mRNA_Ecto-sp13_S_contig11625.1405.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11625.1405.1
Unique NamemRNA_Ecto-sp13_S_contig11625.1405.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI)

HSP 1 Score: 773 bits (1996), Expect = 1.410e-275
Identity = 392/413 (94.92%), Postives = 398/413 (96.37%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRHARGLVGAEEVGREKGHVPPPRLKDNGVQRQGERDAFGARTERFSKLTNDVPPPGAYYRRSTLERDGNVCGSVSAKGYGTGFVSNAPRFKNLNTLQQAYLPGPGSYTIPAAGVQEGTKLTSFSSLKRDHLGIVPGPGEYNTDRGNRNNTANKNRAGASNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGNILKDPFFR 1239
            F+  +   +SGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQT+DLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDA+IEAYLRHARGLVGAEEVGREKGHVPPPRLKDNGVQRQGERDAFGARTERFSKLTNDVPPPGAYYRRSTLERDG VCGSVSAKGYGTGFVSNAPRFK+LNTLQQAYLPGPGSYT  A  VQEGTKLTSFSSLKRD LGIVPGPGEYN DRGNRNNT NKNRAGA NPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGN LKDPFFR
Sbjct:  249 FKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTRDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDALIEAYLRHARGLVGAEEVGREKGHVPPPRLKDNGVQRQGERDAFGARTERFSKLTNDVPPPGAYYRRSTLERDGKVCGSVSAKGYGTGFVSNAPRFKDLNTLQQAYLPGPGSYT--AEDVQEGTKLTSFSSLKRD-LGIVPGPGEYNIDRGNRNNTTNKNRAGAPNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGNALKDPFFR 658
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A6H5LLH5_9PHAE (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLH5_9PHAE)

HSP 1 Score: 408 bits (1049), Expect = 1.530e-136
Identity = 208/217 (95.85%), Postives = 212/217 (97.70%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRHARGLVGAEEVG 651
            F+  +   +SGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDA+IEAYLRHARGLVGAEEVG
Sbjct:  247 FKYKIVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDALIEAYLRHARGLVGAEEVG 463
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A6H5L4U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U5_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 1.110e-124
Identity = 192/243 (79.01%), Postives = 196/243 (80.66%), Query Frame = 1 
Query:  631 VGAEEVGREKGHVPPPRLKDNGVQRQGERDAFGARTERFSKLT-----------------NDVPPPGAYYRRSTLERDGNVCGSVSAKGYGTGFVSNAPRFKNLNTLQQAYLPGPGSYTIPAAGVQEGTKLTSFSSLKR-----------------------DHLGIVPGPGEYNTDRGNRNNTANKNRAGASNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGNILKDPFFR 1239
            V   +VGREKGHVPPPRLK NGVQRQGERDAFGARTERFSKLT                 NDVPPPGAYYRRSTLERDGNVCGSVSAKGYGTGF+SNAPRFK+LNTLQQAYLPGPGSYTIPA GVQEGTKLTSFSSLKR                       DHLGIVPGPGEYNTDRGNRNNTANKNRAGA NPTSSFLCARTPLNVGTHLETPAPGTYELLPTQ SHVDKSGN+LKDPFFR
Sbjct:    5 VSYRQVGREKGHVPPPRLKGNGVQRQGERDAFGARTERFSKLTVIHSALAHRLTPHYLPQNDVPPPGAYYRRSTLERDGNVCGSVSAKGYGTGFLSNAPRFKDLNTLQQAYLPGPGSYTIPAEGVQEGTKLTSFSSLKRVRLARHAYLSSHPYNTQDCGFAQDHLGIVPGPGEYNTDRGNRNNTANKNRAGAPNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQHSHVDKSGNVLKDPFFR 247
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A835Z7S5_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S5_9STRA)

HSP 1 Score: 318 bits (815), Expect = 8.000e-103
Identity = 154/197 (78.17%), Postives = 177/197 (89.85%), Query Frame = 1 
Query:   25 QSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLR 615
            + GEVAGIKSC + VEG   YG LAGEKGTHRLVRQSPFNAQAKRQTSFAGVE+FP++E +DL D+ +P+G+LE++TMRSGG GGQNVNKVETGVRM+HIPTGIAVRCTQERSQ++NK LAL M+KE+L+VVMQEQQ  ++A+IRGDMVEASWGQQIRNYV HPYK+VKDTRT AET QVQDVMDGDLD  IE+YLR
Sbjct:  151 EPGEVAGIKSCRIDVEGPLCYGLLAGEKGTHRLVRQSPFNAQAKRQTSFAGVETFPVLELEDLDDVHIPDGDLEITTMRSGGKGGQNVNKVETGVRMRHIPTGIAVRCTQERSQLMNKALALKMIKERLLVVMQEQQAAEVAQIRGDMVEASWGQQIRNYVMHPYKMVKDTRTAAETAQVQDVMDGDLDLFIESYLR 347
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A7S3UT02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT02_HETAK)

HSP 1 Score: 292 bits (747), Expect = 3.010e-93
Identity = 145/205 (70.73%), Postives = 168/205 (81.95%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLR 615
            F++       GEVAGIKS  +++EG +A+G L GEKGTHRLVR SPFNA  KRQTSFA VE+ PI+E DDL D  +P+ ELE++TMRSGG GGQNVNKVET VR++H+PTG+AVRC+QERSQ  NK+LAL MLKEKL+VVM+EQQ KDLAEIRGD VEASWGQQIRNYVFHPYK+VKD RTGAET QVQ VMDGDL     AYL+
Sbjct:  102 FQVRTIEEMPGEVAGIKSAILEIEGPYAFGNLIGEKGTHRLVRLSPFNANNKRQTSFASVETIPIVEMDDLRDFEIPDAELEITTMRSGGKGGQNVNKVETAVRIRHLPTGLAVRCSQERSQGRNKDLALKMLKEKLLVVMEEQQAKDLAEIRGDAVEASWGQQIRNYVFHPYKVVKDLRTGAETSQVQSVMDGDLSLFANAYLK 306
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A7S2UWG0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG0_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.860e-90
Identity = 137/205 (66.83%), Postives = 171/205 (83.41%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLR 615
            +++ +     GE AGIKS E+++ G FAYG LAGEKGTHRLVR SPFN+  KRQTSFAGVE+ PI+EQDDL    +PE +LEV+TMR+GG GGQNVNKVET VRMKH+PTG++V+CTQER+Q +N+ LAL  LKEK++V+M+EQQ K+LA+IRGDMVEA+WGQQIRNY+FHPYK+VKD RT  +T QVQDVMDGDLD  + ++LR
Sbjct:  246 YQVTLIDEMEGEEAGIKSAELEITGPFAYGRLAGEKGTHRLVRLSPFNSSNKRQTSFAGVETIPIVEQDDLGKFEIPEADLEVTTMRAGGKGGQNVNKVETAVRMKHLPTGLSVKCTQERTQTMNRALALKALKEKILVIMEEQQAKELAQIRGDMVEATWGQQIRNYIFHPYKMVKDVRTEVDTSQVQDVMDGDLDIFVNSFLR 450
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A140ECJ6_9STRA (Plastid peptide chain release factor 2 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140ECJ6_9STRA)

HSP 1 Score: 278 bits (710), Expect = 5.170e-88
Identity = 135/217 (62.21%), Postives = 174/217 (80.18%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRHARGLVGAEEVG 651
            F + V+    G+V GIKS  +++EG+ A+G L+GEKGTHRLVR SPFNA  KRQTSFAGVE+ PI+ +D+L  + +P+ ELE +T RSGG+GGQNVNKVET VR++HIPTGI  RCT+ERSQ++NK+ AL+MLKEKL+++  EQ+ ++L EIRGD+VEASWGQQIRNYVFHPYKLVKDTRTG ET  +Q+V+DG++D  I+AYLR  R  V  +  G
Sbjct:   67 FSVRVTDTSPGDVCGIKSAMLEIEGENAFGILSGEKGTHRLVRISPFNAGGKRQTSFAGVETMPILPEDELDQVDIPDSELEYTTSRSGGAGGQNVNKVETAVRVRHIPTGIVARCTEERSQLMNKKKALDMLKEKLMMIKAEQRVEELDEIRGDLVEASWGQQIRNYVFHPYKLVKDTRTGYETSSLQEVLDGEIDDFIKAYLRGGRKDVSDDSTG 283
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A0G4ETN2_VITBC (RF_PROK_I domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETN2_VITBC)

HSP 1 Score: 281 bits (718), Expect = 7.030e-87
Identity = 135/206 (65.53%), Postives = 169/206 (82.04%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRH 618
            +R  V     GE AGIKS E+++EG++AYG L+GEKGTHRLVR SPFNAQ KRQTSFAGVE+ PI+  +D+ D+ + + +LEV+TMRSGG GGQNVNKVET VR+ HIPT I V+CTQERSQ+ NKE+AL MLKE+L+V+ +EQ+ ++LAEIRGDMV+A WG QIRNYV HPYK+VKDTRTG ET   +DV+DGD++A  E+YLRH
Sbjct:  243 WRARVVDRSDGEEAGIKSAEVEIEGEYAYGLLSGEKGTHRLVRISPFNAQGKRQTSFAGVETMPILPDEDVRDITIDDRDLEVTTMRSGGKGGQNVNKVETAVRILHIPTNIMVKCTQERSQLKNKEIALKMLKERLLVIKEEQRVQELAEIRGDMVQAEWGNQIRNYVLHPYKVVKDTRTGTETSAARDVLDGDIEAFCESYLRH 448
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: I0YY36_COCSC (Peptide chain release factor 2 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YY36_COCSC)

HSP 1 Score: 275 bits (703), Expect = 6.500e-86
Identity = 139/206 (67.48%), Postives = 167/206 (81.07%), Query Frame = 1 
Query:   25 QSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRHARGLVGAE 642
            QSGE AG+KS EM+V G +AYGYLAGEKGTHRLVRQSPFNA+A RQTSFA VE  PI+  +  + + +PE +LE++T RS G+GGQNVNK+ET VR+KHIPTGIAVRC Q+RSQ+ NK LA+  LK KLVVV QEQQ +++AEIRGD+V+A WGQQIRNYVFHPYKLVKD RTG ET  V  VMDGD+D  ++AYLRH +G +  E
Sbjct:  165 QSGEEAGVKSVEMEVHGRYAYGYLAGEKGTHRLVRQSPFNAKAARQTSFAAVEVMPIL-GEKATQVEIPESDLEITTTRSQGAGGQNVNKLETCVRIKHIPTGIAVRCQQQRSQLQNKALAMEQLKAKLVVVQQEQQAREIAEIRGDIVKAEWGQQIRNYVFHPYKLVKDVRTGMETSDVPGVMDGDIDQFVQAYLRH-KGRLSTE 368
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BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Match: A0A140K1B1_9CYAN (Peptide chain release factor 2 n=3 Tax=Stanieria TaxID=102115 RepID=A0A140K1B1_9CYAN)

HSP 1 Score: 273 bits (697), Expect = 4.040e-85
Identity = 137/211 (64.93%), Postives = 168/211 (79.62%), Query Frame = 1 
Query:    1 FRIPVSMAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDMVEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRHARGLV 633
            ++I ++    G+ AGIKS  +++EG +AYGYL  EKGTHRLVR SPFNA  KRQTSFAG+E  P +++  ++ L +PE +L++ST RSGG GGQNVNKVET VR+ HIPTGIAVRCTQERSQ+ NKE AL +LK KL+V+ QEQ+ K++AEIRGDMVEA+WG QIRNYVFHPY+LVKD RT  ETV V DVMDG+LD +IEAYLR    LV
Sbjct:  151 YQIHLAELSPGDEAGIKSATLEIEGRYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPALDESAIN-LEIPEKDLDISTSRSGGKGGQNVNKVETAVRVVHIPTGIAVRCTQERSQLQNKEKALALLKAKLLVIAQEQRAKEIAEIRGDMVEAAWGNQIRNYVFHPYQLVKDLRTEVETVDVNDVMDGNLDFLIEAYLRQENQLV 360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11625.1405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJS9_ECTSI1.410e-27594.92Peptide chain release factor n=1 Tax=Ectocarpus si... [more]
A0A6H5LLH5_9PHAE1.530e-13695.85RF_PROK_I domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4U5_9PHAE1.110e-12479.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7S5_9STRA8.000e-10378.17RF_PROK_I domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3UT02_HETAK3.010e-9370.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWG0_9STRA1.860e-9066.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A140ECJ6_9STRA5.170e-8862.21Plastid peptide chain release factor 2 n=1 Tax=Tra... [more]
A0A0G4ETN2_VITBC7.030e-8765.53RF_PROK_I domain-containing protein n=1 Tax=Vitrel... [more]
I0YY36_COCSC6.500e-8667.48Peptide chain release factor 2 n=1 Tax=Coccomyxa s... [more]
A0A140K1B1_9CYAN4.040e-8564.93Peptide chain release factor 2 n=3 Tax=Stanieria T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11625contigEcto-sp13_S_contig11625:2..4982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score774.2
Seed ortholog evalue2.9e-221
Seed eggNOG ortholog2880.D7FJS9
Model size1239
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930,ko:K02836
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003730,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006412,GO:0006415,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0016043,GO:0016070,GO:0016149,GO:0019219,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031329,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043565,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311
Exons6
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
EC6.3.2.17
Cds size1221
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11625.1405.1prot_Ecto-sp13_S_contig11625.1405.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11625 2..4964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462611.3971756-CDS-Ecto-sp13_S_contig11625:1..2441681462611.3971756-CDS-Ecto-sp13_S_contig11625:1..244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11625 2..244 -
1681462611.4142175-CDS-Ecto-sp13_S_contig11625:734..9711681462611.4142175-CDS-Ecto-sp13_S_contig11625:734..971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11625 735..971 -
1681462611.4330356-CDS-Ecto-sp13_S_contig11625:1518..16321681462611.4330356-CDS-Ecto-sp13_S_contig11625:1518..1632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11625 1519..1632 -
1681462611.4446845-CDS-Ecto-sp13_S_contig11625:3089..32761681462611.4446845-CDS-Ecto-sp13_S_contig11625:3089..3276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11625 3090..3276 -
1681462611.456917-CDS-Ecto-sp13_S_contig11625:4018..42611681462611.456917-CDS-Ecto-sp13_S_contig11625:4018..4261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11625 4019..4261 -
1681462611.4688382-CDS-Ecto-sp13_S_contig11625:4767..49641681462611.4688382-CDS-Ecto-sp13_S_contig11625:4767..4964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11625 4768..4964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462611.4812455-UTR-Ecto-sp13_S_contig11625:4964..49821681462611.4812455-UTR-Ecto-sp13_S_contig11625:4964..4982Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11625 4965..4982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11625.1405.1

>prot_Ecto-sp13_S_contig11625.1405.1 ID=prot_Ecto-sp13_S_contig11625.1405.1|Name=mRNA_Ecto-sp13_S_contig11625.1405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MAQSGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTS
FAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMK
HIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDM
VEASWGQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDAMIEAYLRH
ARGLVGAEEVGREKGHVPPPRLKDNGVQRQGERDAFGARTERFSKLTNDV
PPPGAYYRRSTLERDGNVCGSVSAKGYGTGFVSNAPRFKNLNTLQQAYLP
GPGSYTIPAAGVQEGTKLTSFSSLKRDHLGIVPGPGEYNTDRGNRNNTAN
KNRAGASNPTSSFLCARTPLNVGTHLETPAPGTYELLPTQQSHVDKSGNI
LKDPFFR
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mRNA from alignment at Ecto-sp13_S_contig11625:2..4982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11625.1405.1 ID=mRNA_Ecto-sp13_S_contig11625.1405.1|Name=mRNA_Ecto-sp13_S_contig11625.1405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11625:2..4982- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCGTATCCCTGTCTCCATGGCGCAGTCGGGGGAAGTAGCGGGCATCAA
GAGCTGCGAGATGCAGGTGGAGGGAGACTTCGCGTACGGTTACCTGGCCG
GGGAGAAGGGGACCCACAGACTGGTCCGGCAGTCCCCTTTCAACGCACAG
GCAAAGCGACAGACCAGCTTCGCGGGAGTGGAGTCGTTTCCGATCATCGA
GCAAGACGACTTATCGTGAGTCGTCCTCCGACCCAATTGTACGAAGTTTA
AGTTTTTGGGTGCATTGTGTTACGAGGACCCTGTGTTTTGTCGGTTTGGT
TAATATTTTCCTCTGCGCCGAACAAACGCTTGTCACCTCTCTTAGAATGG
TCTGGTACAAACGGTCAAACCGCCTCCTGCTTCTGTGGCATTTGTGTGCT
AGGATATGGTCTGGCTTAACACCAGCACTGCTGTATGTCATCCTCAGCAG
ATCAACGCGTCTCTAAATTGTACTCTTTCGAGTATTTACTTGTTTCCCAT
CCACATCGTCTCGATATCCACCCACAGCCCACTCACCCCACAACAAAACG
AAACCTGCGCTTTTGCCTTTGTCCCTCGATATTCTTTTTGCGCCCCCTAC
GCCCCACCCTCCTTTTCCGTTCACGTGTCAGTGTGTACCCCCCCCCCAAA
AATTGACGTCCTGCTCGCACCCCTCCCCCCCCTTCTCCAATTTTCCGTTG
TGCGGTGATGCGTGCCATCAGTGATCTAGTCGTTCCAGAGGGAGAGCTAG
AGGTCAGCACCATGCGATCAGGGGGGTCGGGGGGGCAGAACGTGAACAAG
GTGGAGACCGGGGTGAGGATGAAGCACATCCCCACGGGGATCGCGGTCAG
GTGCACGCAGGAGAGGTCGCAGATGCTCAACAAGGAGCTGGCGCTGAACA
TGCTCAAGGAGAAGCTGGTGGTGGTGATGCAAGAGCAGCAGACCAAGGAT
CTCGCCGAGATCAGGTGTGGGGTTGGGAAGAGTTGGGGGTGGACTGAGGG
CGAGCTAACAGCGCACATCGGCTTTATGTCTTGGTCTTGTGTAGGAGGGA
AAACCCTTTGGAGGCGTCCTCTCATCCGTTGGCCTCCTTTCATCCGTTGG
CCAATGCGCTTGTTGTGTTTGATCTCATTGGTGCAAAGGAACAGCCAGTG
GCACACCTCTAAGGCTACCCAACGATTTGTCATATTTTATTGCTTACTTC
GTGGGGATTCCTCCTCTCAGCCAGTAGATCCTTCGCCGTGTCTTGGCCTC
CTCATTGAAGCATAAAGCTGCGGCTCAGAAGCTGATCTCACAGGGTATGT
CATCTCTCTCAGGTCCCGTAATTCTTGCGGAAGGCATCCAACTGCTGTCG
TTTCCTTTACGTTGGAAGCTTCAAGGTCTTCGCAGCTCCTTCCCTCCACG
TGTTTTCTCGGCCACCGAAGTTACTGCGTTTGTTTCTTGACTGCTATCAG
TCGTAATGGAAAAATTACTGTATTGATAATGGAGAGAGGCGGGGCGGGGG
GGGAGGGGGGGGGGGGGGGGGACGCTCTAGGTACTACTGTCCCTGTGATT
GGACGGCCGGCGGTAACACTGCCTTCTTGTCAACCCCGTTTAGCTTCACC
GGTTCCGTCGCACGCTCCTCTTCCTGCCCTGTCTGAACCCACCGGTCATC
GACATCGTTCCTTGCCCCCCCCTTTAACCGATAACGTTTCGCCTTTCGTT
CTCAAGAGGGGACATGGTGGAGGCGAGCTGGGGGCAACAGATCCGCAACT
ACGTCTTCCACCCCTACAAGCTTGTCAAGGACACGCGCACGGGAGCGGAG
ACCGTGCAAGTTCAGGACGTCATGGACGGGGATCTGGACGCCATGATCGA
GGCGTACCTTCGGCACGCCAGGGGGCTCGTGGGCGCCGAAGAAGTGGGTG
GTGAGGGAGCAGCAGCGGCAGCAGAATCTTCAGCGGCGTCAGCGTCCTGA
TGAAGTCAAGGGCGGGTCCTGACTCGGAAATTCGTAGACGGGCGTTGAAT
GCTGGAGTACCGAGACTTGATGGATCAAACGTGTTGTTTGTCTTGTTCGA
CAGAATGATCGATGTCTTTTTTTTGTTTTGTTTCTTCGGGAGGCTAACGG
GGAAAGCACCGGCGACCTCACACAACACCCGTCTTTGCTGCAGTGTAGCG
CGCACAGAAAGCGTTTTCGTAAATCGACAGCGTGCATACACCATCATCGC
ACGGTTATTAACGCTGACGAGAGGAGATCAAGGCGCGTGACCCGTTGGGG
TCGACGATTTGTCGTACCGGGCCTTTCTCCACGGCTATCCCTTATGGCAT
TTGAATATACTACCACCGCTGATGCTAAGAGGATCGAATCTCGGTTCTCC
TGTTAGTCAAGCATGCAGGCTAAAAAAGTGGTCTGTTGAAAGGGAGCGCA
CGACAGCGTCCACGGTATGTCGTGACCAACGCACAATGTACCAATGTCTG
GAAGGGTTATGTGCCTACAGTTCCTTGATAAGGTGTCTGCTTAGTAAACC
TGTGCGTGCGGCATCATGCAAACCATTTTCCGATCGAAGAACACCGCAAA
CTATTAGTCTACACGCACACGAATAGTGCACTCTCGATAGTAGGGGTGAG
CGGCATTGAGCTGGAGTCGAAAGCAAAATTCTTGGAACTACTATTTGTAT
GTGTCCTTGTTTTCTTCCTTTTTTTCTTTTGACAGGGTCACTCGTCACAC
AGACAGCTCTGTTCTGTGGTCTACACCCAAAAAGTTCCAGTGTTTTACGA
TGAGCTCCAATCCGGGGCCACAAGGGCAGAAAGATCGTTTATTATTGCGT
TGTGGCTAATTTGTTGCACAAGAAATGTGCCCAGCAATTTTGCGCTTGTT
TTGTGTTTTTGATCACGGGGTTAATCTGTGGGGCGGGAAAGACACTTGTC
TCTGTAGTCCACACGCAGCACTGTACACACTCCGAACTCACTTTTTTTTT
CAAGACAAATTCGTCTCGTGTGTTTTCTTCTAAGCATTGCCAATGGAATG
CTTCAGTTCCTTGCAATTGTTTCCACAGCAGCAGTAGTGGTAGTATTTCA
TGTCCATGTTTCCTTCCGAACACATGCGTTCTGTTTTCCTCCTTACGAGA
ACTGCTTAGCCTGCTGCCCTAGCTTCCACGCTAACGCGAGACGCTACCCC
ACAACCTACACGCGCTTGGCCCTGAATTTCTGCCCAGACGAGTCCCGAAA
AAGACAAAGAGGCGTTTCCTACCGTTACCTTCTTCAAAACAATCTCTCCG
CCGACGAAACTTTGATTGTCGTCAGGTCATCGGCACCCGTCTGCCGCAGT
GTCAATATCACTGGTTGCGTAACATGGCCAATGAGGTTTCATACCGTCAG
GTCGGCCGAGAAAAGGGCCACGTGCCGCCCCCGAGACTCAAGGATAACGG
GGTGCAGCGACAAGGCGAGCGGGATGCCTTTGGAGCAAGAACTGAGCGAT
TTTCAAAGCTCACGGTGGGTTGTTGCTGTGTGTTGGGCCTACTTCGCCGC
GTTGTTTTGATAGAAGGCTTTGATTCCTTCCCTCTTGGCCGTCGGCCATT
GCACGCTGAGATATTGCAACTACTTACCCCTACAACGAGCGGTGTGCGAA
GGTAGCACACGATGCGTTCCTTTTTTCAAATCATATCTATCTTCACTTTT
CAGGTGAGACTACAGCAGCAGCAGCAGTAGTGTACCACAGCATCTTGTGA
CCGTTGTTTGCTGGATAGGATGTTCGCGTAGTAGAGTACTGCTGTACTGC
GTACTCATAACGTATTGCCTAAGAATACTTACCTAGCCGTGAAACATCTT
GAATTCCCTTTTAATTAATCAGAGCTTCCTTAGCTGGTACGTGGCGAAAT
ATGTAGGGTACACAAGTGGTCAACCGAAGTACACGCATATCTCGCTCAAT
GTACACGAAGAGATTGATCACTGGTACCCAGCCTTCTTTCGACCTTCAAG
ACGAAACCAGGTTTTTCACTCAGCTCTGGCACACCGCCTCACTCCCCACT
TTCTATCACAGAACGACGTGCCTCCGCCTGGAGCGTACTACCGGCGGTCA
ACCCTTGAAAGGGACGGGAACGTCTGTGGCTCGGTCTCCGCCAAGGGTTA
CGGGACTGGTTTCGTTTCCAATGCACCGCGCTTCAAAAACCTGAACACGC
TTCAGCAGGCCTACCTTCCCGGCCCTGGATCGTACACGATTCCGGCGGCG
GGTGTGCAGGAAGGAACCAAACTGACGTCATTTTCGAGCTTGAAAAGGGT
GAGGTACTTCGAAGAAAGAAGCATTCAGAGGTTGTCTCTTGGTGTAGCTG
TGCATGTAGACTACATATATGAAGTGTCTGGGAGTCTAAAGAGATGGAGC
TCAGACTGTGGTACAATGTCGGTGTGAGAGCAACAACACAAGACGGTCAG
GTTTGAACGGACGCTAGACGCGGAAAGTATTCTCTATGAGTCTAGCGTAC
GAGAACGCAAGTCAAGAACCCCAGCGCCATCGTGGCCTTGCCCTTCGCTC
TGCTCGCTATTTTTGAAAAAAACCTTGGTTGTTTTCTCACGGAACGTTTC
TCACACAAAATGAAGACATTTTCTCGCTCGACCAACCGCTGCGGCTTGAG
TATTACATACCTGTAGACGGCAGAAATCCTTCCGCACTGACCCCAAGTGA
CGCAGATGCCTCCCGTGGTCACAGGCTAACCAGGCATGCTTACCTTTCGT
CACACCCATACAATACACAGGATTGCGGGTTCGCGCAGGATCATCTTGGA
ATCGTCCCTGGACCAGGCGAGTACAACACCGACCGCGGCAACAGAAACAA
CACCGCCAACAAGAATCGAGCTGGCGCATCGAATCCAACGTCCTCGTTCC
TCTGCGCAAGAACGCCCCTAAACGTCGGCACCCATCTGGAGACACCGGCG
CCGGGCACCTACGAGCTGCTCCCCACGCAGCAATCACATGTCGACAAGAG
CGGGAACATCCTCAAAGACCCGTTCTTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11625:2..4982-

>mRNA_Ecto-sp13_S_contig11625.1405.1 ID=mRNA_Ecto-sp13_S_contig11625.1405.1|Name=mRNA_Ecto-sp13_S_contig11625.1405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11625:2..4982- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCAGTCGGGGGAAGTAGCGGGCATCAAGAGCTGCGAGATGCAGGT
GGAGGGAGACTTCGCGTACGGTTACCTGGCCGGGGAGAAGGGGACCCACA
GACTGGTCCGGCAGTCCCCTTTCAACGCACAGGCAAAGCGACAGACCAGC
TTCGCGGGAGTGGAGTCGTTTCCGATCATCGAGCAAGACGACTTATCTGA
TCTAGTCGTTCCAGAGGGAGAGCTAGAGGTCAGCACCATGCGATCAGGGG
GGTCGGGGGGGCAGAACGTGAACAAGGTGGAGACCGGGGTGAGGATGAAG
CACATCCCCACGGGGATCGCGGTCAGGTGCACGCAGGAGAGGTCGCAGAT
GCTCAACAAGGAGCTGGCGCTGAACATGCTCAAGGAGAAGCTGGTGGTGG
TGATGCAAGAGCAGCAGACCAAGGATCTCGCCGAGATCAGAGGGGACATG
GTGGAGGCGAGCTGGGGGCAACAGATCCGCAACTACGTCTTCCACCCCTA
CAAGCTTGTCAAGGACACGCGCACGGGAGCGGAGACCGTGCAAGTTCAGG
ACGTCATGGACGGGGATCTGGACGCCATGATCGAGGCGTACCTTCGGCAC
GCCAGGGGGCTCGTGGGCGCCGAAGAAGTCGGCCGAGAAAAGGGCCACGT
GCCGCCCCCGAGACTCAAGGATAACGGGGTGCAGCGACAAGGCGAGCGGG
ATGCCTTTGGAGCAAGAACTGAGCGATTTTCAAAGCTCACGAACGACGTG
CCTCCGCCTGGAGCGTACTACCGGCGGTCAACCCTTGAAAGGGACGGGAA
CGTCTGTGGCTCGGTCTCCGCCAAGGGTTACGGGACTGGTTTCGTTTCCA
ATGCACCGCGCTTCAAAAACCTGAACACGCTTCAGCAGGCCTACCTTCCC
GGCCCTGGATCGTACACGATTCCGGCGGCGGGTGTGCAGGAAGGAACCAA
ACTGACGTCATTTTCGAGCTTGAAAAGGGATCATCTTGGAATCGTCCCTG
GACCAGGCGAGTACAACACCGACCGCGGCAACAGAAACAACACCGCCAAC
AAGAATCGAGCTGGCGCATCGAATCCAACGTCCTCGTTCCTCTGCGCAAG
AACGCCCCTAAACGTCGGCACCCATCTGGAGACACCGGCGCCGGGCACCT
ACGAGCTGCTCCCCACGCAGCAATCACATGTCGACAAGAGCGGGAACATC
CTCAAAGACCCGTTCTTCAGG
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