mRNA_Ecto-sp13_S_contig11630.1412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11630.1412.1
Unique NamemRNA_Ecto-sp13_S_contig11630.1412.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11630.1412.1 vs. uniprot
Match: D8LH31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH31_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.660e-25
Identity = 88/107 (82.24%), Postives = 89/107 (83.18%), Query Frame = 2 
Query:    2 SRQWPHFRLRLHLHWARPRRNLPLNLRRHLA*AQKRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKSAASINAHRCYFAACLDKEGASMVGVVVGAVAGALALGAL 322
            SRQ PHFRL  +LHWARPRRNLPLNLRRHLA AQKR      XXXXXXXXXXXXXXXXXXXXXXX    ASINAH CY A  LDKEGASMVGVVVGAVAGALALGAL
Sbjct:    2 SRQRPHFRL--YLHWARPRRNLPLNLRRHLARAQKRPHLRPRXXXXXXXXXXXXXXXXXXXXXXXXXXPASINAHHCYSAVRLDKEGASMVGVVVGAVAGALALGAL 106
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BLAST of mRNA_Ecto-sp13_S_contig11630.1412.1 vs. uniprot
Match: A0A6H5KIG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.460e-21
Identity = 60/106 (56.60%), Postives = 62/106 (58.49%), Query Frame = 2 
Query:    5 RQWPHFRLRLHLHWARPRRNLPLNLRRHLA*AQKRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKSAASINAHRCYFAACLDKEGASMVGVVVGAVAGALALGAL 322
            +Q PHF LRLHLHW RPRR+LP N R H   AQK                                S ASINAHRCY AA LDKEGASMVGVVVGAVAGALALGAL
Sbjct:    5 KQRPHFGLRLHLHWTRPRRDLPHNPRSHPPLAQK--------------------------------SPASINAHRCYSAARLDKEGASMVGVVVGAVAGALALGAL 78
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BLAST of mRNA_Ecto-sp13_S_contig11630.1412.1 vs. uniprot
Match: A0A6H5JQG3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.100e-8
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 3 
Query:   12 GHTFAYACTYTGHDRAGICPSTYAGTWHEL 101
            GHTFAYACTYTGHDRAGICP+TYA T  EL
Sbjct:   56 GHTFAYACTYTGHDRAGICPTTYAATRLEL 85
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BLAST of mRNA_Ecto-sp13_S_contig11630.1412.1 vs. uniprot
Match: A0A6H5JUI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.250e-8
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  200 KSAASINAHRCYFAACLDKEGASMVGVVVGAVAGALALGAL 322
            +S A +N HRCY AA LDKEGASMVGVVVG  AGALALGAL
Sbjct:  145 RSPAYVNTHRCYSAARLDKEGASMVGVVVGVAAGALALGAL 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11630.1412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LH31_ECTSI2.660e-2582.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIG5_9PHAE3.460e-2156.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG3_9PHAE2.100e-886.67Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JUI5_9PHAE5.250e-878.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11630contigEcto-sp13_S_contig11630:2..2191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size327
Hectar predicted targeting categorysignal peptide
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462611.83484-CDS-Ecto-sp13_S_contig11630:2..1241681462611.83484-CDS-Ecto-sp13_S_contig11630:2..124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11630 3..124 -
1681462611.8447018-CDS-Ecto-sp13_S_contig11630:1346..14421681462611.8447018-CDS-Ecto-sp13_S_contig11630:1346..1442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11630 1347..1442 -
1681462611.879938-CDS-Ecto-sp13_S_contig11630:2085..21911681462611.879938-CDS-Ecto-sp13_S_contig11630:2085..2191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11630 2086..2191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11630.1412.1prot_Ecto-sp13_S_contig11630.1412.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11630 3..2191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11630.1412.1

>prot_Ecto-sp13_S_contig11630.1412.1 ID=prot_Ecto-sp13_S_contig11630.1412.1|Name=mRNA_Ecto-sp13_S_contig11630.1412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
VAAVATLSLTPAPTLGTTAPESAPQPTPAPGMSSEADTLAPAASPALGTA
APGSTPQPSQPPASSSEECRLHQRSSLLFRCLSGQRRSIDGGRCSRRRGR
RAGVRSTR
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mRNA from alignment at Ecto-sp13_S_contig11630:2..2191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11630.1412.1 ID=mRNA_Ecto-sp13_S_contig11630.1412.1|Name=mRNA_Ecto-sp13_S_contig11630.1412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11630:2..2191- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCGGCAGTGGCCACACTTTCGCTTACGCCTGCACCTACACTGGGCAC
GACCGCGCCGGAATCTGCCCCTCAACCTACGCCGGCACCTGGCATGAGCT
CAGAAGGTACGAGACTCGATGCCGCATTTCCCGTTCAACTGGGGCATGCT
GTTTTGTCAACAACAGGCACTAGGCGGTCGAATGTAGACATATCCCGCCG
AACATGCCTAGTTCACTGCCATCCGGAGTGAAATATTTCCGCACCCACGA
CTGGTCGCCCTTGTCAAGGCTACGTTTTTTTGTCCGCCGGGATATCACGG
GGCTAGTAGTCATCGCCACTTGTGAACGAAGGGTCTCAGCTTCCGCTGGT
GTTGTTTACCAAGCCCTGTTGCTTGTGTGCTCCTTAAATTCTTTTTAGGG
TCATGGTACATGTTGTAATGACTCCAAAGGACAGCGTCTGAACCGATGTA
ACGGCAGGAATCCTGTACTAACATATGCGACCGTTTTTTGTCGCAAGACC
CATTCAGTACTTCAAGGCTTCCTCGAGCACGACTTTGTCTTCCGAATGTG
TGATTATTCTGCCAACTGCTTCAATGCGCGCATCCATGTCACCACGGATG
GTCGTCTGTCATGCTTCCCTTGTTGGCTTGGCTTTTCCGCTCGTCCGGCC
AGGGGTATGTAGGGTGAAGCATGAGTGACTGGCGAAGCTCTCGATTGTCC
CAACCCAAATAAATCCTTCAATACCCGCCAACTTGGTATCTCGCGGCAGC
GGACACACTTGCGCCCGCGGCTTCACCTGCACTGGGCACAGCCGCGCCGG
GATCTACCCCACAACCTTCGCAGCCACCCGCCTCGAGCTCAGAAGGCAAG
AGACTTGATGCCGCGTTTCTCGTTTAACTAGGGCATGCTGTAGTGTTTAA
ACAGGCACTAGGCGGTCGAATATTGACATATCCCCGGCTTTGCTCCAAAG
AAGCCCAGTTCACGACCGTCCGGAGTGATGTATTTCCGCACCAAGCACCG
GCCGCCCTTGTCAAGGCTACGGTATTCCATCCGCATTGTCATGGGTCTAG
TAGTCATCACCGCTAGTGAACGAAAGGTCTCAGCTTCCCCTAGTTTAGTT
TCCCAACCTCTGTTGCTTGTGTGCTTCTTACATGCTGCATGGCTCATCGC
CGTGTGTTTTTCTGTCGTTACGTTTTCATATTTGAACAAAAACGCCTTTA
TCTTGTGGTTGATACCGAGTCGATCGATGAAGGAATTCTACCAATCTCCC
CGACAATGTATTGCAGAGGATAAGGGGGATAGTATTCAGTGGTGGCATCT
TGCGCAAAATACCCACGCGAACGCGAAATGGCGTGGCCAATTAGCGACCG
AATACGCCTATTTTATCGTTCGCACCGGGTTAAATTGCTCGGCGCCGCTG
TCGTGTACGGGATTACTCTGCCTCAATTCTTCTTTTCTCACACCATGCCG
CGTCAGGAGAACGGTTGCGTTGTGGAAGAGTATGCATCACAACGCAAACG
ATATTGACTTCGCCGACATGAGCCCGTCTTGAAACCCCCATGGACCGAAG
TATGTCTGGTCTCTCGCTCGCATTTTTTTCTGCCCACTGTTGGCCTTTTT
CTTTGCGGGTCAGTGTTGACTTTCATAAACCAACCCCCGTTGGTTGCCTC
GTCGAACTCCCCTGCGGTATACTCGTCCGTAGGATTAAACGTGCGCTTGT
TCAATGTGTCTTGTGTCTACCTGAATACCTCCGCTCAGCTTGCGGCTTAC
CTCAAGGCAGGGTTAACCCGTGGCCGCAGGGGTTTCTGGCCAATATTTGA
GAGCGAGAGGGGGTCGACCTTCACTGTACATACTGGTTGTCCTCATGCTC
AGAATTCCTCCAAGTTTGCCGATAAAAGGACCCTGCCCCGTTTCCATCAA
CCCCTTTCAAAGTGCTACGAATTGAGAAAATGGGCAGGTGCACACACCCA
CATGTTGTACGTGCAGTCTTGCGTGATGCGATGGAAGGATCGCAAAGACT
GGCCCTGAAATTCTTTGGTTGATCAGTCGAAATGTCGTTTTCCTGCTGCC
AATCGTTTGTCTACCAGAGTGCCGCCTCCATCAACGCTCATCGCTGCTAT
TTCGCTGCTTGTCTGGACAAAGAAGGAGCATCGATGGTGGGCGTTGTAGT
CGGCGCCGTGGCCGGCGCGCTGGCGTTAGGAGCACTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11630:2..2191-

>mRNA_Ecto-sp13_S_contig11630.1412.1 ID=mRNA_Ecto-sp13_S_contig11630.1412.1|Name=mRNA_Ecto-sp13_S_contig11630.1412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11630:2..2191- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCGGCAGTGGCCACACTTTCGCTTACGCCTGCACCTACACTGGGCAC
GACCGCGCCGGAATCTGCCCCTCAACCTACGCCGGCACCTGGCATGAGCT
CAGAAGCGGACACACTTGCGCCCGCGGCTTCACCTGCACTGGGCACAGCC
GCGCCGGGATCTACCCCACAACCTTCGCAGCCACCCGCCTCGAGCTCAGA
AGAGTGCCGCCTCCATCAACGCTCATCGCTGCTATTTCGCTGCTTGTCTG
GACAAAGAAGGAGCATCGATGGTGGGCGTTGTAGTCGGCGCCGTGGCCGG
CGCGCTGGCGTTAGGAGCACTCGG
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