mRNA_Ecto-sp13_S_contig11633.1415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11633.1415.1
Unique NamemRNA_Ecto-sp13_S_contig11633.1415.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A1B2YX85_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YX85_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 4.530e-16
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    7 LYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSLLNF 141
            ++TRYAPVR SS+ AST VT RLACVKPAASVHPEPGSNSSL NF
Sbjct:    1 MHTRYAPVRHSSSGASTNVTVRLACVKPAASVHPEPGSNSSLYNF 45          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: UPI001E5F3CDA (hypothetical protein n=1 Tax=Parabacteroides sp. 2_1_7 TaxID=457388 RepID=UPI001E5F3CDA)

HSP 1 Score: 71.2 bits (173), Expect = 4.010e-15
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 GRLYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSLLNF 141
            G+L+TRY+PVRRS A  +TP  PRLACVKP ASVHPEPGSNSSL   
Sbjct:    2 GKLHTRYSPVRRSPAGIATPAAPRLACVKPVASVHPEPGSNSSLFKL 48          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A1B2ZB17_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2ZB17_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.860e-12
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1
Query:    1 GRLYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNS 126
            GRL+T YAPVRR   SAST + PRLAC++PAASVHPEPGSNS
Sbjct:   20 GRLHTCYAPVRRFPFSASTKLLPRLACIRPAASVHPEPGSNS 61          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A0G0MFX9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Uhrbacteria bacterium GW2011_GWF2_39_13 TaxID=1618995 RepID=A0A0G0MFX9_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 2.290e-12
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 GRLYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSL 132
            G L TRYAP+RRS    +T   PRLACVKPAASVHPEPGSNSSL
Sbjct:   13 GMLLTRYAPLRRSPPDIATRDAPRLACVKPAASVHPEPGSNSSL 56          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A1B2YTP5_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YTP5_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 4.120e-12
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    7 LYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSL 132
            ++TRYAPVRRS  S ST   PRLAC++PAASVHPEPGSNS L
Sbjct:    1 MHTRYAPVRRSPPSTSTRAAPRLACIRPAASVHPEPGSNSPL 42          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: UPI000673CD16 (hypothetical protein n=1 Tax=Parabacteroides sp. 2_1_7 TaxID=457388 RepID=UPI000673CD16)

HSP 1 Score: 62.0 bits (149), Expect = 9.480e-11
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2
Query:   17 VTHPCAGRQRVQALLLPLDLHVLSLPLAFILSQDQTLHC 133
            VTHPCAGR  V   +LPLDLHVLSL LAFILSQDQTL C
Sbjct:    1 VTHPCAGRHPVLLPVLPLDLHVLSLSLAFILSQDQTLRC 39          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A0B7HGG2_9FLAO (Uncharacterized protein n=1 Tax=Capnocytophaga canimorsus TaxID=28188 RepID=A0A0B7HGG2_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 4.450e-10
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    7 LYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSLLNF 141
            +YT YAPVRRS     +  TPRLACV+PAASVHPEPGSNSS L  
Sbjct:    1 MYTCYAPVRRSQVPKHS--TPRLACVRPAASVHPEPGSNSSSLKI 43          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A1B2YNL6_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YNL6_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 9.250e-10
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 1
Query:   58 PVTPRLACVKPAASVHPEPGSNSSLLNF 141
            PVTPRLAC++PAASVHPEPGSNSSLLNF
Sbjct:   22 PVTPRLACIRPAASVHPEPGSNSSLLNF 49          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A014AUH4_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Acinetobacter sp. 25977_7 TaxID=1310911 RepID=A0A014AUH4_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 1.810e-9
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 GRLYTRYAPVRRSSASASTP--VTPRLACVKPAASVHPEPGSN 123
            GRL TRY+PVRRS +S ++     PRLACVKP ASVHPEPGSN
Sbjct:   14 GRLDTRYSPVRRSPSSVASNRHAAPRLACVKPVASVHPEPGSN 56          
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Match: A0A502GMN8_9BACT (Uncharacterized protein n=1 Tax=Hymenobacter nivis TaxID=1850093 RepID=A0A502GMN8_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.590e-8
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 GRLYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSLLNF 141
            GRL TRYAPVR    +     T RLAC++PAASVHPEPGSNS L N 
Sbjct:   18 GRLATRYAPVRHYGIA----TTVRLACIRPAASVHPEPGSNSPLYNI 60          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11633.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B2YX85_9BACT4.530e-1682.22Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
UPI001E5F3CDA4.010e-1572.34hypothetical protein n=1 Tax=Parabacteroides sp. 2... [more]
A0A1B2ZB17_9BACT1.860e-1276.19Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A0G0MFX9_9BACT2.290e-1275.00Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A1B2YTP5_9BACT4.120e-1273.81Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
UPI000673CD169.480e-1179.49hypothetical protein n=1 Tax=Parabacteroides sp. 2... [more]
A0A0B7HGG2_9FLAO4.450e-1068.89Uncharacterized protein n=1 Tax=Capnocytophaga can... [more]
A0A1B2YNL6_9BACT9.250e-1092.86Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A014AUH4_9GAMM1.810e-969.77Uncharacterized protein (Fragment) n=1 Tax=Acineto... [more]
A0A502GMN8_9BACT1.590e-863.83Uncharacterized protein n=1 Tax=Hymenobacter nivis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11633contigEcto-sp13_S_contig11633:5021..5164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462612.019972-CDS-Ecto-sp13_S_contig11633:5020..51641681462612.019972-CDS-Ecto-sp13_S_contig11633:5020..5164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11633 5021..5164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11633.1415.1prot_Ecto-sp13_S_contig11633.1415.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11633 5021..5164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11633.1415.1

>prot_Ecto-sp13_S_contig11633.1415.1 ID=prot_Ecto-sp13_S_contig11633.1415.1|Name=mRNA_Ecto-sp13_S_contig11633.1415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
GRLYTRYAPVRRSSASASTPVTPRLACVKPAASVHPEPGSNSSLLNF*
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mRNA from alignment at Ecto-sp13_S_contig11633:5021..5164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11633.1415.1 ID=mRNA_Ecto-sp13_S_contig11633.1415.1|Name=mRNA_Ecto-sp13_S_contig11633.1415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11633:5021..5164+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGATTGTATACGCGTTACGCACCCGTGCGCCGGTCGTCAGCGAGTGC AAGCACTCCTGTTACCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCG TTCATCCTGAGCCAGGATCAAACTCTTCATTGTTAAATTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11633:5021..5164+

>mRNA_Ecto-sp13_S_contig11633.1415.1 ID=mRNA_Ecto-sp13_S_contig11633.1415.1|Name=mRNA_Ecto-sp13_S_contig11633.1415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11633:5021..5164+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGATTGTATACGCGTTACGCACCCGTGCGCCGGTCGTCAGCGAGTGC
AAGCACTCCTGTTACCCCTCGACTTGCATGTGTTAAGCCTGCCGCTAGCG
TTCATCCTGAGCCAGGATCAAACTCTTCATTGTTAAATTTTTAG
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