mRNA_Ecto-sp13_S_contig11605.1392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11605.1392.1
Unique NamemRNA_Ecto-sp13_S_contig11605.1392.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: D8LSK0_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK0_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 6.420e-148
Identity = 212/219 (96.80%), Postives = 217/219 (99.09%), Query Frame = 1 
Query:    1 RYILSLVVRLVIVGGAMSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDYCSEHECSNPLMS 657
            RYILSLVVRLVIVGGAMSLI+DQYMLPTVHEWYDSDPAAN+LVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWN+NTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLN  FGDDQQAGNWLFW+LFCVVGQPMSLLCYYRDYCS+HECSNPLMS
Sbjct:  181 RYILSLVVRLVIVGGAMSLIADQYMLPTVHEWYDSDPAANILVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNANTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNDTFGDDQQAGNWLFWLLFCVVGQPMSLLCYYRDYCSQHECSNPLMS 399
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: A0A836CDX9_9STRA (O-acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX9_9STRA)

HSP 1 Score: 284 bits (727), Expect = 7.360e-85
Identity = 133/215 (61.86%), Postives = 165/215 (76.74%), Query Frame = 1 
Query:    4 YILSLVVRLVIVGGAMSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDYCSEHECSNP 648
            Y+ +L VR  I    M+LI +QY+LP +   +      ++L + E LL L +P+TYVWLL FY FFH+ LNLLAE+  FGDRLFYRDWWN+ TI +YWRLWNLPVHYWM+RH+YFP LRAG+SK+MAS LCF+LSAV HELL+SVPF MVKFYAFFGM+ N  LVP+T  ++   G   QAGNW+FWV+FC VGQPMS+L YYRDYCS++ C+ P
Sbjct:  210 YVANLAVRCCIALLLMTLIVEQYILPALQTSFHPITRGDLLSTAETLLALCIPSTYVWLLIFYGFFHVLLNLLAEL--FGDRLFYRDWWNATTIEAYWRLWNLPVHYWMVRHMYFPCLRAGISKTMASVLCFVLSAVFHELLISVPFRMVKFYAFFGMLANVLLVPITKAVDDYCGKGSQAGNWIFWVVFCFVGQPMSVLLYYRDYCSDNHCTMP 422
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: A0A7S2CUJ8_9STRA (Diacylglycerol O-acyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CUJ8_9STRA)

HSP 1 Score: 241 bits (614), Expect = 5.140e-71
Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 1 
Query:    4 YILSLVVRLVIVGGAMSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKK-FGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDYCSE 630
            YI+ LVVR+  V  A+  +  Q+++P +    + +    +L  + RLL L VP TY+WLLGFY  FHL LNL+AE+LRFGDR+FY+DWWN+ T   YWRLWNLPVHYW++RH+YFP LR G S++ A+   FL SAV+HEL+VSVPFHM++ Y+F  M+G  PLV LT  L K  +     AGN LFW  FCVVGQPM++L YY D+ ++
Sbjct:    4 YIVGLVVRITCVCAAIMFLVQQHVIPVIAIETEDNTCIPILQFLNRLLKLTVPVTYIWLLGFYLIFHLFLNLMAEILRFGDRIFYKDWWNATTFDQYWRLWNLPVHYWLVRHLYFPCLRYGFSRANAALAVFLFSAVMHELIVSVPFHMIRLYSFGAMLGQIPLVILTKRLEKNPYWASSYAGNALFWCTFCVVGQPMAVLLYYYDFTND 213
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: A0A7S3XU69_HETAK (O-acyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU69_HETAK)

