mRNA_Ecto-sp13_S_contig1166.1442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1166.1442.1
Unique NamemRNA_Ecto-sp13_S_contig1166.1442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI)

HSP 1 Score: 595 bits (1535), Expect = 2.990e-210
Identity = 314/333 (94.29%), Postives = 318/333 (95.50%), Query Frame = 1 
Query:   58 LLANNHLGP------DEGHLHSSLEPPTGGDXXXXXXXXXXXXXTDGLANSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMGDRGDDHHHKDGERAAPAGGGGMPQETWARGPPEARDRDRDAGGFRG 1038
            L A+++ GP        GHLHSSLEPP G  XXXXXXXXXXXX TDGLA+SASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMGDRGDDHHHKDGERAAPA GGGMPQETWARGPPEARDRDRDAGGFRG
Sbjct:   23 LKASSYPGPLGKAAHSAGHLHSSLEPPAGX-XXXXXXXXXXXXATDGLADSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMGDRGDDHHHKDGERAAPAAGGGMPQETWARGPPEARDRDRDAGGFRG 354
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: A0A835Z354_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z354_9STRA)

HSP 1 Score: 258 bits (660), Expect = 3.900e-82
Identity = 121/183 (66.12%), Postives = 150/183 (81.97%), Query Frame = 1 
Query:  217 LYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            LY+ PED TG  QT IQNRYCFWY +KG ++ +   +E YES IK + SFQTVEHFWRIYNH+ R DQVP  TD HLF+DGIKP WED+ N+RGG  ++RLKKGLASR  + L+LA+IGEQFDVGNEICGAV+SVRYSEDV+ VWNR+A N E  +KIRD ++R+L++P+FVQ+EYRRHQD++
Sbjct:   11 LYDSPEDTTGGTQTAIQNRYCFWYKQKGNKQLT---TEDYESSIKQLASFQTVEHFWRIYNHLQRPDQVPIGTDYHLFKDGIKPAWEDSHNARGGLWMMRLKKGLASR--QELLLAMIGEQFDVGNEICGAVMSVRYSEDVVYVWNRNADNREAADKIRDQIRRILKLPNFVQLEYRRHQDSM 188
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: A0A7S2B9L2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9L2_9STRA)

HSP 1 Score: 240 bits (612), Expect = 4.560e-74
Identity = 107/194 (55.15%), Postives = 150/194 (77.32%), Query Frame = 1 
Query:  190 SASGPAYES--LYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            +A+ P Y    L +EPEDL   +QT IQNRY FW+ ++  Q +S   ++ +++ ++ + SFQTV+HFWR+Y+H+ RA  +P  TD HLF+DGIKPTWED SN +GG+ +IRL+KGLA+R WE L+L I+GEQFDVGNE+CGAV+S+RY+ED+IS+WNR+A NTE   KIRD ++RLL++P+F+  EY+RH D L
Sbjct:    7 AATAPRYSDAELVDEPEDLE--KQTAIQNRYVFWFMQR--QSKSAVGNDNFDANLQQIASFQTVQHFWRVYDHVQRATSLPQMTDFHLFKDGIKPTWEDPSNKQGGKWIIRLRKGLAARYWEELLLGIVGEQFDVGNEVCGAVLSIRYNEDIISIWNRNADNTEATSKIRDHMRRLLRLPAFISTEYKRHADAL 196
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: A0A6G0XTE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE8_9STRA)

HSP 1 Score: 233 bits (594), Expect = 7.180e-71
Identity = 101/168 (60.12%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:  262 IQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            IQN YCFWY +K + K + D  E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WEDA+N RGG+ +IR++KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IRDT+++LL +P FV +EY+RH  +L
Sbjct:   22 IQNTYCFWYMKKNSGK-TLDDQESYEKSIKEIGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKSGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 188
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: A0A1V9Z309_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z309_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.010e-69
Identity = 99/172 (57.56%), Postives = 135/172 (78.49%), Query Frame = 1 
Query:  253 QTLIQNRYCFWYYRKGAQ-KESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            +T +QN YCFWY +K    K + D  E+YE  IK +  F+TV+ FWR+Y+H++R + +PN TD HLF+ GIKP WEDA+N RGG+ +IR++KG++SR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IRDT+++LL +P FV +EY+RH  +L
Sbjct:    4 ETALQNAYCFWYMKKNTGGKAALDDQESYEKSIKELGEFKTVQGFWRLYDHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGISSRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVVLEYKRHDTSL 175
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: W4FZB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZB5_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.040e-69
Identity = 101/179 (56.42%), Postives = 137/179 (76.54%), Query Frame = 1 
Query:  229 PEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            P D  G  +  IQN Y FWY +K + K  +D  E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED +N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N+E   +IRDT+++LL +P FV +EY+RH  +L
Sbjct:   11 PVDTAG--EVPIQNTYTFWYMKKNSGKALED-QESYEKSIKEISEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 186
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: A0A485LDV3_9STRA (Aste57867_20004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDV3_9STRA)

HSP 1 Score: 229 bits (583), Expect = 3.720e-69
Identity = 99/171 (57.89%), Postives = 135/171 (78.95%), Query Frame = 1 
Query:  253 QTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            ++ IQN YCFWY +K + K     +E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WEDA+N RGG+ +IR++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IRDT+++LL +P FV +EY+RH  +L
Sbjct:   19 ESPIQNTYCFWYMKKNSGK-----TESYEKSIKELGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: D0MYJ6_PHYIT (Eukaryotic initiation factor 4E, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0MYJ6_PHYIT)

HSP 1 Score: 226 bits (575), Expect = 1.070e-68
Identity = 99/174 (56.90%), Postives = 135/174 (77.59%), Query Frame = 1 
Query:  244 GTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            GT +T IQN Y FWY ++     +K  SE+YE  IK +  F+TV+ FW+IYNH++R + +PN  D HLF+ GIKP WED++N RGG+ ++RL+KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IRDT++++L +P FV +EY+RH  +L
Sbjct:   18 GTTETPIQNMYTFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 189
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BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: A0A024TVS7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVS7_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.640e-68
Identity = 100/177 (56.50%), Postives = 137/177 (77.40%), Query Frame = 1 
Query:  235 DLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            D TG  ++ IQN Y FWY +K + K  +D  E+YE  IK +  F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED++N RGG+ +IR++KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IRDT++++L +P F  +EY+RH  +L
Sbjct:   12 DATG--ESPIQNTYTFWYMKKNSGKALED-QESYEKSIKEIAEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDSANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYKRHDTSL 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Match: G4YG94_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YG94_PHYSP)

HSP 1 Score: 223 bits (569), Expect = 7.320e-68
Identity = 98/174 (56.32%), Postives = 134/174 (77.01%), Query Frame = 1 
Query:  244 GTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNL 765
            G+ +T IQN Y FWY ++     +K  SE+YE  IK +  F+TV+ FW+IYNH++R + +PN  D HLF+ GIKP WED +N RGG+ ++RL+KG+ASR WE LVLAIIGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E   +IRDT++++L +P FV +EY+RH  +L
Sbjct:   12 GSAETPIQNMYSFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1166.1442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBW9_ECTSI2.990e-21094.29Novel cap binding protein nCBP n=2 Tax=Ectocarpus ... [more]
A0A835Z354_9STRA3.900e-8266.12Putative eukaryotic initiation factor 4E n=1 Tax=T... [more]
A0A7S2B9L2_9STRA4.560e-7455.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0XTE8_9STRA7.180e-7160.12Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z309_9STRA1.010e-6957.56Eukaryotic initiation factor 4E n=1 Tax=Achlya hyp... [more]
W4FZB5_9STRA2.040e-6956.42Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LDV3_9STRA3.720e-6957.89Aste57867_20004 protein n=1 Tax=Aphanomyces stella... [more]
D0MYJ6_PHYIT1.070e-6856.90Eukaryotic initiation factor 4E, putative n=11 Tax... [more]
A0A024TVS7_9STRA1.640e-6856.50Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
G4YG94_PHYSP7.320e-6856.32Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1166contigEcto-sp13_S_contig1166:14085..18702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score600.1
Seed ortholog evalue6.7e-169
Seed eggNOG ortholog2880.D8LBW9
Preferred nameEIF4E2
Model size1080
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000340,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0007275,GO:0007553,GO:0007554,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010566,GO:0010605,GO:0010608,GO:0010629,GO:0010817,GO:0010893,GO:0017148,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019899,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031625,GO:0032268,GO:0032269,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090030,GO:0090031,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000026,GO:2000112,GO:2000113
Exons7
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
Ec32 ortholog descriptionnovel cap binding protein nCBP
Ec32 orthologEc-20_003570.1
Cds size1080
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1166.1442.1prot_Ecto-sp13_S_contig1166.1442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1166 14085..18702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462614.075808-CDS-Ecto-sp13_S_contig1166:14084..141641681462614.075808-CDS-Ecto-sp13_S_contig1166:14084..14164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 14085..14164 +
1681462614.0890121-CDS-Ecto-sp13_S_contig1166:15140..153271681462614.0890121-CDS-Ecto-sp13_S_contig1166:15140..15327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 15141..15327 +
1681462614.0994682-CDS-Ecto-sp13_S_contig1166:15965..161181681462614.0994682-CDS-Ecto-sp13_S_contig1166:15965..16118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 15966..16118 +
1681462614.1104605-CDS-Ecto-sp13_S_contig1166:16608..166801681462614.1104605-CDS-Ecto-sp13_S_contig1166:16608..16680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 16609..16680 +
1681462614.1205268-CDS-Ecto-sp13_S_contig1166:17059..173021681462614.1205268-CDS-Ecto-sp13_S_contig1166:17059..17302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 17060..17302 +
1681462614.1311553-CDS-Ecto-sp13_S_contig1166:18006..181981681462614.1311553-CDS-Ecto-sp13_S_contig1166:18006..18198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 18007..18198 +
1681462614.1438053-CDS-Ecto-sp13_S_contig1166:18549..187021681462614.1438053-CDS-Ecto-sp13_S_contig1166:18549..18702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1166 18550..18702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1166.1442.1

>prot_Ecto-sp13_S_contig1166.1442.1 ID=prot_Ecto-sp13_S_contig1166.1442.1|Name=mRNA_Ecto-sp13_S_contig1166.1442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
LPNPPYTAPSHTRIKDMETLLANNHLGPDEGHLHSSLEPPTGGDHSNNNG
GGGAAATTDGLANSASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKG
AQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLF
RDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEI
CGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRR
HQDNLGAASVREERGGGGFPAASPGFGPRGGPPGGAWTRHGRGGGPRGMG
DRGDDHHHKDGERAAPAGGGGMPQETWARGPPEARDRDRDAGGFRGGGGG
GGMGGFRPPP
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mRNA from alignment at Ecto-sp13_S_contig1166:14085..18702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1166.1442.1 ID=mRNA_Ecto-sp13_S_contig1166.1442.1|Name=mRNA_Ecto-sp13_S_contig1166.1442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1166:14085..18702+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCAATCCACCCTACACCGCCCCGTCTCATACAAGGATCAAGGATAT
GGAAACTCTTTTGGCCAACAACCATCTTGGGTGAGGAGGCTACAGGCTAC
ACTTGAGAGCCAGAGAGCATCATGAGAGGATGTTGCGTCCACCGGTAGGC
TAGCCATGTTGGTAAACCAATCCGGAAAGCCAGCTGTCGCTTGACCTAAG
TGCACAACTGTAAAAGCCTGCCTGATGATGCGTGTGCTGCCCGCTTTCTG
AGCGGTTTTCGGGGATTGAAAGCATCATCTTATCCGGGACCACTTGACAT
CGGCAGCGCACGGCGCGGTACACGGAACATCTGTGTTCTCAAAAGCTCTG
GTCCTGCATCCCACCTTAGCTCACTACTGCTGTTGTTGTCGTATCGAGGT
CCGAGGGCCGGTTGGATTGCCACCGAGACTTACACATACGTCCTTTGAAC
GTGATGGTGTGTCTGAGGCCAGCGTTGGAACAATCTCTACTTGTTGGCGC
CACCAACATTCCCTCAACCCGTCGACGCCTCATCCCCCTGTACGCATACA
TACGGTCAGCAGCGGTATGCTACATGTACAACCTTGATCTTGTGTGGACT
TGTAGACTACATCATGCTATCGAGTGTGGTCGCGAGACTGTTCTTTGTCT
TCCCACGCTCCCCTGCGTCTCCCATGCGTGAACCGCCGTCACTCTCTCGT
ATTCGTACAACATCGATCCCATTGGTTGCCCGTCTTCAACAACCTGATTG
GTTCGCTCGTGAGAATGAAGCCGGCTGGGGCGTGAGACGCTCTCTCGCTG
TAATTGGTCCGTCCCGGGGAGGCAGGGAGGCACCTTCCCTGCTACCCGTT
GCAACTTTTCCTTCGAAAGTTTTATAATCGGTTGATCACGTCATTCTCCA
CCCTGATGATAGTTTTTTTCTTGGGTGCTTTGTCGCCCTATCGGGAAGAT
CTTGGCGCCTCGGTGCCCTACAGGTCGCCCCCGAATCCTCTTTTTTACCT
GTAGCGCACTCGAAAGGTGCTGACTGCTGTTCATTGCTGCTCTCTGTTGT
ATTTAGTCCCGATGAGGGGCATCTGCACTCGTCCCTAGAGCCACCAACGG
GGGGAGACCACTCAAACAACAACGGCGGCGGCGGCGCGGCCGCCACCACC
GACGGCCTCGCCAATAGCGCGAGCGGACCGGCGTACGAGTCCCTGTACAA
CGAGCCGGAGGATCTGACAGGCACCCGCCAGACGCTCATACAGGTTGGTG
TCCCGCGTCTGCTGTAAAAAAGTCTGGCGTTCATCGATTCCCGGCGGCAC
GTCTAATCGTTCAACGGAGTTTCTGTCGTCTTGTTTCGGCTTCGACTGGC
ATCGCTCGAGACTTCGTCGCCCGAGGCCTTCAAGATTTCAATATTTCCCT
CTTAGTGCCTTCCCCGGGCGGAAGGATCTCTACTGATGGTAAATTTCTCC
CTCAAAAACCACAACCGCGCTACAGTACTGATGAAGTGGTGTTCGGAGCG
GCGGTGCGCTGGTTGCTTGCTTGCTTGTGTGCACGTAGATGGTCGTCTGG
CCCTGATGCTCACCGCCGCCTCGTTATCTGACACCCACCAATCCTCCCCT
GTAAGCCTCACTACAAACCTAGAACAACCCAGAGTTACGACCGCTCGAAG
GAATAGGTGCGAAGCAAACATGACGACGACAATTGATCTCGCAAGCAAAC
GGGGATATTCTCAAGTGGCTGGCGATCCTGGGATACCTCGACATTTCTTC
CGTATTCTCCGCGAGGCACGTCGCTTGCCCGGTGGAGACCACGCCTACCA
CACCCTGCGCACGTGTAGGCTATAACACACCACATACGACACTTTTTTCC
CTCGCATGTTTTTCGCGGTTGGTGGTGGCAGAACCGGTACTGCTTCTGGT
ACTACCGGAAGGGTGCGCAGAAGGAGAGCAAGGACCCCAGCGAGGCGTAT
GAGAGCGGCATCAAGGTCGTCGACAGCTTCCAGACTGTGGAGCACTTCTG
GCGCATCTACAACCACATCCTCCGCGCCGACCAGGTGTGTAGATGATACA
ATTGTGGCTTTTGTGCGAGTCTCTGCAGAACATCTGACGACTGTTACACG
GTACTGTATGTATATGATAGCTTTTGTTTTTCTGACCGCCGTAAAGCAGT
AGTATGTATGATAGTGTTTTTTTTTTTCTTCTACATTACTCTGTTGCTGG
CCTGCCTCTGTATAAGCTGTCGACACGACATTGCCATTTTCCCTGTAGAT
ACTGGACAGGGTAAATAGCACCAGTATCAACAGCAGGCTAAGCGTTATAC
GCTGGCCCTTCCGACGGTGCCCCGGACTCATGTCACAGCTTACTTCTCTG
TTCCCGCTGCGTATGAGAGATCACCACTTCGTATTGAGAGCAGTCTACAA
ACCTCTTACGGCTGCCTCTCGCATTTGTCATGTGCCCTCAAAACTGTCTC
TCGTGTTTCGTCTTGTTTTTGGGCCTGTTATTTTCCCGCCCTTGCTTGCT
TTCTTCCTCGCTTCCTTCCTTCAGGTGCCTAACGCAACCGATGTTCACCT
GTTCAGAGACGGCATCAAGCCCACCTGGGAAGACGCCTCCAATTCGGTGA
GGGAACGACGCTTGGTGGCTGCAGCGTTTGGTACAGCTGCTCGGTCGAAT
CGACACCATGGCAGCCCGAGAAGCGCGAGACAGTAGATGCTCTTTACACT
TTGGAACGAACTCGAAGAACGTGTCAAATATCGAGATACGATTGAAGAAG
CTGATGCAGAGATTTCCGTGTAGCGAGTTGCACTCAGCTGTGCTCTTTTT
CATCTTTGTTGGATCTCTTCAATTCCGTCGTGGTTGTTTCGTTGCGGCTT
TTTTTTGTTTCCAAGAGTCCCACCGCCGTCGACAGATCTGGGACCACCAT
TTTCGCAAAGCCCCCCACCCCTTAATCTTCGCCCATCTCCATTTCTTTGT
TGGGGGCGTGGGTTGTCTCTCCCAGAGGGGCGGGCAGCTGCTGATACGCC
TCAAGAAGGGGCTGGCGAGCCGCGCCTGGGAGAGCCTAGTGCTGGCCATC
ATCGGGGAGCAGTTCGACGTCGGCAACGAGATCTGCGGCGCCGTGGTGTC
TGTACGGTACAGCGAGGACGTCATATCGGTGTGGAACCGTTCCGCCTCCA
ACACCGAGGGCATCGAGAAGATCCGGGACACCGTCAAGCGCCTCCTTCAG
ATACCGTCCTTCGTGCAGGTGGGGGGGTACTCATAGTCGTGCATGCCGTA
GACGTTAGCCCATTGGTCTTTTTTGGGGGAGGGGGCGTTGTTATCGTTGG
TGTGATGTCTCCCGGTTGGCAGGTTAAATGAAAAGTGTTCTTGTTTTTTT
AAACTCGTCGATGTCGTTGTTGTTGATTTGACGTCTTCTCGTTGTAGGTG
AAACTAAACGGCGTTTAGTTGCACTGCTTGTAGCGGGAGCCCTTGGGGGG
AGGGGGGTCGCACCTAGGCGGTGTGAGGGGTACACACGAAAGGAAGCGAG
AGTGAGAGGGCGAGCGGAAAGGGAGAAGGATTCGACTAGCCCAAGCAATG
CCAGAATCCTGCTCCAGAGCGCTCGCGGTTGTCGTTGTCGCCGCCAGTCC
TTGACTGTGTGGACAACGAAGTCGAGGGATATCAAATCATGGGTGTCGTG
ATTTGATTTGTGTTTCGTCGAACAATCATCATCGCGGCAAGGGCGTTGCT
GGTCGATCCATACGCTAGTCCACCGTTAGCCACACACAGACTGCTGCCTC
GATAAATTTGTGCAACGGTCGAAACGTAGATTTAGAACGCTGCTGCCGAG
CCAGTACTTTCGCAGAGCCCATAGCTGAAGGTTGCCGTGGTTGCTTTCTG
CGCCGTTGAAGATCACCCGCCCCCGTCCCCACCCCCGTCCCCTCTGAAAA
TATCTCGTCGTAAACACGACAGGTGGAGTATAGGCGTCACCAGGACAATC
TCGGGGCGGCCAGCGTGAGGGAGGAGAGGGGAGGGGGGGGATTCCCGGCT
GCATCCCCAGGTTTCGGGCCCCGAGGCGGACCCCCCGGCGGCGCCTGGAC
ACGCCACGGCAGGGGTGGCGGCCCGCGCGGGATGGGTGATCGTGGGGATG
ACCATCACCACAAGGTGATTAGACCATGGGTCAGGTTTCGTAGATTGGAT
GCGTGTAGTTGAGTGGGAGTCGCGGTATGTATTTTTCGCTTGTGTTCTGA
GAGCGCAGGTGGTGTACAGATATTAGCCCGTCTGATAGTAACATGTCTTC
CGGTTTTTACGCTGCAAAGATTGGCCTACACGCCTTCTCTCTTCGCTGTA
AGTTGCGCTTGCTGTGTGCAGCAACTATATTGTATTCTTACGAAGTAACT
TTTTTGCTCCCTGCGCCGTGGAAAGCGCCAGGCAATTTCCACCCCTCCTG
TAAGAAATATAATAAAACTCAAGCGTAACGAAAATAACAAAGTCCGCCCC
GTTTTTACCTCGCAGGACGGAGAACGCGCCGCACCCGCGGGCGGTGGCGG
AATGCCTCAGGAAACCTGGGCCAGGGGGCCGCCGGAGGCAAGGGACCGAG
ACCGCGACGCCGGGGGGTTCCGCGGAGGGGGCGGCGGAGGGGGGATGGGG
GGATTCCGTCCCCCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1166:14085..18702+

>mRNA_Ecto-sp13_S_contig1166.1442.1 ID=mRNA_Ecto-sp13_S_contig1166.1442.1|Name=mRNA_Ecto-sp13_S_contig1166.1442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1166:14085..18702+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCAATCCACCCTACACCGCCCCGTCTCATACAAGGATCAAGGATAT
GGAAACTCTTTTGGCCAACAACCATCTTGGTCCCGATGAGGGGCATCTGC
ACTCGTCCCTAGAGCCACCAACGGGGGGAGACCACTCAAACAACAACGGC
GGCGGCGGCGCGGCCGCCACCACCGACGGCCTCGCCAATAGCGCGAGCGG
ACCGGCGTACGAGTCCCTGTACAACGAGCCGGAGGATCTGACAGGCACCC
GCCAGACGCTCATACAGAACCGGTACTGCTTCTGGTACTACCGGAAGGGT
GCGCAGAAGGAGAGCAAGGACCCCAGCGAGGCGTATGAGAGCGGCATCAA
GGTCGTCGACAGCTTCCAGACTGTGGAGCACTTCTGGCGCATCTACAACC
ACATCCTCCGCGCCGACCAGGTGCCTAACGCAACCGATGTTCACCTGTTC
AGAGACGGCATCAAGCCCACCTGGGAAGACGCCTCCAATTCGAGGGGCGG
GCAGCTGCTGATACGCCTCAAGAAGGGGCTGGCGAGCCGCGCCTGGGAGA
GCCTAGTGCTGGCCATCATCGGGGAGCAGTTCGACGTCGGCAACGAGATC
TGCGGCGCCGTGGTGTCTGTACGGTACAGCGAGGACGTCATATCGGTGTG
GAACCGTTCCGCCTCCAACACCGAGGGCATCGAGAAGATCCGGGACACCG
TCAAGCGCCTCCTTCAGATACCGTCCTTCGTGCAGGTGGAGTATAGGCGT
CACCAGGACAATCTCGGGGCGGCCAGCGTGAGGGAGGAGAGGGGAGGGGG
GGGATTCCCGGCTGCATCCCCAGGTTTCGGGCCCCGAGGCGGACCCCCCG
GCGGCGCCTGGACACGCCACGGCAGGGGTGGCGGCCCGCGCGGGATGGGT
GATCGTGGGGATGACCATCACCACAAGGACGGAGAACGCGCCGCACCCGC
GGGCGGTGGCGGAATGCCTCAGGAAACCTGGGCCAGGGGGCCGCCGGAGG
CAAGGGACCGAGACCGCGACGCCGGGGGGTTCCGCGGAGGGGGCGGCGGA
GGGGGGATGGGGGGATTCCGTCCCCCCCCC
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