LIV5
Model size921
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2E1X5@1,2S96K@2759
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-20_001700.1
Cds size921
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11719.1485.1prot_Ecto-sp13_S_contig11719.1485.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11719 102..4836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462617.2020664-CDS-Ecto-sp13_S_contig11719:101..4551681462617.2020664-CDS-Ecto-sp13_S_contig11719:101..455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11719 102..455 +
1681462617.2123556-CDS-Ecto-sp13_S_contig11719:980..10581681462617.2123556-CDS-Ecto-sp13_S_contig11719:980..1058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11719 981..1058 +
1681462617.2229917-CDS-Ecto-sp13_S_contig11719:2125..22951681462617.2229917-CDS-Ecto-sp13_S_contig11719:2125..2295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11719 2126..2295 +
1681462617.2348683-CDS-Ecto-sp13_S_contig11719:3052..31391681462617.2348683-CDS-Ecto-sp13_S_contig11719:3052..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11719 3053..3139 +
1681462617.24695-CDS-Ecto-sp13_S_contig11719:3701..37711681462617.24695-CDS-Ecto-sp13_S_contig11719:3701..3771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11719 3702..3771 +
1681462617.2641337-CDS-Ecto-sp13_S_contig11719:4674..48361681462617.2641337-CDS-Ecto-sp13_S_contig11719:4674..4836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11719 4675..4836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11719.1485.1

>prot_Ecto-sp13_S_contig11719.1485.1 ID=prot_Ecto-sp13_S_contig11719.1485.1|Name=mRNA_Ecto-sp13_S_contig11719.1485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=307bp
APTQSAGTPPGHDDLPLALSVCKDGAFESPLPLPAVPEKEAARASAAAGA
SFFARRSPDGGGGADGGLLSTLPPPPPPLWQEVKPEHKAAVTQEDLNSFQ
HFWLANVEHKVLMVAIPKVACTQVHALFLRLQGSENWDTQRMEEIHYHKD
MDKYKLSTMPNMPPGRASAILNDPTWTKGVFLRDPTERLLSCFLDKVVHR
RSYSVNVFKAEDVLSFEKFVDLTSKTAQARLQKDYPGGNLGLTRRSNPHW
RPQLFFGLDKFLPYFDFVGDFKHVQEHSEEFLKRAGLWEEFGASGWGRWG
QAAFFQR
back to top

mRNA from alignment at Ecto-sp13_S_contig11719:102..4836+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11719.1485.1 ID=mRNA_Ecto-sp13_S_contig11719.1485.1|Name=mRNA_Ecto-sp13_S_contig11719.1485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11719:102..4836+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCAACTCAGTCCGCGGGGACGCCCCCCGGGCACGATGACCTACCCTT AGCGTTGTCCGTCTGCAAGGACGGAGCATTTGAGTCTCCGTTGCCGCTTC CTGCGGTACCGGAGAAGGAAGCCGCTCGTGCTTCGGCAGCTGCGGGTGCT TCCTTTTTCGCACGGCGTTCGCCCGACGGAGGGGGGGGCGCGGATGGGGG CCTGCTATCTACGTTGCCCCCGCCGCCGCCGCCGTTGTGGCAGGAGGTAA AGCCCGAGCATAAGGCGGCGGTCACGCAGGAAGACCTGAACAGCTTCCAG CACTTTTGGCTCGCGAACGTGGAGCATAAGGTGCTCATGGTGGCCATCCC GAAGGTGTGACGATTGGTTGAGATCATTTTTTTGTTTGTTTGATGGATGA GCTATTTTGTTACAGGGTGTTTAGGCGTTCGTACTTCCGTTCTTCTGTTC CTACCGTCTGCCTGTTGCATACACGAACAACGCTTCGTCTCCGACGGGCA CTCGTATGTTCGTGAACCCATGCGTGCACGTGTGTTTATGTTAGGGCGCT GCTCGTGTTGGTCAGTCTGCCTAGGTTATCTACCGTTGATCCTCGTTGTC TGGCCGCTTTGGGAGGGCTGTCTTGCTGTCTGCGTGTTGGATGCTAGGTA GGCGTTTTCGCCGTGTGGCGTAACGTCTGTCCTTTCGGTGGACGCTGACA CCACGTGGAATCCTGCTCGCTAGCGCCATGTCCTTCTGGTCTGCCGTGCC TAGCCCCCCTCAAGCCTGCGCTCACGTTGCGGCACCCTCTCACCGAAGTG TGTCGTCACGTTGTCACCGCCCACCTACCCTCGCTCAACCCCCCCCCACC CCCCCCCTGTTCATTTGCTCGTGTCTCAGGTGGCGTGCACCCAGGTCCAC GCTTTGTTCCTCCGCCTGCAGGGATCCGAGAACTGGGACACTCAGCGCAT GGAAGAAGTGCGTGCGTGCGGATTTTTTTTTAACATGTCGATATGTGTGT GTTTTTTTGTGTGTGTGTTGTTCGTCCGATCTAGTCCGGGCCCGGGTCTC TACGTCTCGCGGTGTATATGTGTAACCCTTGCCGTATAATCCGAGTATAT TAAACGAACCAGCCGGCGTCCAAACAGGATGAACGTGAATACTGGAGTTA TTGTTTGTGGTTTCATCACCATCGCCCCTGCAACGCCGGCCTTCGATTTT GAATGCGGTGAAGATGAGGGGCGTCGAACAAAGTGACTAACCAATCACCT AGTAGGCGGACAGTGTGGGGCCAAATCTGGGCGCGATGGCGTGTTCCGTG GTCGTGTATGGATCGTGCACGCCGTTGTGTGTTTCTTTGGTCCCTTCCCT CCCACCCCCCTCCCCCCGGTCGCTTCTATTTACTCCCGCCTTTGAGTCCG CACCCTTGATCGTAGGGTTCATACCGGGGCCAACCTGCTTTTTCCACTTT TTCCTTTGCTCAAAAAATTTTCGCACGGTTTGAAACTTTCTGTCCTCCTC GGGGCCTACGTTGTCCTACCTTTACTTCTTTTCATCTCTCGTTTTCTCTT GGTCGTGCCTCAGATTCGAAAGCTGCTTCAGAATAGTATTTTTTCTCGTG CAGAATACCGGCCGAACACCGTATCGGAATGTTGCCGAAGAATGATGCAC GCAGCATGATTTGAATGCTTGCCTATGCATCGGCGTGTCGACTTCCGCCT CCTCCTGGGCTGTTTGGCCAGTCCCGTGGGTAGTCACGTCACCTCTGGTA TGTTCGGCAGTCGCGGGATAAAACGATCGCCATCCTACAGAGATAACCGA GGGTCACCGGAGTTTGAGAAGGACGGAGGGTCGGATCAGTTCGGCAAGAT ATTTCACTTCCTCTAGAACGTTTTCAGAAAATTCAAGAGCGCGCGGCGAT GTTTCTAGTAAGTCGAGTCACACACACTGCCGTGCTCTCGCCACTCGAGG GACCCTCAACCAACAGTCGAGCGAGTGAAGGGAGTCAACCACCCCCCCCC CCCCCCCTTTGTTTGTATTTCAAGATCCATTATCACAAAGACATGGACAA GTACAAGCTGAGCACTATGCCGAACATGCCTCCCGGGAGGGCCTCCGCGA TCCTCAACGACCCCACCTGGACGAAGGGGGTGTTCTTGAGGGACCCCACG GAGCGGCTGCTCTCCTGCTTCCTGGACAAGGTCGTGCACAGAAGGTGATT AGTGGTAGCGGCACTGGGACGTTTTGCGAGACTCATTGTTTGTTGTTTAG GGACACATAGAGTGACGAGGTCGTGCGCAGGAGGTGGTTGATGGTGACAG CGGTAGGGAATTTTTCGAGACTCATTGTTTGTTGTTTAGGGACACATAGA GTGACGAGGTCGTGCGCAGGAGGTGGTTGATGGTGACAGCGGTAGGGAAT TTTTCGAGACTCAGTTGTTGTTTAGGGCATCGTGAGATTGTTGCGGCGTC GTCGTTCACGGTTTCATCGGGGGCACGGGGTTGTGCATCCTGGGTCCTAG CCTTCTTGTGTGGTTCGCTTTGATGTGTTGTTTCGTTGTGTGTGTGTACC AACGCTGGGTTGAGGGGGCGATTTGCATTGACACAGCCGCAGAAACGAGC CGCCCGCGCAACAGTGGCCATTCGTGCGCTTGCTGGCACTTCCTGGTGCT GTATGCTTGATTTTTGACAACATGTTTGTAACGCCAAACAAGGGGCTGAC AGAAGCGAACGAACGCTCTAGTTTGTGTTTGGTTCTTCGTCCCCGTGGCT CATTTAGTGTCGCATCACCTGCCCTGCACGCACTGTTTACAGTTTGATCT TTTGCTGGACTGGCTATGGAAGCACAGGCGCCAGATGATCACGTCTACAG CAGTAGTTTCAACCTGAGCTATGGTCCACAATACCCCTAGCATCATCAAC AACAACAACGATCATTGTGTGTTTTTTTGCCTTTTTTCGTTCTTGTGACA GGTCGTACAGCGTCAACGTCTTCAAAGCGGAAGACGTGCTTTCGTTCGAG AAGTTTGTCGACCTCACCTCCAAGACTGCGCAAGCCAGGTACATTCATTT AGTCACGTTTCGTACAGAGCAGAGCCAGTTATTCCCCCCCGTCCTCCTCC CGCCAGTACGAGGTTAACGGTCAAACGACTACGGCATGCACTGCTACGAG TATACCCCCCGCGAAGTTCTTCACGCCATGGATTGGTCCACTCTTCAGGG TTTGTTTCTTACAATAAGACATTTTGGCATTCCGGCGCTGCGGGCAGCTT TTGCTATCGGTGCCCGAAAACACCGGCTACGCTAGTGAGGTAGGGTCCTC GCTAGCCACTTTCTCTCCGTTTACTTATTTGCCTTCTCCCGCTGCTGCTG CTTCCTGCGAGCACGACAGCCAGCACAGAGGGGCGGAAGGGGCAGCGCAC GACGGACAAGTATTCTCTCGTGTTGTCTGCCTAGCGCACATTTCCGGTCC GGCGCGTCCCTTCAAAACCACACCGCTCGTGTCGCAGGCAAATTGTCCTT CGAAGCAGCGAGAGGCGAAGGGCTTCGGGACCAACGACGGCTGACACTTC TTGCCATGCCTGGGTATGCTCTCGCCTCTGCTCGGCTTGCTTGTTCGCAG GCTTCAGAAGGACTACCCCGGAGGCAACCTTGGCCTGACCAGACGAAGCA ACCCGCATTGGAGACCCCAGGTGAACATTGCTCCTGAGTTGGCGGGCGGG CGGTTATTTGCACCACACTGAGGTGCGCGCTCCGAGGGTCGGTCTACTGT AGGAGGTGTCAATGTAGGTGGTACGATTTTCACGGGGTTGTTTACCGCGT GGTGTCTCGCGAGCGTGTCGAGAATGTTTCGTCCGGCCAGCAAGGGCGGG GGGGAGGGAACTGACAACACGTTCATCAGCGGCGGCGCGCTTTGTGGCAG