HSP 1 Score: 241 bits (615), Expect = 2.410e-68
Identity = 110/206 (53.40%), Postives = 144/206 (69.90%), Query Frame = 1 
Query:    7 ILSLVVRLVIVGGAMSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDYC 624
            +L L+ R+ I    M  +  QYMLP            N +  +ER+L +AVP+TY+WLLGFY FFHL +NLLAE+LRFGDR FY+DWWNS +  +YWRLWN+PVH+W++RH YFP  R G  K++A+   F LSAVLHEL++SVPF MV+ YAF GM+G  PL+  T  L     +  QAGN +FWV+FC++GQPM+LL YY D+C
Sbjct:  236 VLGLLARICIFSALMVFVIQQYMLPAAEHSVVHVVEGNYVRMVERVLVMAVPSTYIWLLGFYVFFHLYMNLLAELLRFGDREFYKDWWNSTSFEAYWRLWNMPVHHWIVRHAYFPLQRMGCGKNLATLGVFFLSAVLHELVISVPFKMVRLYAFLGMMGQIPLMISTKYLESSMKEKSQAGNVIFWVIFCILGQPMALLLYYIDFC 441
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: A0A7S2S7G3_9STRA (Diacylglycerol O-acyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7G3_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.280e-66
Identity = 107/204 (52.45%), Postives = 143/204 (70.10%), Query Frame = 1 
Query:   13 SLVVRLVIVGGAMSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNK-KFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDY 621
            SLV+R+ +    M  +  Q+++P + +  D     +++  +ERL+ L +P TY+WLL FY FFHL LNL+ E+LRFGDR+FY+DWWN+ T   YWRLWNLPVHYWM+RH+YFP LRAGL ++ A  L F  SAV HELLVSVPFHM++FYAF  M+G  PLV +T  L +     +   GN+LFW  FC +GQPM++L YY D+
Sbjct:   79 SLVLRMFVTSSLMIFLGQQHVVPIIEKATDPISRLDLVGILERLVKLTIPVTYLWLLMFYLFFHLFLNLIGELLRFGDRVFYKDWWNATTFEEYWRLWNLPVHYWMVRHLYFPLLRAGLGRTQAMLLVFTFSAVFHELLVSVPFHMLRFYAFGAMLGQIPLVGITKKLAQVPLWKNLSGGNFLFWATFCFIGQPMAVLLYYYDW 282
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: UPI0011D23A8E (diacylglycerol O-acyltransferase 1 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D23A8E)

HSP 1 Score: 229 bits (585), Expect = 1.230e-63
Identity = 109/200 (54.50%), Postives = 142/200 (71.00%), Query Frame = 1 
Query:   22 VRLVIVGGAMSLISDQYMLPTVHEWYDSDPA-ANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRD 618
            V+LVI  G M  I +QY+ P V       P   N+L +IER+L L+VPN YVWL  FY FFHL LN+LAE+LRFGDR FY+DWWN+ T+  YWRLWN+PVH WM+RHIYFP LR G+ K +A  + FL+SA+ HEL ++VP H+ KF+AF G++   PLV +T+ L  KF ++   GN +FW +FC++GQPM LL YY D
Sbjct:  280 VKLVIFTGVMGFIIEQYINPIVQN--SQHPLKGNLLYAIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNAKTVEEYWRLWNMPVHKWMVRHIYFPCLRNGIPKGVAVLIAFLVSAIFHELCIAVPCHIFKFWAFIGIMFQVPLVLITNYLQNKF-NNSMVGNMVFWFIFCILGQPMCLLLYYHD 476
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: DAT1C_SOYBN (Diacylglycerol O-acyltransferase 1C n=3 Tax=Glycine max TaxID=3847 RepID=DAT1C_SOYBN)

HSP 1 Score: 230 bits (587), Expect = 1.380e-63
Identity = 108/200 (54.00%), Postives = 142/200 (71.00%), Query Frame = 1 
Query:   22 VRLVIVGGAMSLISDQYMLPTVHEWYDSDPA-ANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRD 618
            V+L+I  G M  I +QYM P V     + P   N+L +IER+L L+VPN YVWL  FY FFHL LN+LAE++RFGDR FY+DWWN+ T+  YWR+WN+PVH WM+RHIYFP LR G+ K  AS + FL+SAV HEL ++VP HM K +AF G++   PLV +T+ L  K+ +    GN +FW +FC++GQPMS+L YY D
Sbjct:  312 VKLIIFTGVMGFIIEQYMNPIVQN--STHPLKGNLLYAIERILKLSVPNVYVWLCMFYCFFHLWLNILAELVRFGDREFYKDWWNAKTVEEYWRMWNMPVHKWMVRHIYFPCLRRGIPKGAASLIAFLVSAVFHELCIAVPCHMFKLWAFIGIMFQVPLVLITNYLQNKYRNSM-VGNMIFWFIFCILGQPMSVLLYYHD 508
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: D9U3F8_9BORA (O-acyltransferase n=2 Tax=Echium pitardii TaxID=113445 RepID=D9U3F8_9BORA)

HSP 1 Score: 229 bits (583), Expect = 1.770e-63
Identity = 109/200 (54.50%), Postives = 142/200 (71.00%), Query Frame = 1 
Query:   22 VRLVIVGGAMSLISDQYMLPTVHEWYDSDPA-ANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRD 618
            ++L+I  G M  I +QY+ P V       P   N+L +IER+L L+VPN YVWL  FY FFHL LN+LAE+L FGDR FY+DWWN+ TI  YWR+WN+PVH WM+RHIYFP LR G+ K +A  + FL+SA+ HEL ++VP H+ KF+AF G++   PLV LT++L KKF  +   GN +FW  FC++GQPMSLL YY D
Sbjct:  268 IKLIIFTGLMGFIIEQYINPIVKN--SQHPLKGNLLYAIERVLKLSVPNIYVWLCMFYCFFHLWLNILAELLCFGDREFYKDWWNAQTIEEYWRMWNMPVHKWMVRHIYFPCLRNGMPKELAILIAFLISAIFHELCIAVPCHIFKFWAFIGIMFQVPLVLLTNVLVKKF-QNSMVGNMIFWCFFCILGQPMSLLLYYHD 464
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: F0YLU4_AURAN (Diacylglycerol O-acyltransferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLU4_AURAN)

HSP 1 Score: 220 bits (561), Expect = 3.880e-63
Identity = 103/210 (49.05%), Postives = 143/210 (68.10%), Query Frame = 1 
Query:    1 RYILSLVVRLVIVGGAMSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDYCSE 630
            R++L     L +V  AM L+  Q++ PTV    +     +V   +ERL+ LA+P  +VW+L F A F L L+++AEV RFGDRLFYRDWWN+     YWRLWNLPVH W++RH++FP L  GL+K+ A+ + F +SA LHELLVS P H+++ YAF GM+   PL+ LT+ +N++     +AGN LFW++FCVVGQPM L+ Y+ D  SE
Sbjct:   35 RWLLKRFAELAVVLSAMLLLVTQFVAPTVRGTLEPFERLDVASLVERLMALAIPTLFVWILMFVALFELWLSIVAEVTRFGDRLFYRDWWNARKFDDYWRLWNLPVHNWLVRHVFFPCLNLGLNKTAATAVVFFISAALHELLVSAPCHLLRLYAFAGMMTQVPLIALTNAINERL-PSSRAGNVLFWLVFCVVGQPMCLVLYFHDTVSE 243
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BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Match: A0A0D2QHV5_GOSRA (O-acyltransferase n=19 Tax=Gossypium TaxID=3633 RepID=A0A0D2QHV5_GOSRA)

