mRNA_Ecto-sp13_S_contig1171.1478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1171.1478.1
Unique NamemRNA_Ecto-sp13_S_contig1171.1478.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1171.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1171contigEcto-sp13_S_contig1171:14792..15278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size487
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.576645-UTR-Ecto-sp13_S_contig1171:14791..147991681462616.576645-UTR-Ecto-sp13_S_contig1171:14791..14799Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1171 14792..14799 +
1681462616.5963109-UTR-Ecto-sp13_S_contig1171:15180..152781681462616.5963109-UTR-Ecto-sp13_S_contig1171:15180..15278Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1171 15181..15278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.5861828-CDS-Ecto-sp13_S_contig1171:14799..151801681462616.5861828-CDS-Ecto-sp13_S_contig1171:14799..15180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1171 14800..15180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1171.1478.1prot_Ecto-sp13_S_contig1171.1478.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1171 14800..15180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1171.1478.1

>prot_Ecto-sp13_S_contig1171.1478.1 ID=prot_Ecto-sp13_S_contig1171.1478.1|Name=mRNA_Ecto-sp13_S_contig1171.1478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MQWTAHRLVSTGLSGRVSKSTTTDTFLGPAKLEGGQSRRPVNSSASRRAV
NGMIGKARQPIQMACSLFRFQADGRLSPNFRMGNLRVLPWEQIMQTIEKA
HILNDVVIPIFCGGGDCTHYCSSFNI*
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mRNA from alignment at Ecto-sp13_S_contig1171:14792..15278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1171.1478.1 ID=mRNA_Ecto-sp13_S_contig1171.1478.1|Name=mRNA_Ecto-sp13_S_contig1171.1478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=487bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1171:14792..15278+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGATCTATGCAATGGACAGCACATCGATTGGTGTCCACAGGGTTGTCA
GGCAGGGTCAGCAAATCAACGACCACAGATACTTTTTTAGGGCCGGCGAA
ATTGGAGGGCGGCCAAAGTCGTCGTCCCGTCAATAGCAGTGCTTCAAGAC
GAGCTGTCAATGGAATGATTGGCAAAGCTAGACAACCCATTCAAATGGCA
TGTAGCCTGTTCAGGTTTCAAGCCGATGGAAGGCTCTCACCAAATTTTCG
GATGGGCAACTTGCGTGTACTTCCATGGGAGCAAATAATGCAAACGATAG
AGAAGGCACACATACTGAACGACGTTGTCATACCCATTTTTTGCGGAGGC
GGCGACTGCACGCACTACTGTAGCAGCTTCAACATATGATTCACACATAC
AGACAAGGCACGCGCCGTTGACCTATGTTTACGTTAGAATGTCCCGCATC
AAAAGTGATAAATATTCATTGGTCAGGCGGTTAGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1171:14792..15278+

>mRNA_Ecto-sp13_S_contig1171.1478.1 ID=mRNA_Ecto-sp13_S_contig1171.1478.1|Name=mRNA_Ecto-sp13_S_contig1171.1478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1171:14792..15278+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAATGGACAGCACATCGATTGGTGTCCACAGGGTTGTCAGGCAGGGT
CAGCAAATCAACGACCACAGATACTTTTTTAGGGCCGGCGAAATTGGAGG
GCGGCCAAAGTCGTCGTCCCGTCAATAGCAGTGCTTCAAGACGAGCTGTC
AATGGAATGATTGGCAAAGCTAGACAACCCATTCAAATGGCATGTAGCCT
GTTCAGGTTTCAAGCCGATGGAAGGCTCTCACCAAATTTTCGGATGGGCA
ACTTGCGTGTACTTCCATGGGAGCAAATAATGCAAACGATAGAGAAGGCA
CACATACTGAACGACGTTGTCATACCCATTTTTTGCGGAGGCGGCGACTG
CACGCACTACTGTAGCAGCTTCAACATATGA
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