mRNA_Ecto-sp13_S_contig11676.1457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11676.1457.1
Unique NamemRNA_Ecto-sp13_S_contig11676.1457.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11676.1457.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 8.350e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 2 
Query:    2 SSS*VLISSRVPVVRAHRLTWALSMKNLLRRAAIELWTWSECLELRGSLCGARFTISGLAPR 187
            S S V +S R P V A  LTWAL M++LLR AAIELWTWSECLEL+GSLC A    +   PR
Sbjct: 1101 SKSAVPVSGRAPAVWALHLTWALPMESLLRTAAIELWTWSECLELQGSLCAASLRSANWWPR 1162
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BLAST of mRNA_Ecto-sp13_S_contig11676.1457.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.100e-11
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:   20 ISSRVPVVRAHRLTWALSMKNLLRRAAIELWTWSECLELRGSLCGARFTISGLAPRADT 196
            ISSRVPVVRA RLTWALSM+ LLR+AAIELWTWSE LEL GS C +      + PR  T
Sbjct:   85 ISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLT 143
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BLAST of mRNA_Ecto-sp13_S_contig11676.1457.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.170e-9
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 2 
Query:    5 SS*VLISSRVPVVRAHRLTWALSMKNLLRRAAIELWTWSECLELRGSLCGA 157
            SS V + SRVPVVRA RLTWA SM+ L++RAAIELW+ SE LE+ G LC A
Sbjct:   78 SSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAA 128
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BLAST of mRNA_Ecto-sp13_S_contig11676.1457.1 vs. uniprot
Match: A0A6H5KXY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXY5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.050e-5
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:   14 VLISSRVPVVRAHRLTWALSMKNLLRRAAIELW 112
            VLISSRVPVVRAHRLT ALSM+ LLRRAA+ELW
Sbjct:  204 VLISSRVPVVRAHRLTRALSMEPLLRRAAVELW 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11676.1457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4M0_9PHAE8.350e-1161.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LIJ3_9PHAE9.100e-1167.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F9_ECTSI4.170e-966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXY5_9PHAE3.050e-587.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11676contigEcto-sp13_S_contig11676:1031..2960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1930
Hectar predicted targeting categoryother localisation
Exons1
Cds size1038
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462615.1868422-UTR-Ecto-sp13_S_contig11676:1030..13061681462615.1868422-UTR-Ecto-sp13_S_contig11676:1030..1306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11676 1031..1306 +
1681462615.2117562-UTR-Ecto-sp13_S_contig11676:2344..29601681462615.2117562-UTR-Ecto-sp13_S_contig11676:2344..2960Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11676 2345..2960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462615.1996434-CDS-Ecto-sp13_S_contig11676:1306..23441681462615.1996434-CDS-Ecto-sp13_S_contig11676:1306..2344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11676 1307..2344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11676.1457.1prot_Ecto-sp13_S_contig11676.1457.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11676 1307..2344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11676.1457.1

>prot_Ecto-sp13_S_contig11676.1457.1 ID=prot_Ecto-sp13_S_contig11676.1457.1|Name=mRNA_Ecto-sp13_S_contig11676.1457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MVSISLSPATCGQRPFNSYCSGIASTNPLLKSCGRPPCSSYRSGFASTNP
LPKSCGRHRCSSGGNSTNPLLKSCGRHRCNSYHSGCNSTNPLPESYGRQH
CSGYRSGAVSTNPSLKSCGRPPCNNYRSGIASTKPLSKSCGRHRYGSCRS
GLASTNPLLKSCGRHHCNSFPSGSISISPLPESCRRHPCNSYRWRGSSTN
PSLKSCGRPPCNSYCSGITSTNPLPESRGRRSCKSYRSGIISGNRLLKSC
GRRPCNSCRSGRASTNPFPESCGRRPWDRDRSGYYFNRAVADFAWPASLQ
SVTQLTYPGTRHHYRGLEKTSPGSRIFVWSTVQSVRVGHGKGYEI*
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mRNA from alignment at Ecto-sp13_S_contig11676:1031..2960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11676.1457.1 ID=mRNA_Ecto-sp13_S_contig11676.1457.1|Name=mRNA_Ecto-sp13_S_contig11676.1457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11676:1031..2960+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAGTTCTTAGGTTCTTATCTCGAGCCGTGTGCCGGTCGTGCGGGCTC
ATCGTTTGACGTGGGCACTTTCCATGAAAAATCTACTGCGGAGAGCCGCC
ATCGAGCTGTGGACATGGTCAGAGTGTCTCGAGCTGCGTGGATCTCTGTG
TGGTGCTAGATTTACGATCAGTGGCTTGGCCCCGAGGGCTGACACAGCTG
GTGTACAAGGCAGGTTTTGGAATTCCAATAGGCGACGTGCCGTTTCCTGC
GCGCCTGCAAATTTTGGCGCTTGGGGATGGTTTCAATCAGCCTATCGCCG
GCGACGTGTGGCCAGCGTCCCTTCAACAGCTATTGTTCGGGTATTGCTTC
AACCAACCCATTGCTGAAGTCGTGTGGCCGGCCTCCTTGTAGCAGCTATC
GTTCGGGTTTTGCTTCAACTAACCCGTTGCCGAAGTCGTGTGGCCGGCAT
CGCTGCAGCTCGGGAGGGAATTCAACCAACCCATTGCTGAAGTCGTGTGG
CCGTCATCGCTGCAACAGCTATCATTCGGGTTGCAATTCAACCAACCCAT
TGCCGGAGTCGTACGGCCGGCAACATTGCAGCGGCTATCGTTCGGGAGCA
GTTTCAACTAACCCATCGCTGAAATCGTGCGGCCGGCCCCCCTGCAACAA
CTATCGTTCGGGGATTGCTTCAACCAAGCCATTGTCGAAGTCATGTGGGC
GGCATCGCTACGGCAGCTGTCGTTCGGGTTTGGCCTCAACCAACCCATTG
CTGAAATCGTGTGGCCGGCATCACTGCAACAGCTTTCCTTCGGGTAGCAT
TTCAATCAGCCCATTGCCGGAGTCGTGTCGCCGGCATCCCTGCAACAGCT
ATCGTTGGCGCGGGAGTTCAACCAACCCATCGCTCAAGTCGTGTGGCCGG
CCTCCCTGCAACAGCTATTGTTCGGGTATCACTTCGACCAACCCTTTGCC
GGAGTCGCGTGGCCGGCGTTCTTGTAAAAGCTATCGTTCGGGCATCATTT
CAGGCAACCGATTGCTGAAGTCGTGTGGCCGGCGTCCCTGCAACAGCTGT
CGTTCGGGTCGAGCTTCAACCAACCCATTCCCGGAGTCGTGTGGCCGGCG
TCCGTGGGACAGAGATCGTTCGGGGTACTACTTCAACAGAGCCGTTGCTG
ATTTCGCGTGGCCGGCCTCCCTGCAAAGTGTGACACAGCTGACCTATCCG
GGCACACGTCACCATTACAGAGGTTTAGAGAAAACTTCGCCTGGATCCCG
TATCTTCGTTTGGTCCACTGTCCAGTCCGTGCGTGTTGGACACGGGAAGG
GCTACGAAATATGAGGTTCAATGGTCGCGAACAGAGAGAATCTCCGTTAG
GTTGATACTCGATGACAGCATAATGGCGAAACGTCAGTCTACGGTGTTCC
CGTGGCTCGCCCGTATATCCACTACAGTCGCTCTTCATGCACACGGCCTT
TCTTTTATGAGCCCTATTCGCAAAGAATCGGGTTGATTTCATGTTGGCCG
ACGGTCGTCTCGATAAATGGGTCAGACCAGTGCCGTAACAGGGGTCGGGG
AGCACCTTTGGTGATATGACCTTTACTCTACGTGCAAGAACGAAAGAAGC
CGAGGACGACAGGAGGTTTGGGCGTACGGCGGGCAATATTTTCATGCCAG
AGAGTATCGCTGATCACTATCACTCCGGAGTGTTACCGCCAACTGGGCAG
TTTCCTCACACTGAGCAGGCTCGTCATAGCACGCCTGTGTCGATGCTTCA
GGTTGTCAATGAAACGATCAGTTGCGTGACCTGACACGTACTTGCAGTAG
GCGCTGGCCTCCTCCGCCAGCGGAAGTAGTAGCAGGTGCGTTCCGGGCGC
AGGATTCCAGAGCGAGCTCAAAAGATGGCTCCGCTATGTACCTGTATGCA
TGTGTTCGGGTCTCTGCCGTGTCGTGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11676:1031..2960+

>mRNA_Ecto-sp13_S_contig11676.1457.1 ID=mRNA_Ecto-sp13_S_contig11676.1457.1|Name=mRNA_Ecto-sp13_S_contig11676.1457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11676:1031..2960+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTCAATCAGCCTATCGCCGGCGACGTGTGGCCAGCGTCCCTTCAA
CAGCTATTGTTCGGGTATTGCTTCAACCAACCCATTGCTGAAGTCGTGTG
GCCGGCCTCCTTGTAGCAGCTATCGTTCGGGTTTTGCTTCAACTAACCCG
TTGCCGAAGTCGTGTGGCCGGCATCGCTGCAGCTCGGGAGGGAATTCAAC
CAACCCATTGCTGAAGTCGTGTGGCCGTCATCGCTGCAACAGCTATCATT
CGGGTTGCAATTCAACCAACCCATTGCCGGAGTCGTACGGCCGGCAACAT
TGCAGCGGCTATCGTTCGGGAGCAGTTTCAACTAACCCATCGCTGAAATC
GTGCGGCCGGCCCCCCTGCAACAACTATCGTTCGGGGATTGCTTCAACCA
AGCCATTGTCGAAGTCATGTGGGCGGCATCGCTACGGCAGCTGTCGTTCG
GGTTTGGCCTCAACCAACCCATTGCTGAAATCGTGTGGCCGGCATCACTG
CAACAGCTTTCCTTCGGGTAGCATTTCAATCAGCCCATTGCCGGAGTCGT
GTCGCCGGCATCCCTGCAACAGCTATCGTTGGCGCGGGAGTTCAACCAAC
CCATCGCTCAAGTCGTGTGGCCGGCCTCCCTGCAACAGCTATTGTTCGGG
TATCACTTCGACCAACCCTTTGCCGGAGTCGCGTGGCCGGCGTTCTTGTA
AAAGCTATCGTTCGGGCATCATTTCAGGCAACCGATTGCTGAAGTCGTGT
GGCCGGCGTCCCTGCAACAGCTGTCGTTCGGGTCGAGCTTCAACCAACCC
ATTCCCGGAGTCGTGTGGCCGGCGTCCGTGGGACAGAGATCGTTCGGGGT
ACTACTTCAACAGAGCCGTTGCTGATTTCGCGTGGCCGGCCTCCCTGCAA
AGTGTGACACAGCTGACCTATCCGGGCACACGTCACCATTACAGAGGTTT
AGAGAAAACTTCGCCTGGATCCCGTATCTTCGTTTGGTCCACTGTCCAGT
CCGTGCGTGTTGGACACGGGAAGGGCTACGAAATATGA
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