mRNA_Ecto-sp13_S_contig1169.1465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1169.1465.1
Unique NamemRNA_Ecto-sp13_S_contig1169.1465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1169.1465.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.450e-25
Identity = 51/68 (75.00%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:  575 MIRRNSGASSFAAFLCFTLHVAAQYGSCVNGTIDDIGNGRCDTENNNPSCGFDGRDCCSCTCTDTSLY 778
            M+RR S  SS A  L   L  AAQY SCVNGTIDDIGNGRCD ENN+PSCGFDG DCCSCTCTDT LY
Sbjct:    1 MVRRRSSISSVAVLLSLLLGAAAQYDSCVNGTIDDIGNGRCDAENNSPSCGFDGGDCCSCTCTDTVLY 68
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BLAST of mRNA_Ecto-sp13_S_contig1169.1465.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.540e-14
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  584 RNSGASSFAAF---LCFTLHV-AAQYGSCVNGTIDDIGNGRCDTENNNPSCGFDGRDCCSCTCTDTSLY 778
            R  G++SFA +   LC  LH  AAQY +C NG I DIGNGRCD E N PSCG+DG DCCSCTC D  LY
Sbjct:    3 RQRGSTSFAVYILLLCPLLHGGAAQYDTCTNGAIADIGNGRCDAELNVPSCGYDGGDCCSCTCVDGPLY 71
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BLAST of mRNA_Ecto-sp13_S_contig1169.1465.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.890e-9
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:  596 ASSFAAFLCFTLHVAAQYGSCVNGTIDDIGNGRCDTENNNPSCGFDGRDCCSCTCTDTSLYV 781
            AS+F   LC      AQY SC  G + DIGNG CD   N  SCG+DG DCCSCTC D  L++
Sbjct:   13 ASAFT-ILCLLRSGIAQYDSCTGGNVTDIGNGNCDAALNVASCGYDGGDCCSCTCNDGPLHL 73
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BLAST of mRNA_Ecto-sp13_S_contig1169.1465.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 7.090e-8
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:  575 MIRRNSGASSFAAFL--CFTLHVAAQYGSCVNGTIDDIGNGRCDTENNNPSCGFDGRDCCSCTCTD 766
            M+ R S   SF A L  CF     AQY +C NGT+ DIGNG+CD   N PSCG+DG DCC CTC D
Sbjct:    1 MMDRYSIVVSFVAALGSCF-YGGTAQYANC-NGTVTDIGNGQCDAVLNVPSCGYDGGDCCPCTCVD 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1169.1465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G300_ECTSI1.450e-2575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTI5_ECTSI2.540e-1462.32Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D8LSC0_ECTSI3.890e-953.23Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G5Y7_ECTSI7.090e-856.06Polymorphic Outer membrane protein G/I family n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1169contigEcto-sp13_S_contig1169:3495..4530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score69.7
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D8LSC0
Model size1036
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2BFIX@1,2S176@2759
Cds size294
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462615.9089036-UTR-Ecto-sp13_S_contig1169:3494..41681681462615.9089036-UTR-Ecto-sp13_S_contig1169:3494..4168Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1169 3495..4168 +
1681462615.9261453-UTR-Ecto-sp13_S_contig1169:4462..45301681462615.9261453-UTR-Ecto-sp13_S_contig1169:4462..4530Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1169 4463..4530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462615.9181378-CDS-Ecto-sp13_S_contig1169:4168..44621681462615.9181378-CDS-Ecto-sp13_S_contig1169:4168..4462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1169 4169..4462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1169.1465.1prot_Ecto-sp13_S_contig1169.1465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1169 4169..4462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1169.1465.1

>prot_Ecto-sp13_S_contig1169.1465.1 ID=prot_Ecto-sp13_S_contig1169.1465.1|Name=mRNA_Ecto-sp13_S_contig1169.1465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MTSEMAAATPRTITHPAASTAETAVPVPAPIPLSTCTDNEFDCIFPDCGD
TVASSGEERCLDDYWGDTYCDPINNHLSCGYDGGDVRGFPPIILDLL*
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mRNA from alignment at Ecto-sp13_S_contig1169:3495..4530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1169.1465.1 ID=mRNA_Ecto-sp13_S_contig1169.1465.1|Name=mRNA_Ecto-sp13_S_contig1169.1465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1169:3495..4530+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTTGTATCCATTTCCGTGAACCAGCGTGTAAACCACCGGTAAAGCAT
CAGAACTTTGCAAAAGCACAGCGTTTTATCCTTTTTCTCTGTGTTTTGCG
TTTATCTTCCTTTTGCAAGCCCCAAGCAGGGCGTTCTTTCTTGCTATGCA
TACACTCTATGCAACATTTCGTGTGGCCGCCGCCAGGGGACATTCACAGG
ATAGACCCTGGTCAGAGGCATTGATGGATAGCCACAAGCACGACCCCCCC
CCCGAATCCGGACCACAGATCGATTCCCGTCGGGATTAGGATGCGCAGTG
CGTTTAGCGTGAGTTGCTCTGAGCACCGTCAACAGATTCCTCGGATTACT
ATCTATGGTTTACCGTATAGTCTCACGAGAGCGGTAGCCAGGTCAGCGTT
TGGCGCCAGTCGCCGGTGGTTTGGGTTTCGTTGCATATCCTGCCGGCCGT
TCTGCACAATTACGTGTGCGGACTTGTTTCCTCGACCCCTGTCCGTGCGC
ATTCCACCGTCCGCTAGTTGAAAGGCGCTTGTGCAAGGACAGCGTGGGGG
CTGGGTTCTCATTCAAGGGAGATCATGATTCGACGAAACAGCGGAGCCAG
TTCCTTTGCAGCCTTTCTCTGTTTCACTCTTCACGTTGCTGCCCAGTACG
GCAGCTGTGTCAACGGCACGATCGATGACATCGGAAATGGCCGCTGCGAC
ACCGAGAACAATAACCCATCCTGCGGCTTCGACGGCAGAGACTGCTGTTC
CTGTACCTGCACCGATACCTCTCTCTACGTGCACCGACAACGAATTCGAC
TGTATTTTTCCGGACTGCGGTGATACTGTCGCTTCTTCGGGAGAGGAACG
CTGCTTGGATGATTACTGGGGCGACACCTACTGTGACCCCATAAACAACC
ACCTTTCGTGCGGCTACGATGGCGGAGACGTGCGTGGTTTTCCACCTATT
ATTCTCGACTTACTGTAGTATATGGGGTCGGTGCATCCCGCGGGCGCGTG
CCGATGCGTGGAACATTCCTTGAACTGTCTGGGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1169:3495..4530+

>mRNA_Ecto-sp13_S_contig1169.1465.1 ID=mRNA_Ecto-sp13_S_contig1169.1465.1|Name=mRNA_Ecto-sp13_S_contig1169.1465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1169:3495..4530+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCGGAAATGGCCGCTGCGACACCGAGAACAATAACCCATCCTGC
GGCTTCGACGGCAGAGACTGCTGTTCCTGTACCTGCACCGATACCTCTCT
CTACGTGCACCGACAACGAATTCGACTGTATTTTTCCGGACTGCGGTGAT
ACTGTCGCTTCTTCGGGAGAGGAACGCTGCTTGGATGATTACTGGGGCGA
CACCTACTGTGACCCCATAAACAACCACCTTTCGTGCGGCTACGATGGCG
GAGACGTGCGTGGTTTTCCACCTATTATTCTCGACTTACTGTAG
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