mRNA_Ecto-sp13_S_contig11659.1439.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI) HSP 1 Score: 307 bits (787), Expect = 6.660e-104 Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 1
Query: 4 CAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGRICLNSKNDLMDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRLGWADPTDLAFIRRFLDTKTASSYDPQVLYSDAEVSRQL 480
CAGTTLREVLTTWAKLEGW+GAIVEYCRSKTFTNAGRICLNS+NDLM+P+REKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSV FVGQSMRSRL WADPTDLAFIRRFLD+KTA+SYDPQV+YSD E+S +
Sbjct: 2 CAGTTLREVLTTWAKLEGWNGAIVEYCRSKTFTNAGRICLNSQNDLMNPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMRSRLKWADPTDLAFIRRFLDSKTANSYDPQVMYSDEEMSAMV 160
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE) HSP 1 Score: 304 bits (779), Expect = 3.990e-101 Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 1
Query: 1 QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGRICLNSKNDLMDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRLGWADPTDLAFIRRFLDTKTASSYDPQVLYSDAEVSRQL 480
+CAGTTLREVLTTWAKLEG +GAIVEYCRSKTFTN GRICLNS+NDLMDP+REKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSV FVGQSM+SRLGWADPTDLAFIRRFLD++TA+SYDPQVLYSD E+S +
Sbjct: 111 KCAGTTLREVLTTWAKLEGLNGAIVEYCRSKTFTNVGRICLNSQNDLMDPIREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVAFVGQSMKSRLGWADPTDLAFIRRFLDSETANSYDPQVLYSDEEMSAMV 270
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI) HSP 1 Score: 155 bits (391), Expect = 4.340e-43 Identity = 67/119 (56.30%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 115 ICLNSKNDLMDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRLGWADPTDLAFIRRFLDTKTASSYDPQVLYSDAEVS 471
ICLN +N L D ++W VAG+++LAGHFLWD R YVTPP+L++T LR+PLELFVS++QF H+ ET +L+ + FV +MR RLGW DP+D+ F+RRFL T A+SYDPQ++Y+ + S
Sbjct: 111 ICLNDQNALRDSASQRWEVAGTRVLAGHFLWDLRQYVTPPHLLITMLRDPLELFVSAKQFKHREETASLEAAADFVASNMRGRLGWEDPSDIGFVRRFLGTDAANSYDPQLVYTKEQSS 229
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.880e-36 Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 1 QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTN-------AGRICLNSKNDL-MDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRLGWADPTDLAFIRRFLDTKTASSYDPQVLYSDAE 465
+CAGT+LREV +AK GW+GA++ C SKT IC+ ++ D +WLV+G+K+LAGHF WDFR PPYLMVTTLRNPLELFVS+ QF H+ ET+TL + FV MR+ LG L FIR FL+ A Y+P+ +Y+ E
Sbjct: 99 KCAGTSLREVFMAFAKTNGWTGAVIAGC-SKTQKEFQFHDPPGSVICVRHEDHRPKDENIGRWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTILGLEGLGQLGFIRVFLNDTGAVGYNPRGVYTHNE 260
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI) HSP 1 Score: 124 bits (311), Expect = 6.320e-32 Identity = 70/149 (46.98%), Postives = 90/149 (60.40%), Query Frame = 1
Query: 40 WAKLEGWSGAIVEYC--RSKTFT----NAGRICLNSKNDL-MDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRLGWADPTDLAFIRRFLDTKTASSYDPQVLYSDAE 465
+AK GW+GA++ C R K F IC+ ++ D KWLV+G+K+LAGHF WDFR PPYLMVTTLRNPLELFVS+ QF H+ ET+TL + FV MR+ LG L FIR FL+ A Y+P+ +Y+ E
Sbjct: 3 FAKTNGWTGAVIAGCSKRQKEFQFHDPPGSIICVRHEDHRPKDDNIGKWLVSGTKVLAGHFFWDFRLMAAPPYLMVTTLRNPLELFVSALQFKHRDETRTLAGATRFVTSQMRTILGLEGLGQLGFIRVFLNDTGAVGYNPRGVYTHNE 151
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.060e-26 Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGR-ICLNSKNDLMDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRL 366
+CAG+TLR +L WA+ E GAIV C +T+ R ICL + +PV+ + L++ K+LAGHFLW F+ ++ PYLMVT LRNPLE++VS+QQ+ HK +TKTL+ + FV ++MR L
Sbjct: 48 KCAGSTLRRMLVAWAEAEDELGAIVHRCN---YTSEAREICLAHFKLVDEPVQLE-LLSRQKVLAGHFLWGFQRHLRRPYLMVTALRNPLEVYVSAQQYTHKRKTKTLEKAQAFVSKAMRKTL 166
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE) HSP 1 Score: 105 bits (263), Expect = 9.700e-24 Identity = 60/138 (43.48%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 1 QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGRICLNSKNDLMDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVT-----FVGQSMRSRLGWADPTDLAFI 399
+CAG+TLR++ WAK EG SGAIV C G ICL + + V+ K L+ K+LAGHF+W F+ V P+LMVT+LRNPLE FVS +QF+H T+TL+ + FV +M + LG P +A +
Sbjct: 161 KCAGSTLRQMFVDWAKAEGASGAIVTSCDE--VQKEGVICLAKHELIKESVQMKMLLK-QKILAGHFIWGFQRLVEKPFLMVTSLRNPLEAFVSGRQFLHPDMTETLEQASAAHAQAFVSYAMLNALGIDGPGHVAML 295
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.610e-16 Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 1 QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGRICLNSKNDLMDPVREKWLVAGSKLLAGHFLWD-------------------FRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRL 366
+C GTTLR ++ WA EG A V C + LN K L+ P ++ +A K+LAGHF W F+ Y P+ +VTTLRNPLELFVS +Q++++A T TL +V V ++MR L
Sbjct: 70 KCGGTTLRRLMCDWANSEGLPCATVAGCGHLSLKERKVCLLNYK--LIFPEQQGEFIARQKVLAGHFRWGESRVTSACHTVTRTLFASGFQVYAAEPHWLVTTLRNPLELFVSGEQYLNRATTATLSKAVQVVERAMRKSL 208
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.090e-15 Identity = 49/157 (31.21%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 1 QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGRICLNSKNDLMDPVREKWLVAGSKLLAGHFLWDFRHYVTPPYLMVTTLRNPLELFVSSQQFMHKAETKTLDDSVTFVGQSMRSRL-------------GWADPTDLAFIRRFLDTKTASS 432
+CAG++LR +L WA+ + IV C + + G+ICL + L++ + + +++AGHF W F+++V PY+M TTLRNPLELFVS QQ++++ ++ +V+ V ++ + G + + FI R +D A+S
Sbjct: 63 KCAGSSLRHLLRDWAEAKEQDIGIVVRC-TDVVSKTGKICLKH-HSLINERFQAPFIRLHQVVAGHFTWGFQNHVRQPYVMFTTLRNPLELFVSGQQYLNRKASRHFAHAVSLVEDTILRAIKQHQLRGDVMVPEGMGNTKSVGFIYRLVDPVQANS 217 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11659.1439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11659.1439.1 >prot_Ecto-sp13_S_contig11659.1439.1 ID=prot_Ecto-sp13_S_contig11659.1439.1|Name=mRNA_Ecto-sp13_S_contig11659.1439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp QCAGTTLREVLTTWAKLEGWSGAIVEYCRSKTFTNAGRICLNSKNDLMDPback to top mRNA from alignment at Ecto-sp13_S_contig11659:591..5333- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11659.1439.1 ID=mRNA_Ecto-sp13_S_contig11659.1439.1|Name=mRNA_Ecto-sp13_S_contig11659.1439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11659:591..5333- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11659:591..5333- >mRNA_Ecto-sp13_S_contig11659.1439.1 ID=mRNA_Ecto-sp13_S_contig11659.1439.1|Name=mRNA_Ecto-sp13_S_contig11659.1439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11659:591..5333- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |