mRNA_Ecto-sp13_S_contig11658.1438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11658.1438.1 vs. uniprot
Match: D8LR55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR55_ECTSI) HSP 1 Score: 972 bits (2513), Expect = 0.000e+0 Identity = 705/842 (83.73%), Postives = 718/842 (85.27%), Query Frame = 1
Query: 28 MANMLAWETPLADENGNNSQLSWSSPGASEAEAAEPAGGRGAGVVIARRTNLAGDSDFDLSDDDDAIALLKDDLRTTTERFFDRLPRQQQRAGRRASAIVPTGASPGGDSIHGNSGSSTVGGVGVLRQQQSWSVLTELEKGVGGLIRRPAGSTSTSLRSPEGXXXXXXXS------LTADGGATLPSPDRXXXXXXSASPTGPSSPRGGRDVLPRQRRPPRDPKTSVKDLKARSDEAARTLEALKVLILQERLPADNGKGEVSNRHGGRDGKLGPVDAGQISAEDSSTSTLAGDGXXXXXXXXXX--LGAKHMELLAKAMDDLQQINAELNAELRASRRXXXXXXXXXXXXXXXXXXXXXX---ASVSWRLQPHGRRTSGERPPKRLSQASGRSAXXXXXXXXXXXXXXVGSLARQSRSSSDLLRHRRSEVGQAEPMSCGVPRHRVQLGNGGDNNVVYFELAITQARSTWTLERKMSEFVELRESLVATATDLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKTLADARRDHRRKAEARVPRLPESPKSWFDSGIWSVMYARRREEKLTELKVHLASWLATILADRELVSPDLVSFLGGDSGGMQAHPVVEDVLSGCDSLTGGEWTDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSDELNSLRGSLCAPDEWDVTKSRSGSGGDLXXXXXXXXXXXXXXSVSPRDRLEKAMVTRLSVQARSGGAGAARGVTSFSGMVVSGQGGEVAAYGXXXXXXXXXXXXXXXX------DPCLTSTLSAAMETPRKPRAPSPSSPTRRVTLDAFFQPPT 2502
MANMLAWETPLADENGN+SQ SWSSP ASEAE GAGVVIARRTNLAGDSDFDLSDDDDAIALLKDDLRTTTERFFDRLPRQQQ+AGRRASAIVPTG GD + NSGSSTV GVG LR QQSW+VLTELEKGVGGLIRRPAG+TST LRSPEG XXXXXX TADG ATLP XXXXXXSASP GPSSPRGGRDVLPRQRRPPRDPKTSVKDLK RSDEAARTLEALKVLILQERLPAD GKGEVS+ HGGR+GKL PVDAGQI+AEDS XXXXXXXXXX LGAKHMELLAKAMDDLQQINAEL XX XXXXXXXXXXXX ASVSWRLQ HGRRTSG+RPPKRLSQASGRS XXXXXXXXXXX VG LARQ RSSSDLLR RRSEVGQAEPMSCGVPRHRVQLGNGGDNNVVYFELAITQARSTWTLERKM EFVELRESLVATATDLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D +T+ADARRDHRRKAEARVP LPESPKSWFDSGIWSVMYARRREEKLTELKVHLASWLATILADRELVSPDLVSFLGGDSGGMQAHPVVEDVLSGCDSLTG EWTDP XXXXXXXXXXXXXXXXXXXXX LGSDELNSLRGSLCAPDEWDVTKSRSGS XXXXXXXXXXXXXXSVSPRDRLEKAMVTRL VQARSGGAGAARGVTSFSG+V SGQGGEVAAYG XXXXXXXXXXXX DP LTSTLSA METPR+PRAPSPSSPTRRVTLDAFFQPPT
Sbjct: 1 MANMLAWETPLADENGNSSQPSWSSPRASEAEXXXXXXXXGAGVVIARRTNLAGDSDFDLSDDDDAIALLKDDLRTTTERFFDRLPRQQQKAGRRASAIVPTG----GDGVRRNSGSSTVSGVGGLRHQQSWNVLTELEKGVGGLIRRPAGTTSTGLRSPEGGXXXXXXXXXXXXXFTADGSATLPXXXXXXXXXXSASPNGPSSPRGGRDVLPRQRRPPRDPKTSVKDLKVRSDEAARTLEALKVLILQERLPADGGKGEVSHGHGGRNGKLWPVDAGQIAAEDSXXXXXXXXXXXXXXXXXXXXGLGAKHMELLAKAMDDLQQINAELXXXXXXXXXXXTGGRDPHXXXXXXXXXXXXASSAASVSWRLQLHGRRTSGQRPPKRLSQASGRSXXXXXXXXXXXXAG-VGPLARQPRSSSDLLRQRRSEVGQAEPMSCGVPRHRVQLGNGGDNNVVYFELAITQARSTWTLERKMLEFVELRESLVATATDLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSSKKS-DSRTVADARRDHRRKAEARVPPLPESPKSWFDSGIWSVMYARRREEKLTELKVHLASWLATILADRELVSPDLVSFLGGDSGGMQAHPVVEDVLSGCDSLTGAEWTDPWSDXXXXXXXXXXXXXXXXXXXXXD-----------LGSDELNSLRGSLCAPDEWDVTKSRSGSXXXXXXXXXXXXXXXXXXSVSPRDRLEKAMVTRLFVQARSGGAGAARGVTSFSGIVASGQGGEVAAYGCEDEXXXXXXXXXXXXXXXXIQDPGLTSTLSAPMETPRQPRAPSPSSPTRRVTLDAFFQPPT 825
BLAST of mRNA_Ecto-sp13_S_contig11658.1438.1 vs. uniprot
Match: A0A6H5KNZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ4_9PHAE) HSP 1 Score: 944 bits (2439), Expect = 0.000e+0 Identity = 703/875 (80.34%), Postives = 721/875 (82.40%), Query Frame = 1
Query: 28 MANMLAWETPLADENGNNSQLSWSSPGASEAEAAEPAGGRGAGVVIARRTNLAGDSDFDLSDDDDAIALLKDDLRTTTERFFDRLPRQQQRAGRRASAIVPTGASPGGDS----------------------------------IHGNSGSSTVGGVGVLRQQQSWSVLTELEKGVGGLIRRPAGSTSTSLRSPEGXXXXXXXS---------LTADGGATLPSPDRXXXXXXSASPTGPSSPRGGRDVLPRQRRPPRDPKTSVKDLKARSDEAARTLEALKVLILQERLPADNGKGEVSNRHGGRDGKLGPVDAGQISAEDSSTSTLAGDGXXXXXXXXXX--LGAKHMELLAKAMDDLQQINAELNAELRASRRXXXXXXXXXXXXXXXXXXXXXXA-SVSWRLQPHGRRTSGERPPKRLSQASGRSAXXXXXXXXXXXXXXVGSLARQSRSSSDLLRHRRSEVGQAEPMSCGVPRHRVQLGNGGDNNVVYFELAITQARSTWTLERKMSEFVELRESLVATATDLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DGKTLADARRDHRRKAEARVPRLPESPKSWFDSGIWSVMYARRREEKLTELKVHLASWLATILADRELVSPDLVSFLGGDSGGMQAHPVVEDVLSGCDSLTGGEWTDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGSDELNSLRGSLCAPDEWDVTKSRSGSGGDLXXXXXXXXXXXXXXSVSPRDRLEKAMVTRLSVQARSGGAGAARGVTSFSGMVVSGQGGEVAAYGXXXXXXXXXXXXXXXX---DPCLTSTLSAAMETPRKPRAPSPSSPTRRVTLDAFFQPPT 2502
MANMLAWETPLADE+GN S LSWSSPG SEAEAAEPAG AGVVIAR TNLAGDSDFDLSDDDDAIALLKDDLRT F DRLP RRASAIV TGASPGG S + NSGSSTVGGVG LR QQSW+VLTELEKGVGGLIRRPAG+TS LRSPEG XXXXXX TADGGATLPSPD XXXX SASP GPSSPR GR VLPRQRRPPRDPKTSVKD KARSDEAARTLEALKVLILQERLPAD+GKGEVSN+HGGRDGKL PVDAGQ SA DS XXXXXXXXXX L AKH++LLAKAMDDLQQIN ELNAELRASRR XXXXXXXXXXX S+S RLQPH RR G+R PKRLSQASGRSA XXXXXXXXX VG L RQ+RSSSDLLRHRRSEVGQAEPMSCGVPRHRVQLGNGGDNNVVYFELAITQARSTWTLERKMSEFVELRESLVATATDLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DG+TL DARRDHRRKAEARVP LP SPKSWFDSGIWSVMYARRREEKLTELKVHLASWLATILADRELVSPDLVSFLGGDSGGM+AHPVVEDVLS CDSLTG E TDP XXXXXXXXXXXXXXXXXXXXXXXXXXX LGSDELNSLRGSLCAPDEWDVTKSRSGSGGDL XXXXXXXXXXX SVS RDRLEKAMVTRLSVQARSG AGAARG+TSF G+V SGQGGEVAAYG XXXXXXXXXXXX DP LTST+SA METPR+PRA SPSSPTRRVTLDAFF+PPT
Sbjct: 1 MANMLAWETPLADESGNKSLLSWSSPGPSEAEAAEPAGASSAGVVIARMTNLAGDSDFDLSDDDDAIALLKDDLRTXXXXFXDRLPXXXXXXSRRASAIVATGASPGGASASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRNSGSSTVGGVGGLRHQQSWNVLTELEKGVGGLIRRPAGTTSVGLRSPEGGXXXXXXXXXXXXXXXXFTADGGATLPSPDXXXXXVGSASPNGPSSPRRGRYVLPRQRRPPRDPKTSVKDFKARSDEAARTLEALKVLILQERLPADDGKGEVSNQHGGRDGKLWPVDAGQGSAADSXXXXXXXXXXXXXXXXXXXXXLAAKHIKLLAKAMDDLQQINTELNAELRASRRRTTGGRDPHHRXXXXXXXXXXXXXSISQRLQPHDRRAFGQRSPKRLSQASGRSAAXXXXXXXXXA---VGPLVRQARSSSDLLRHRRSEVGQAEPMSCGVPRHRVQLGNGGDNNVVYFELAITQARSTWTLERKMSEFVELRESLVATATDLAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDGRTLEDARRDHRRKAEARVPPLPVSPKSWFDSGIWSVMYARRREEKLTELKVHLASWLATILADRELVSPDLVSFLGGDSGGMRAHPVVEDVLSDCDSLTGAERTDPWSDSGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXX-LGSDELNSLRGSLCAPDEWDVTKSRSGSGGDLGPXXXXXXXXXXXSSVSSRDRLEKAMVTRLSVQARSGEAGAARGITSFFGIVASGQGGEVAAYGCEDEXXXXXXXXXXXXXIQDPGLTSTISAPMETPRQPRASSPSSPTRRVTLDAFFRPPT 871 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11658.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11658.1438.1 >prot_Ecto-sp13_S_contig11658.1438.1 ID=prot_Ecto-sp13_S_contig11658.1438.1|Name=mRNA_Ecto-sp13_S_contig11658.1438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=826bp MANMLAWETPLADENGNNSQLSWSSPGASEAEAAEPAGGRGAGVVIARRTback to top mRNA from alignment at Ecto-sp13_S_contig11658:829..3333+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11658.1438.1 ID=mRNA_Ecto-sp13_S_contig11658.1438.1|Name=mRNA_Ecto-sp13_S_contig11658.1438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11658:829..3333+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11658:829..3333+ >mRNA_Ecto-sp13_S_contig11658.1438.1 ID=mRNA_Ecto-sp13_S_contig11658.1438.1|Name=mRNA_Ecto-sp13_S_contig11658.1438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2478bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11658:829..3333+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |