mRNA_Ecto-sp13_S_contig11703.1472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: D7FI91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI91_ECTSI) HSP 1 Score: 179 bits (453), Expect = 1.770e-56 Identity = 85/108 (78.70%), Postives = 88/108 (81.48%), Query Frame = 1
Query: 1 MRLVSNLGPIFCSS----CCHSFSPAFAGYDGGDCCACTCQTQSDDDYYY-WGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECGTWVRE 309
MRLVSNLGPI C C PAFAGYDGGDCC CTCQTQSDDD+YY CD DYMAC+DPDASCVDDDDVT EMVENCE+V IGDGYCDDGNNKAECGTWVRE
Sbjct: 1 MRLVSNLGPISCFPVGIRCRPPSPPAFAGYDGGDCCECTCQTQSDDDFYYPENCDADYMACVDPDASCVDDDDVTVEMVENCEYVHDIGDGYCDDGNNKAECGTWVRE 108
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.800e-47 Identity = 72/92 (78.26%), Postives = 77/92 (83.70%), Query Frame = 1
Query: 16 NLGPIFCSSCCHSFSPAFAGYDGGDCCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAEC 291
+G FC+ H+ + A GYDGGDCC CTCQTQSDDDYY WGC+ DYMACIDPDASCVDDDDVTAEMVENCEWV GIGDGYC DGNNKAEC
Sbjct: 35 EIGDGFCTQ--HN-NNAECGYDGGDCCECTCQTQSDDDYYSWGCNKDYMACIDPDASCVDDDDVTAEMVENCEWVAGIGDGYCHDGNNKAEC 123
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI) HSP 1 Score: 132 bits (331), Expect = 4.670e-37 Identity = 59/82 (71.95%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 64 AFAGYDGGDCCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECGTWVRE 309
A GYDGGDCC CTCQTQSDDDYY CD +YMACIDPDASCVDDDDVT E+V NC G IGDG C+ GNN ECGT E
Sbjct: 48 AECGYDGGDCCECTCQTQSDDDYYSGRCDKEYMACIDPDASCVDDDDVTIELVANCSHAGAIGDGICEKGNNNPECGTLALE 129
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: A0A6H5KC37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC37_9PHAE) HSP 1 Score: 122 bits (306), Expect = 4.360e-33 Identity = 56/73 (76.71%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 91 CCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECGTWVRE 309
CC QTQSD D WGC DYMACIDPDASCVDDDDVTAEMVENC+ + GIGDGYC+DGNNKAECGT RE
Sbjct: 8 CCPYPLQTQSDGDNNSWGCHKDYMACIDPDASCVDDDDVTAEMVENCQSLDGIGDGYCEDGNNKAECGTLARE 80
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 104 bits (259), Expect = 7.520e-24 Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 73 GYDGGDCCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECG 294
GYDGGDCC CTC + DDD W C +Y ACIDPDA CVDDDD+TA MVE C WV G+GDG+CD+ NN CG
Sbjct: 93 GYDGGDCCECTCVSPWDDDDD-WAC-RNYNACIDPDAPCVDDDDITAVMVEECGWVRGVGDGWCDEDNNNELCG 164
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.440e-23 Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 73 GYDGGDCCACTCQTQSDDDYYYWGCDLDY----MACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECG 294
GYDGGDCC CTC+ +S Y W D DY ACIDP A CVDDDD+T +MVENC +V GIG+G+CD NNK ECG
Sbjct: 214 GYDGGDCCECTCEYESP---YDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECG 288
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 101 bits (252), Expect = 2.150e-23 Identity = 52/98 (53.06%), Postives = 60/98 (61.22%), Query Frame = 1
Query: 1 MRLVSNLGPIFCSSCCHSFSPAFAGYDGGDCCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECG 294
M + + G I C S + YDGGDCC CTC+ S DD Y + C+ ACIDP+A CVDDDD TAE E+C WV IGDG CDD NNK ECG
Sbjct: 233 MMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCE--SHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECG 328
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 101 bits (252), Expect = 6.240e-23 Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 7 LVSNLGPIFCSSCCHSFSPAFAGYDGGDCCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECG 294
+ S+LG +C + GYD GDCC CTC + DDD +Y D ACIDP A CVDDDDVT +MVENC +V G+GDG+CDD NN CG
Sbjct: 98 VTSDLGNGYCDE---DNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENCGYVRGLGDGWCDDWNNNELCG 190
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.030e-23 Identity = 48/76 (63.16%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 76 YDGGDCCACTCQTQSDDDYYYWGCDLDYMACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECGTWV 303
YDGGDCC CTC+ S DD Y + C ACIDP A CVDDDD TAE E+C WV IGDG CDD NNK ECG V
Sbjct: 179 YDGGDCCECTCE--SHDDGYEYYCKPGSFACIDPGAECVDDDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGKGV 252
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 5.250e-22 Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 73 GYDGGDCCACTCQTQSDDDYYYWGCDLDY----MACIDPDASCVDDDDVTAEMVENCEWVGGIGDGYCDDGNNKAECG 294
GYDGGDCC CTC+ +S Y W D DY +CIDP+A+CV DDD+T +M ENC +V GIG+G+CD NNK ECG
Sbjct: 114 GYDGGDCCECTCEYESP---YDWDDDWDYHCREFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECG 188 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11703.1472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11703.1472.1 >prot_Ecto-sp13_S_contig11703.1472.1 ID=prot_Ecto-sp13_S_contig11703.1472.1|Name=mRNA_Ecto-sp13_S_contig11703.1472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp MRLVSNLGPIFCSSCCHSFSPAFAGYDGGDCCACTCQTQSDDDYYYWGCDback to top mRNA from alignment at Ecto-sp13_S_contig11703:4185..4789+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11703.1472.1 ID=mRNA_Ecto-sp13_S_contig11703.1472.1|Name=mRNA_Ecto-sp13_S_contig11703.1472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11703:4185..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11703:4185..4789+ >mRNA_Ecto-sp13_S_contig11703.1472.1 ID=mRNA_Ecto-sp13_S_contig11703.1472.1|Name=mRNA_Ecto-sp13_S_contig11703.1472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11703:4185..4789+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |