mRNA_Ecto-sp13_S_contig11693.1469.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11693.1469.1
Unique NamemRNA_Ecto-sp13_S_contig11693.1469.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11693.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11693contigEcto-sp13_S_contig11693:446..4518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2288
Hectar predicted targeting categoryother localisation
Exons4
Cds size1257
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11693.1469.1prot_Ecto-sp13_S_contig11693.1469.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11693 577..2124 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.1256454-UTR-Ecto-sp13_S_contig11693:445..5761681462616.1256454-UTR-Ecto-sp13_S_contig11693:445..576Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11693 446..576 -
1681462616.1501474-UTR-Ecto-sp13_S_contig11693:2124..27291681462616.1501474-UTR-Ecto-sp13_S_contig11693:2124..2729Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11693 2125..2729 -
1681462616.1580498-UTR-Ecto-sp13_S_contig11693:3375..34911681462616.1580498-UTR-Ecto-sp13_S_contig11693:3375..3491Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11693 3376..3491 -
1681462616.1668591-UTR-Ecto-sp13_S_contig11693:4339..45181681462616.1668591-UTR-Ecto-sp13_S_contig11693:4339..4518Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11693 4340..4518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.1342268-CDS-Ecto-sp13_S_contig11693:576..14251681462616.1342268-CDS-Ecto-sp13_S_contig11693:576..1425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11693 577..1425 -
1681462616.142235-CDS-Ecto-sp13_S_contig11693:1716..21241681462616.142235-CDS-Ecto-sp13_S_contig11693:1716..2124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11693 1717..2124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11693.1469.1

>prot_Ecto-sp13_S_contig11693.1469.1 ID=prot_Ecto-sp13_S_contig11693.1469.1|Name=mRNA_Ecto-sp13_S_contig11693.1469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=419bp
MSSHAGVEAGSTGDCPGSTEQDPADSQLDKMLPSLQRCSTSTEIEEVIQR
QYSRRRSGRTPDPCPANPRNDTGVRFNGEFVKTASSILTGRSSTAYSRGV
KDEYSVPTPLTGRYGDADSSDDGGDDSGDDSDGEEDPNAYSNKIAVPWIA
AYATKMNKSGDEMKDLPEHVFFVTRCESPWYMGIVEALAKVRGRNFRYLF
QKSSAKNALRWDYDRRKCDISPGDPLYKMVTEPLLHKMRKLSMLRVVRRA
DGESEFEEGEKRVVGVCAALESKPPKQSKGSEGLQGMHADMSRFHYWQEE
FGFSTITAGTKAAFLDIYPGSFNAWKGQKVAEDLTKRKPVRIKLRPGETI
VLNGLARQRGVGYARFNLRFFVSLIVKQACDAADKDEKGYTTCKLEKHSE
PERPAFAVGSWSSRTVKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig11693:446..4518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11693.1469.1 ID=mRNA_Ecto-sp13_S_contig11693.1469.1|Name=mRNA_Ecto-sp13_S_contig11693.1469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11693:446..4518- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGAAGGAAAGGGCCTGTAACAGCAGTATGGCTAAATCACGAGGAGAG
AGAAAGAAGCGAACGAGAGAGGAACATCGCAACCAGCCACCGGACCCGCG
ACGGAGGCGTGGGCCGAAGTTCTACTGTAGGGTGTACATATTCGTGAGGG
CGGTGTTTTCCAGCCGAACAATCTTTCAGGTCAGTTCAGACACTAGTGGT
TCCCGGCGGTGGTACCGAACCTAATGTAGAGGTCATGTGCGGTAGGCTGT
GTTGCGCGACTCCGTGCCCCTTCATAGCCATTTCTTCGTGGGGTGTGCGC
ATTTATTCCGTTCGTGCATGCATGCATGCGTTGAGCCCGTAGCTACTGCG
GGGAACAGCCCAGTGAGATGAAAGGTACAGGCGTGTTCTGACCCTACGCC
AAAGCTGTAATGTTTGTCGCTAGATGATGTATGGGTTCGTGTGTACGATG
AAGTTTATATACGCAGTAGTTTAGTACAAGCAAGCGTCATTGGCTCGCAC
GGCAAGTGGGAGTACGTCCCTTCATGTCTCCTGTGCTCTGCTATCTTTGT
GAGGACACGTGGAACCCGTTGTGCGCTTGGTCACACAAGTTTGTTGTTTG
CCTTGTGCATCAAACGTCCCGCCTCCCCCCGTTCACCGGCGCTAACCCTT
CCAGCCACGCCGTGGATTGCTTTGTTCTTTACGTGTTTAGTTTGTCTGGC
CCACGGCGCCCCTCCCCCCCTGGCTCGAAACCCGCTTCGTTCCCTTCGTT
CACCACACGCGTTGTTTGCTTGGTCCACTACACGTGACGGGGAAGGGGGA
AAAAAACCCACCTTCCAGCCCCACGCGGTTTACCTGGCCCTAATTGTATC
TCCTTATTTCCAGCTCGTGTTGGCCCTGTGACAAATTATCCTGCGCTTCT
GCGCTTCGAACGGGTTCGCGTCAATACGAAGTGGATTGAAACAGCGGGTG
TCTCCTACTTTTTTTTTAGCTTTTGTTGTGTCAAGTCCTTCATAGACCTA
AGTCCTGCCCCAAAAACCGCTGCTAAGGTGCCGGATCTTGTGAGGCGTCA
TCCAAACGAGAAGATAACAAGCAGAGGAACCAATCGGCAGCGGAAGAAGC
TCAAAAAAAGGCTGTGAAGGAGCGGTACATTTCCAAGGGCGAGGTAAGGG
TGTCCGGGAAATGTTGACGGGGTGCCCACGGAGTATTTACCGCTCAGCGG
CGCGTTTTTCTCGTAGATTTCACACGCTGCTTGAGCGATTGAGCCCTGAT
CTAACGACATTTAGTTCCAATGGTAGCATGAATCACGCCAAACGGTACAA
GAAGGCGGTCGGTGTCTTTCTCTGTCTTTGGCGACACACCTCGGCGGCAG
GTTGTAATTTTTCGATGTTTCGTGACGGTTGTTTCCTCAGCGTTACCTTT
CGGTTAGGCAGCAAGTCGTGAATTATTGGCATGAGGAAGTCACGGTGGTA
CACCAACAGCAAGTTGTCGTTGCGATAATACATTACAAGAAAGAGCAGCG
AAGGGTACATGTTTGTGTCGCGGCTGCTGGAGTGAAAACCCGAAATGCTT
CCATAATCTCTGCGTCTTCATCGACAATTGCCCTGGCCAAGCAATATACA
TTTCACCGTAGCCTCCACGTCCATGCCAGGGTAAAATGCTTCTTAACCAT
CACGCCCATCGATCACGTATTGGGCCACCCACCCCAGTGGAGAGCGGGGG
TGCGGGCTTGTCCCTGCCCAAAGTACATACACTCCTTTCGAGTATTTTGC
GATGCGATCTACACCCAAACTTACCCTCTATTTCAACAGGCGCCTGACCA
GTCCGTCTTCGAAATGCTCGGCCAGAAGGCGTTCAAAGAGGACGAGTTGC
TCCGCCTGATCTACAAGGCGAGTCCTGAGGCAGAGGATGCTGACGCCTGC
TGACATCGAGGAGTCGGCCCAAGGAGAGCTTCGATACACTATCAGCCAGG
GCCTCAATGTAGTACCACTCGTAGACGTGACTACTCACATGACAATGAAG
CAGCTGTGGCTGTTTGCGTTGACCCTGGCCCTCAAAGATGACAAACGTTC
GACGTATTGGGCCAATGGTTTGGAGCATGCTAGCCGAGGCCATGCCGGTC
TGTTGGTGCGGGAGGTCTTTAAGGACTCCGCCTTGCTGCAAGCTTAAGCC
ATGATTTGGATGAAGAAGTACGAACCCACTACGCCCATCCCCCGAGACGC
GCGGCTTTTCGTGCCCCCGATCTTTCCGACAAGGAAGGAGGACATCGAAG
AAGTAGTAGGAACTTTCAAATGCGGTGAATGGGGACGTAGTGAGGCAAAT
AGGGGAGGCGATAGCGACGTATCTCCGCAGTCTTCAGACGGGGGGCACTG
GGGGTGGACGTGGAGATCGGGAGGCAAATCCGGGGGACGAAGACATGTCC
TCTCATGCGGGTGTGGAGGCGGGGAGCACTGGGGATTGTCCCGGTAGTAC
AGAGCAAGACCCGGCCGATAGTCAGCTAGACAAGATGCTTCCTTCGTTGC
AACGGTGCTCAACAAGTACCGAGATCGAGGAGGTAATACAACGGCAATAT
AGCCGCAGACGATCTGGACGCACTCCCGACCCTTGCCCGGCTAACCCAAG
GAACGACACCGGCGTTCGGTTTAACGGCGAATTTGTGAAGACTGCCAGCA
GTATCCTTACCGGTAGGAGCAGTACGGCATACTCACGAGGGGTGAAGGAC
GAGTACTCGGTGCCTACCCCGCTGACCGGACGGTATGGGGATGCCGACAG
CAGTGACGACGGCGGTGACGACAGCGGTGACGACAGCGATGGCGAGGAAG
ATGTGAGTGTTGTGTGGTTTGTTGTTATTTTTCTTTCTAGTCGAGCGTCG
TGCGGCGCGACTTTCGGTGTTAATGACGCATCAGACGGGGTATTGGCAGG
ACCATGCCGGTGTCGTATCCTTTCATTTTTGCCTGCCTTCTGCCACCCGA
AGCTATCTGACTTGCTGTTCAATGGGAGAAGGGTTGAGCAATCCCGTGCT
TTACTCCTTTCATTCACGAATTCGACGCCTTGTAAGCTAGTTACTATCCC
TACGTCTTTGGTTGTCGTTCGAGTTTGGTGACTATTTTGGCAGCCCAATG
CCTATTCGAACAAGATCGCCGTTCCATGGATCGCGGCATATGCGACCAAG
ATGAACAAGTCAGGGGACGAGATGAAGGACTTGCCCGAACACGTTTTTTT
TGTCACCAGGTGTGAGTCACCATGGTACATGGGAATCGTAGAGGCACTTG
CTAAGGTTCGAGGCAGAAACTTCCGGTATCTCTTCCAGAAATCGTCTGCT
AAGAATGCCCTCAGGTGGGACTACGATAGGAGAAAGTGTGACATTTCTCC
CGGCGATCCACTTTATAAGATGGTTACCGAACCCTTGCTACACAAGATGA
GGAAGTTGTCAATGCTTCGTGTCGTTAGGCGTGCCGACGGCGAGAGCGAG
TTTGAGGAGGGTGAGAAACGCGTGGTTGGTGTATGTGCCGCCCTTGAGTC
GAAACCACCGAAGCAATCGAAGGGATCGGAGGGATTGCAGGGCATGCATG
CAGACATGTCGCGATTTCACTACTGGCAGGAGGAATTCGGCTTCTCTACA
ATCACGGCAGGCACAAAAGCCGCCTTTCTTGACATATATCCGGGATCGTT
CAATGCGTGGAAGGGACAGAAAGTGGCGGAAGACTTGACGAAACGAAAAC
CTGTCAGAATTAAATTGAGGCCCGGGGAGACGATAGTTCTCAATGGTCTC
GCTCGCCAACGAGGCGTTGGGTATGCGCGTTTCAACCTGCGCTTCTTCGT
GTCGTTGATCGTCAAGCAAGCATGTGATGCAGCGGATAAGGACGAGAAGG
GGTACACTACCTGTAAGCTAGAGAAGCATAGTGAACCGGAGAGGCCCGCG
TTTGCCGTCGGATCGTGGAGCAGCAGGACGGTGAAGAAATAGTGTACGAT
GTTTTTTGTAAATGATGGCAATACCGAGTTTCTTGGCCGCCCGACCGGGT
TGGCGTGGATTTATTTATTTGTTGGCAACCACGCTGTACAAAAACGCTTC
CGCCCTCATCCGCTCGTGTCCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11693:446..4518-

>mRNA_Ecto-sp13_S_contig11693.1469.1 ID=mRNA_Ecto-sp13_S_contig11693.1469.1|Name=mRNA_Ecto-sp13_S_contig11693.1469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11693:446..4518- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCTCATGCGGGTGTGGAGGCGGGGAGCACTGGGGATTGTCCCGG
TAGTACAGAGCAAGACCCGGCCGATAGTCAGCTAGACAAGATGCTTCCTT
CGTTGCAACGGTGCTCAACAAGTACCGAGATCGAGGAGGTAATACAACGG
CAATATAGCCGCAGACGATCTGGACGCACTCCCGACCCTTGCCCGGCTAA
CCCAAGGAACGACACCGGCGTTCGGTTTAACGGCGAATTTGTGAAGACTG
CCAGCAGTATCCTTACCGGTAGGAGCAGTACGGCATACTCACGAGGGGTG
AAGGACGAGTACTCGGTGCCTACCCCGCTGACCGGACGGTATGGGGATGC
CGACAGCAGTGACGACGGCGGTGACGACAGCGGTGACGACAGCGATGGCG
AGGAAGATCCCAATGCCTATTCGAACAAGATCGCCGTTCCATGGATCGCG
GCATATGCGACCAAGATGAACAAGTCAGGGGACGAGATGAAGGACTTGCC
CGAACACGTTTTTTTTGTCACCAGGTGTGAGTCACCATGGTACATGGGAA
TCGTAGAGGCACTTGCTAAGGTTCGAGGCAGAAACTTCCGGTATCTCTTC
CAGAAATCGTCTGCTAAGAATGCCCTCAGGTGGGACTACGATAGGAGAAA
GTGTGACATTTCTCCCGGCGATCCACTTTATAAGATGGTTACCGAACCCT
TGCTACACAAGATGAGGAAGTTGTCAATGCTTCGTGTCGTTAGGCGTGCC
GACGGCGAGAGCGAGTTTGAGGAGGGTGAGAAACGCGTGGTTGGTGTATG
TGCCGCCCTTGAGTCGAAACCACCGAAGCAATCGAAGGGATCGGAGGGAT
TGCAGGGCATGCATGCAGACATGTCGCGATTTCACTACTGGCAGGAGGAA
TTCGGCTTCTCTACAATCACGGCAGGCACAAAAGCCGCCTTTCTTGACAT
ATATCCGGGATCGTTCAATGCGTGGAAGGGACAGAAAGTGGCGGAAGACT
TGACGAAACGAAAACCTGTCAGAATTAAATTGAGGCCCGGGGAGACGATA
GTTCTCAATGGTCTCGCTCGCCAACGAGGCGTTGGGTATGCGCGTTTCAA
CCTGCGCTTCTTCGTGTCGTTGATCGTCAAGCAAGCATGTGATGCAGCGG
ATAAGGACGAGAAGGGGTACACTACCTGTAAGCTAGAGAAGCATAGTGAA
CCGGAGAGGCCCGCGTTTGCCGTCGGATCGTGGAGCAGCAGGACGGTGAA
GAAATAG
back to top