mRNA_Ecto-sp13_S_contig1165.1431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D7G0R9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R9_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.610e-58 Identity = 99/140 (70.71%), Postives = 107/140 (76.43%), Query Frame = 1
Query: 1 HGHAFYPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
HGHA YPPRE PLKDIVTNYSSLT S KWLLS IMLLVF QVLQS WSM KYFKQD VKTL S G T +W LL LVQ+ASALSFAVRAP+ E ++ H D V++AKEVIG+DGVRPSMHS LHY EAV NH
Sbjct: 10 HGHALYPPREKPLKDIVTNYSSLTGSNKWLLSPIMLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEDLLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDM-VHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 148
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D7G5N3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N3_ECTSI) HSP 1 Score: 129 bits (324), Expect = 5.170e-36 Identity = 70/106 (66.04%), Postives = 79/106 (74.53%), Query Frame = 1
Query: 103 MLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
MLLVF QVLQS WSM KYFKQD VKTL S G T +W +LL LVQ+ASALSFAVRAP+ E ++ H D V++AKEVIG+DGVRPSMHS LHY EAV NH
Sbjct: 1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDM-VHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 105
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.870e-24 Identity = 61/139 (43.88%), Postives = 81/139 (58.27%), Query Frame = 1
Query: 4 GHAFYPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
G YPP PLKDI TNYSSL S KWLL SI+LLV VL ++ +Y K ++ L G L L+Q ASAL+FAVR+P+ Y R++ ME V + E++GR GVR ++HS LHY++A+ H
Sbjct: 411 GSTLYPPATAPLKDICTNYSSLKGSDKWLLGSILLLVSRCVLHDATALKEYVKPRELQALKDTWGGEQAVLAQLRKLLQVASALTFAVRSPSFYKAERKKL-MEHARDTVGVYAELLGRGGVRTTVHSALHYVQAIEEH 548
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.710e-22 Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAP-VYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
YPP LKDI+T+Y SLT S KW L SIMLLVF VLQ SM + K+ +K + GT ++L L+Q S LSFA+RAP+ + R+ DAP V +++GR G RP++HS+LH +EA+ H
Sbjct: 291 YPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMRRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLH 426
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 4.750e-21 Identity = 62/135 (45.93%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
YP LKDIV+NYSSLT S KW L SIMLLVF VL M K K+ V L GT + L LVQ AS LS+AVRAP+ + + D + +K V+GR G RP++HSILH EA+ H
Sbjct: 9 YPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLV----MKKNMKRQDVNDLREMWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSK-VMGRTGSRPTIHSILHTTEAIRAH 138
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.300e-19 Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
YPP +KDIVTNY+SLT S KW L SIMLLVF VLQ+ +M + + L + GT +L L+ +S LSFA+RAP+ R+ DA +K ++GR G RP++HSILH +E + H
Sbjct: 859 YPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRRNMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSK-IMGRTGSRPTIHSILHTVETIRLH 992
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.350e-19 Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
YPP LKDIVTNY+SLT S KW L SIMLLVF VLQ+ +M + + L + GT + +L L++ AS LS A+RAP+ + DA K ++GR G RP++HSILH +EA+ H
Sbjct: 123 YPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMTR-----EINDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFK-IMGRTGSRPTIHSILHTVEAIRLH 251
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.030e-19 Identity = 58/135 (42.96%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
YP LKDIVTNYSSLT S KW L SIMLLVF VL + +M K K+ + L GT + L L++ AS LS AVRAP+ + + D V + +V+GR G RP++HS+LH +A+ H
Sbjct: 566 YPAGTERLKDIVTNYSSLTGSDKWTLQSIMLLVFRPVLANVGAMKKNMKRQDIAELRDVWGTDEKVLEVLQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDV-VGVYSKVLGRTGSRPTIHSVLHTSQAIRAH 699
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 2.950e-17 Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 4 GHAFYPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMD 324
G+ YPP PLKD V +YSSLT S KWLL+SI+LLVF V + +M Y K + L G++ E+ +SLL LVQ AS+LSFA+RAP+ + H D
Sbjct: 190 GNNLYPPGAEPLKDPVADYSSLTGSDKWLLASIVLLVFRAVFHTTATMEMYIKGRELGELVDDYGSMQEARDSLLQLVQAASSLSFALRAPSYNDVEIEQLHKHAQD 296
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5JWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD2_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 1.030e-14 Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPA 279
YP LKDIV+NYSSLT S KW L SIMLLVF VLQ +M K K+ + L GT + L LVQ AS LS+AVRAP+
Sbjct: 53 YPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLQDVRAMKKNMKRQDINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPS 140 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1165.1431.1 >prot_Ecto-sp13_S_contig1165.1431.1 ID=prot_Ecto-sp13_S_contig1165.1431.1|Name=mRNA_Ecto-sp13_S_contig1165.1431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp MNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERback to top mRNA from alignment at Ecto-sp13_S_contig1165:4075..5030+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1165.1431.1 ID=mRNA_Ecto-sp13_S_contig1165.1431.1|Name=mRNA_Ecto-sp13_S_contig1165.1431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1165:4075..5030+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1165:4075..5030+ >mRNA_Ecto-sp13_S_contig1165.1431.1 ID=mRNA_Ecto-sp13_S_contig1165.1431.1|Name=mRNA_Ecto-sp13_S_contig1165.1431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1165:4075..5030+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |