mRNA_Ecto-sp13_S_contig1165.1431.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1165.1431.1
Unique NamemRNA_Ecto-sp13_S_contig1165.1431.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D7G0R9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R9_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.610e-58
Identity = 99/140 (70.71%), Postives = 107/140 (76.43%), Query Frame = 1
Query:    1 HGHAFYPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            HGHA YPPRE PLKDIVTNYSSLT S KWLLS IMLLVF QVLQS WSM KYFKQD VKTL S  G  T +W  LL LVQ+ASALSFAVRAP+   E  ++ H    D  V++AKEVIG+DGVRPSMHS LHY EAV NH
Sbjct:   10 HGHALYPPREKPLKDIVTNYSSLTGSNKWLLSPIMLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEDLLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDM-VHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 148          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D7G5N3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.170e-36
Identity = 70/106 (66.04%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  103 MLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            MLLVF QVLQS WSM KYFKQD VKTL S  G  T +W +LL LVQ+ASALSFAVRAP+   E  ++ H    D  V++AKEVIG+DGVRPSMHS LHY EAV NH
Sbjct:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDM-VHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 105          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.870e-24
Identity = 61/139 (43.88%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    4 GHAFYPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            G   YPP   PLKDI TNYSSL  S KWLL SI+LLV   VL    ++ +Y K   ++ L    G        L  L+Q ASAL+FAVR+P+ Y   R++  ME     V +  E++GR GVR ++HS LHY++A+  H
Sbjct:  411 GSTLYPPATAPLKDICTNYSSLKGSDKWLLGSILLLVSRCVLHDATALKEYVKPRELQALKDTWGGEQAVLAQLRKLLQVASALTFAVRSPSFYKAERKKL-MEHARDTVGVYAELLGRGGVRTTVHSALHYVQAIEEH 548          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.710e-22
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAP-VYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            YPP    LKDI+T+Y SLT S KW L SIMLLVF  VLQ   SM +  K+  +K   +  GT     ++L  L+Q  S LSFA+RAP+   +  R+      DAP V    +++GR G RP++HS+LH +EA+  H
Sbjct:  291 YPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSMRRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLH 426          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.750e-21
Identity = 62/135 (45.93%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            YP     LKDIV+NYSSLT S KW L SIMLLVF  VL     M K  K+  V  L    GT  +    L  LVQ AS LS+AVRAP+       +  +   D   + +K V+GR G RP++HSILH  EA+  H
Sbjct:    9 YPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLV----MKKNMKRQDVNDLREMWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSK-VMGRTGSRPTIHSILHTTEAIRAH 138          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-19
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            YPP    +KDIVTNY+SLT S KW L SIMLLVF  VLQ+  +M +      +  L +  GT      +L  L+  +S LSFA+RAP+      R+      DA    +K ++GR G RP++HSILH +E +  H
Sbjct:  859 YPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRRNMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSK-IMGRTGSRPTIHSILHTVETIRLH 992          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.350e-19
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            YPP    LKDIVTNY+SLT S KW L SIMLLVF  VLQ+  +M +      +  L +  GT  +   +L  L++ AS LS A+RAP+       +      DA     K ++GR G RP++HSILH +EA+  H
Sbjct:  123 YPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMTR-----EINDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFK-IMGRTGSRPTIHSILHTVEAIRLH 251          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.030e-19
Identity = 58/135 (42.96%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH 420
            YP     LKDIVTNYSSLT S KW L SIMLLVF  VL +  +M K  K+  +  L    GT  +    L  L++ AS LS AVRAP+       +  +   D  V +  +V+GR G RP++HS+LH  +A+  H
Sbjct:  566 YPAGTERLKDIVTNYSSLTGSDKWTLQSIMLLVFRPVLANVGAMKKNMKRQDIAELRDVWGTDEKVLEVLQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDV-VGVYSKVLGRTGSRPTIHSVLHTSQAIRAH 699          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.950e-17
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    4 GHAFYPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGERRRRCHMELMD 324
            G+  YPP   PLKD V +YSSLT S KWLL+SI+LLVF  V  +  +M  Y K   +  L    G++ E+ +SLL LVQ AS+LSFA+RAP+       + H    D
Sbjct:  190 GNNLYPPGAEPLKDPVADYSSLTGSDKWLLASIVLLVFRAVFHTTATMEMYIKGRELGELVDDYGSMQEARDSLLQLVQAASSLSFALRAPSYNDVEIEQLHKHAQD 296          
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Match: A0A6H5JWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-14
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   16 YPPRETPLKDIVTNYSSLTCSKKWLLSSIMLLVF*QVLQSPWSMNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPA 279
            YP     LKDIV+NYSSLT S KW L SIMLLVF  VLQ   +M K  K+  +  L    GT  +    L  LVQ AS LS+AVRAP+
Sbjct:   53 YPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLQDVRAMKKNMKRQDINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPS 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1165.1431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G0R9_ECTSI1.610e-5870.71Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G5N3_ECTSI5.170e-3666.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWQ6_9PHAE5.870e-2443.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE4.710e-2244.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LH37_ECTSI4.750e-2145.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9M0_9PHAE1.300e-1942.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXT2_9PHAE2.350e-1942.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9E1_9PHAE6.030e-1942.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6M3_ECTSI2.950e-1745.79Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JWD2_9PHAE1.030e-1452.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1165contigEcto-sp13_S_contig1165:4075..5030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons4
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462613.235049-UTR-Ecto-sp13_S_contig1165:4074..42181681462613.235049-UTR-Ecto-sp13_S_contig1165:4074..4218Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1165 4075..4218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462613.2431045-CDS-Ecto-sp13_S_contig1165:4218..42211681462613.2431045-CDS-Ecto-sp13_S_contig1165:4218..4221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1165 4219..4221 +
1681462613.2506952-CDS-Ecto-sp13_S_contig1165:4420..45541681462613.2506952-CDS-Ecto-sp13_S_contig1165:4420..4554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1165 4421..4554 +
1681462613.2659364-CDS-Ecto-sp13_S_contig1165:4580..46291681462613.2659364-CDS-Ecto-sp13_S_contig1165:4580..4629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1165 4581..4629 +
1681462613.2741504-CDS-Ecto-sp13_S_contig1165:4940..50301681462613.2741504-CDS-Ecto-sp13_S_contig1165:4940..5030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1165 4941..5030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1165.1431.1prot_Ecto-sp13_S_contig1165.1431.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1165 4219..5030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1165.1431.1

>prot_Ecto-sp13_S_contig1165.1431.1 ID=prot_Ecto-sp13_S_contig1165.1431.1|Name=mRNA_Ecto-sp13_S_contig1165.1431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MNKYFKQDAVKTLNSARGTLTESWNSLLNLVQTASALSFAVRAPALYGER
RRRCHMELMDAPVYMAKEVIGRDGVRPSMHSILHYLEAVNNH
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mRNA from alignment at Ecto-sp13_S_contig1165:4075..5030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1165.1431.1 ID=mRNA_Ecto-sp13_S_contig1165.1431.1|Name=mRNA_Ecto-sp13_S_contig1165.1431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1165:4075..5030+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGTCACGCTTTTTACCCGCCACGCGAGACGCCACTGAAGGATATCGT CACGAATTACTCTTCCCTGACGTGTAGTAAAAAGTGGCTGCTGTCCTCCA TCATGCTGCTCGTCTTCTGACAGGTGCTTCAAAGCCCGTGGTCCATGGTG AGACCCCACTTGCAGAATAACTGAGATTTAGAAAAAATCCGCACTCATGT GGTCGCCCTTTCAGCGCAGTTAGTATTCGTATTCTTTGTGCGACGCCACC ACAGCTCTCTGACTCCACCCGACAAAAAAAATAATCCCCTCCCTCTGGCT TTCTCTAGAGATTGCCTCTCCCTCTCTCTGCCCACCCCTATCCCAGAATA AATACTTCAAACAGGACGCAGTGAAGACTCTGAACTCAGCGCGGGGCACC CTGACGGAGTCGTGGAACTCGTTGCTCAACCTGGTGCAAACCGCATCTGC GCTGTCGTTCGCCGTTCGAGCGCCAGCCCTGTGACAGCTACATCTGCTTG CGCGAGATATGGTGAGAGAAGACGACGTTGCCACATGGAACTGATGGACG CACCGGTGTGTGTATGTGGTCCATATGCCCTCGAGGAAGTAAGGAAGTAT GAGTATAGCGTCACCAACTTAATATAATATTGAGTTATCTCGACACGTTA CCCTAACCATAGCATTGAGTTTGCCTCACACATTACCCTAACCCGTACCA TCTGGACATGCGTATTCTGCACAGTACGACGGCCCTAAACCCCTCCTCAT CTCATCATATGGGATGTCGAATGTACCACACAGGTGAAGTCCACTTTTAC ACGCTACCCCCGATTCCCTCTTGTGTGTTGCTGTGTTGAAAAGTTATTTC TGCATATGTGCAATAGGTGTATATGGCGAAGGAAGTCATCGGGAGGGACG GCGTGAGGCCCTCGATGCACAGTATCCTCCACTATTTGGAAGCTGTAAAT AACCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1165:4075..5030+

>mRNA_Ecto-sp13_S_contig1165.1431.1 ID=mRNA_Ecto-sp13_S_contig1165.1431.1|Name=mRNA_Ecto-sp13_S_contig1165.1431.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1165:4075..5030+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAAATACTTCAAACAGGACGCAGTGAAGACTCTGAACTCAGCGCG
GGGCACCCTGACGGAGTCGTGGAACTCGTTGCTCAACCTGGTGCAAACCG
CATCTGCGCTGTCGTTCGCCGTTCGAGCGCCAGCCCTATATGGTGAGAGA
AGACGACGTTGCCACATGGAACTGATGGACGCACCGGTGTATATGGCGAA
GGAAGTCATCGGGAGGGACGGCGTGAGGCCCTCGATGCACAGTATCCTCC
ACTATTTGGAAGCTGTAAATAACCAC
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