mRNA_Ecto-sp13_S_contig11609.1393.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11609.1393.1
Unique NamemRNA_Ecto-sp13_S_contig11609.1393.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11609.1393.1 vs. uniprot
Match: D8LI17_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.920e-5
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 3 
Query:   15 MSIVLPELPWAKDALAPHISAEAAE 89
            MSIVLPELPWAKDALAPHISAE  E
Sbjct:    1 MSIVLPELPWAKDALAPHISAETIE 25
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11609.1393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI17_ECTSI4.920e-592.00Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11609contigEcto-sp13_S_contig11609:3035..4169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462610.5422506-CDS-Ecto-sp13_S_contig11609:3034..31141681462610.5422506-CDS-Ecto-sp13_S_contig11609:3034..3114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11609 3035..3114 +
1681462610.5608904-CDS-Ecto-sp13_S_contig11609:3926..40531681462610.5608904-CDS-Ecto-sp13_S_contig11609:3926..4053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11609 3927..4053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462610.5748422-UTR-Ecto-sp13_S_contig11609:4053..41691681462610.5748422-UTR-Ecto-sp13_S_contig11609:4053..4169Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11609 4054..4169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11609.1393.1prot_Ecto-sp13_S_contig11609.1393.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11609 3035..4053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11609.1393.1

>prot_Ecto-sp13_S_contig11609.1393.1 ID=prot_Ecto-sp13_S_contig11609.1393.1|Name=mRNA_Ecto-sp13_S_contig11609.1393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
AANSSCRSYCRNCRGRRTPSLPTSVPRLRKTAAILRPATNSLLQRAQMAT
IVAHAALPKRQADLREFV*
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mRNA from alignment at Ecto-sp13_S_contig11609:3035..4169+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11609.1393.1 ID=mRNA_Ecto-sp13_S_contig11609.1393.1|Name=mRNA_Ecto-sp13_S_contig11609.1393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11609:3035..4169+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAAATTCATCATGTCGATCGTACTGCCGGAATTGCCGTGGGCGAAG
GACGCCCTCGCTCCCCACATCAGTGCCGAGGTAAGCTAGCTTCACATTGG
TGGCACCGCCACAGAGGTGGCCTTATTCGCTATTGTTGTGCCGAAAGAAC
TTCCAAGCAAGAAGAAAATAGAGCCATCTGTCTTGATGTTCTCGGAGCCC
GCGCAGCACCATGCGCAGAGAAAGAACTGCCGTCTACAGCATAGTCGAGT
ATGCACTAATCTGAATCTGCTTTTGAGCACGTGAGAATCTATAACATGCA
CGCGATCATGCCACAAGTAGATTCACCCGCCGCCAATGGCAGTACTTGCC
GCCCTGATCGCAACTGTTATAGGGCATTTTTGCTCTGCAGTGTTGGAGCG
AGATGGCACGACCCTGGCTTGTTTGTTCTGTAACACCCATTTGACCACAT
ATGAACGGGCAGGCAGTTGGTGTTTTTGGGCGAACACCCCGCAGATACAG
CAGCGGGAGGTTCTTGTACTTTTGTCCCGCGCGTTAGAAAACACATGCGC
CTAAAATCACAGAAAGACTACATTTACCCGTTCGAGGTATACCCACAGCA
GTCGAAAGGGATGTGCTGAAGTCTTTTCAGTGAGTGGGAGGGAAACCGGC
TGTAAACTGGTCTTATTTTGAGCATGAGGGCCTGCAGTAGGCCGCTTGCA
TTAGGCCGCCTGCCCGCTTGAAGGCTGGTGAAATTGCTTGGCACAGACTT
TGCCCTCTTATGAGGCCGGTAATGGCCCCCCAGCCTGCCCCCAACTAAGG
CCGGTATCCGTAGAAGCGACGCTGGTTTCGCCGCATGCATCCTTTCTCTG
CTGCGCGCCACGGTCTCGGCGCACTTGGTCGCTCTGGAGAAGGCTGCGGA
AGACAGCGGCAATCCTGAGGCCGGCCACAAATAGCCTTCTGCAGAGGGCT
CAGATGGCGACGATAGTCGCGCATGCCGCACTGCCCAAGCGGCAGGCGGA
CTTGAGGGAATTTGTGTAGATGTGATGAGAGCGCATGGGAGGGATCTTCG
TAGCGTTTGCTGTGTTTTTGGTGGTCTTGGTGTTTTTTCAGCAGGTTTTG
TCAGGAATTGGTGCTGTGTGCCCTTTACATTATAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11609:3035..4169+

>mRNA_Ecto-sp13_S_contig11609.1393.1 ID=mRNA_Ecto-sp13_S_contig11609.1393.1|Name=mRNA_Ecto-sp13_S_contig11609.1393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11609:3035..4169+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAAATTCATCATGTCGATCGTACTGCCGGAATTGCCGTGGGCGAAG
GACGCCCTCGCTCCCCACATCAGTGCCGAGGCTGCGGAAGACAGCGGCAA
TCCTGAGGCCGGCCACAAATAGCCTTCTGCAGAGGGCTCAGATGGCGACG
ATAGTCGCGCATGCCGCACTGCCCAAGCGGCAGGCGGACTTGAGGGAATT
TGTGTAG
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