GAGGGCATGGGGTTTGTATGTGTGGCCTCCCTAGAGTGGGCGACAATAAC GAGAAATGTACTGTAACAGGTTGGAAAACCTTGGCGCACTTCACGGTGTA GCGAGAGTGCTGATTCATCTCTTGGGCGAGACTGGCGGTGCCTCACGAGA GAAAACAAGAGGCAAAGCAAACCAGCCAGATGATCAATACAAGGTGTAAG ATTGGTGGAAGACCAGTGGCGTTGTGCGACGTTTTGCAGCGTGAAGAGCG GTCGCCGAAGAACACATGTTTTAGTAAAAGGGAGCCGCGACTCACCTCGA TTGTGACGCTTGGCCAAAACCAACGAATCGCAAGGACCACAGCTACGAAA CACAGCAGTACCCTCGGCGGTTCTGGCGCGACGTTCGCGGGAAGACCTCT TTCCACTCCTGCAAATTTCACCTATTTAAGGCTGCTTTTTACCCCTGAAC CGCTGACACTTTTCAAAGGGGCTTCGAAGTTGACAGAACCCCTGCGTTGC CTTCGAAGAATGACCTTCTTCTAGTTCACCCTTGTGAAACGTGTGTATAG CCTGGGTCGGCGAATAAATGGCATATCGCTCCGTCCCGGCATTGTAGGGC TGCAAGGTCAGTGGTAAGACGACAATTCACGGCATGCGTTAACGCGAATA CACCCACGACCCCCGATCTTCAGTTGTTCTTCGGGCTGGACAAGTTCCTC CCGTACTTCGATTTCGTGGGAGACTTCAAGCACGTGCAGGAGCACTCGGA GGAGTTCCTGAAGCGAGCCGGGCTGTGGGAAGAGTTCGGCGCGTCCGGTT GGGGCCGGTGGGGGCAGGCGGCGTTCTTCCAGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11719:102..4836+

>mRNA_Ecto-sp13_S_contig11719.1485.1 ID=mRNA_Ecto-sp13_S_contig11719.1485.1|Name=mRNA_Ecto-sp13_S_contig11719.1485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11719:102..4836+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCAACTCAGTCCGCGGGGACGCCCCCCGGGCACGATGACCTACCCTT
AGCGTTGTCCGTCTGCAAGGACGGAGCATTTGAGTCTCCGTTGCCGCTTC
CTGCGGTACCGGAGAAGGAAGCCGCTCGTGCTTCGGCAGCTGCGGGTGCT
TCCTTTTTCGCACGGCGTTCGCCCGACGGAGGGGGGGGCGCGGATGGGGG
CCTGCTATCTACGTTGCCCCCGCCGCCGCCGCCGTTGTGGCAGGAGGTAA
AGCCCGAGCATAAGGCGGCGGTCACGCAGGAAGACCTGAACAGCTTCCAG
CACTTTTGGCTCGCGAACGTGGAGCATAAGGTGCTCATGGTGGCCATCCC
GAAGGTGGCGTGCACCCAGGTCCACGCTTTGTTCCTCCGCCTGCAGGGAT
CCGAGAACTGGGACACTCAGCGCATGGAAGAAATCCATTATCACAAAGAC
ATGGACAAGTACAAGCTGAGCACTATGCCGAACATGCCTCCCGGGAGGGC
CTCCGCGATCCTCAACGACCCCACCTGGACGAAGGGGGTGTTCTTGAGGG
ACCCCACGGAGCGGCTGCTCTCCTGCTTCCTGGACAAGGTCGTGCACAGA
AGGTCGTACAGCGTCAACGTCTTCAAAGCGGAAGACGTGCTTTCGTTCGA
GAAGTTTGTCGACCTCACCTCCAAGACTGCGCAAGCCAGGCTTCAGAAGG
ACTACCCCGGAGGCAACCTTGGCCTGACCAGACGAAGCAACCCGCATTGG
AGACCCCAGTTGTTCTTCGGGCTGGACAAGTTCCTCCCGTACTTCGATTT
CGTGGGAGACTTCAAGCACGTGCAGGAGCACTCGGAGGAGTTCCTGAAGC
GAGCCGGGCTGTGGGAAGAGTTCGGCGCGTCCGGTTGGGGCCGGTGGGGG
CAGGCGGCGTTCTTCCAGAGG
back to top