HSP 1 Score: 228 bits (582), Expect = 4.960e-63
Identity = 107/200 (53.50%), Postives = 141/200 (70.50%), Query Frame = 1 
Query:   22 VRLVIVGGAMSLISDQYMLPTVHEWYDSDPA-ANVLVSIERLLTLAVPNTYVWLLGFYAFFHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYFPSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLVPLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRD 618
            ++L+I  G M  I +QY+ P V       P  AN L +IER+L L+VPNTYVWL  FY+FFHL LN+LAE+LRFGDR FY+DWWN+ T+  YWR+WN+PVH WM+RHIY P LR G+ K +A  + FL+SA+ HEL ++VP H+ K +AFFG++  APLV +TS L  KF      GN +FW +FC++GQP  +L YY D
Sbjct:  297 IKLIIFTGLMGFIIEQYINPIVQN--SQHPLKANFLYAIERILKLSVPNTYVWLCMFYSFFHLWLNILAELLRFGDREFYKDWWNAKTVEEYWRMWNMPVHKWMVRHIYLPCLRNGIPKGVAVLIAFLVSAIFHELCIAVPCHLFKLWAFFGIMFQAPLVLITSYLQNKF-QSSMVGNMIFWFIFCILGQPTCVLLYYHD 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11605.1392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSK0_ECTSI6.420e-14896.80Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpu... [more]
A0A836CDX9_9STRA7.360e-8561.86O-acyltransferase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2CUJ8_9STRA5.140e-7153.33Diacylglycerol O-acyltransferase n=1 Tax=Dictyocha... [more]
A0A7S3XU69_HETAK2.410e-6853.40O-acyltransferase n=1 Tax=Heterosigma akashiwo Tax... [more]
A0A7S2S7G3_9STRA1.280e-6652.45Diacylglycerol O-acyltransferase n=1 Tax=Rhizochro... [more]
UPI0011D23A8E1.230e-6354.50diacylglycerol O-acyltransferase 1 n=1 Tax=Syzygiu... [more]
DAT1C_SOYBN1.380e-6354.00Diacylglycerol O-acyltransferase 1C n=3 Tax=Glycin... [more]
D9U3F8_9BORA1.770e-6354.50O-acyltransferase n=2 Tax=Echium pitardii TaxID=11... [more]
F0YLU4_AURAN3.880e-6349.05Diacylglycerol O-acyltransferase (Fragment) n=1 Ta... [more]
A0A0D2QHV5_GOSRA4.960e-6353.50O-acyltransferase n=19 Tax=Gossypium TaxID=3633 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11605contigEcto-sp13_S_contig11605:2..4833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score224.6
Seed ortholog evalue4.3e-56
Seed eggNOG ortholog3847.GLYMA09G07520.2
Preferred nameDGAT
Model size2228
KEGG rclassRC00004,RC00041
KEGG koko:K11155
KEGG ReactionR02251,R02366,R02367,R08381
KEGG Pathwayko00561,ko00830,ko01100,ko04975,map00561,map00830,map01100,map04975
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005975,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006950,GO:0006970,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010029,GO:0010030,GO:0010033,GO:0010154,GO:0012505,GO:0016020,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019432,GO:0022414,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0033993,GO:0034284,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045995,GO:0046460,GO:0046463,GO:0046486,GO:0048316,GO:0048518,GO:0048580,GO:0048582,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0061458,GO:0065007,GO:0071704,GO:0097305,GO:0098827,GO:1900140,GO:1901576,GO:1901700,GO:2000026
Exons6
EggNOG free text desc.O-acyltransferase
EggNOG OGs37KI3@33090,3GEXH@35493,4JIZH@91835,COG5056@1,KOG0380@2759
EC2.3.1.20,2.3.1.75,2.3.1.76
Cds size612
COG Functional cat.I
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11605.1392.1prot_Ecto-sp13_S_contig11605.1392.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11605 50..3265 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462610.4190047-UTR-Ecto-sp13_S_contig11605:1..491681462610.4190047-UTR-Ecto-sp13_S_contig11605:1..49Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11605 2..49 +
1681462610.5108824-UTR-Ecto-sp13_S_contig11605:3265..48331681462610.5108824-UTR-Ecto-sp13_S_contig11605:3265..4833Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11605 3266..4833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462610.4440625-CDS-Ecto-sp13_S_contig11605:49..701681462610.4440625-CDS-Ecto-sp13_S_contig11605:49..70Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11605 50..70 +
1681462610.452293-CDS-Ecto-sp13_S_contig11605:603..7621681462610.452293-CDS-Ecto-sp13_S_contig11605:603..762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11605 604..762 +
1681462610.4606316-CDS-Ecto-sp13_S_contig11605:1490..15921681462610.4606316-CDS-Ecto-sp13_S_contig11605:1490..1592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11605 1491..1592 +
1681462610.4712932-CDS-Ecto-sp13_S_contig11605:2096..22161681462610.4712932-CDS-Ecto-sp13_S_contig11605:2096..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11605 2097..2216 +
1681462610.4802446-CDS-Ecto-sp13_S_contig11605:2683..27761681462610.4802446-CDS-Ecto-sp13_S_contig11605:2683..2776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11605 2684..2776 +
1681462610.4909813-CDS-Ecto-sp13_S_contig11605:3148..32651681462610.4909813-CDS-Ecto-sp13_S_contig11605:3148..3265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11605 3149..3265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11605.1392.1

>prot_Ecto-sp13_S_contig11605.1392.1 ID=prot_Ecto-sp13_S_contig11605.1392.1|Name=mRNA_Ecto-sp13_S_contig11605.1392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MSLISDQYMLPTVHEWYDSDPAANVLVSIERLLTLAVPNTYVWLLGFYAF
FHLTLNLLAEVLRFGDRLFYRDWWNSNTIGSYWRLWNLPVHYWMIRHIYF
PSLRAGLSKSMASGLCFLLSAVLHELLVSVPFHMVKFYAFFGMIGNAPLV
PLTSMLNKKFGDDQQAGNWLFWVLFCVVGQPMSLLCYYRDYCSEHECSNP
LMS*
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mRNA from alignment at Ecto-sp13_S_contig11605:2..4833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11605.1392.1 ID=mRNA_Ecto-sp13_S_contig11605.1392.1|Name=mRNA_Ecto-sp13_S_contig11605.1392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11605:2..4833+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTATATCCTGTCCCTCGTTGTGAGGCTCGTCATCGTGGGGGGCGCCAT
GAGCTTGATTTCCGACCAGGTGCGGGTGTTAAGTTTTCTGTCTTCCCATA
CCTCGTGGGTGGCCGAGAGAAGAAACTTGAACTGACCAGCAGCGCACCTG
TTTGATAGCTCGCTTGCTTTCTCCAAGCGTGTCTTGTCGCCGCCATGTGT
GCCACTTCGCGTGCCGTTTCCTGCGCCGTTTTTCGCAAGCCCCTTGCCCT
CCGTCGCTGGTCTATTGATCGCTCTTCACATCACACCGCACGTCATTTTC
CCGTGCTCCACCATTTCCTGCAAAGCCCGTTTCCCTCGTGGTTTAGTTTC
CTGTCGCCTCACACCACACGTTTTTCCCCTGCCCTGCTGTTGTGCCTTCT
GTGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGCCACCCACNNNNNNNNNNCCCTTCCCTCTTGGTTTTTTTTTTTC
TTTCCCCCCCCCCCCCCCTTTTCCCCCCCCCCCCCGTTGTGGTTTTTTTG
CTCCCCCCCCCCCCCCCCCCCCTCCCCGCTGCAAACCTGACTCCGCGAGC
AGTACATGCTGCCCACCGTGCACGAGTGGTACGACTCCGACCCCGCCGCC
AACGTCCTGGTCTCGATCGAGCGGCTACTGACCCTCGCCGTCCCGAACAC
TTACGTCTGGCTGCTGGGTTTCTACGCTTTCTTCCACCTTACCCTCAACC
TCTTGGCCGAGGTTTGTTCGTCTCACGTGCCCCCGGACATTCGCCGCACA
AGCAGTAACAACCCCGACAAGTAGCTTAATAGTACGTTGAGTCCCCAGCG
GTGTGCATGGCGTCGAGTCGTCTTTCTTAGGCCTCCTTTTGTGTCCGGGT
TTGTGTGTTTGGCCGTGGAGTAACTTTCGTGGTACGAGTATGTGTTCCTG
GACGGATTCCGATGTGGGATACTTTTCTTCCCAGGACATGAAATCCACAA
GGGACCTCTCTCCGGAGTTAGCTTATGATATACTCAGCAGTGTCATCAAC
GGGTGATGTAAGATGACAATAGATTGCAGGCAGCTGGACCAGCCCACAGC
TGGCTGCCGGCTGCCGGCTGCCAGTTGTTTGTGACGTTGCCGGAGCTCAA
CAGCTCACACAAGGCTGGCGTTTTTTTTACTCGACCGAGCCCATCGAAAA
AAAAGAAAAAAAAAGAAGAAGCGATACGTAAGTCTTGTGGTCGTGACGTT
TCTTGTGTTTTTCTGTGGGGGCCTCAATTGCTGTATTGCTTTTCGTCTAT
TTCTTTTTTTTCAGGTGTTTCGGTGACCGGCTCTTAAACGTGCTTTGTGT
CTAGATCGCGCCGATCGAAACTCAACCGCCCAACAGCAACAAATGAAAAA
TCTGTACAAGGTCATACTTGCTCTGTGGTGGTGACGTTTTTTTGGGCCTC
AACTGCTGTATTTCCTTCCGCCTTTTTTTTTCTTTCCAGGTTTTGAGGTT
CGGTGACCGGCTCTTTTACAGGGATTGGTGGAACTCCAATACCATTGGCT
CGTACTGGCGACTGTGGAACCTTCCGGTGCACTACTGGATGGTGAGCGCG
AGCGTACAAGTAGTTAACCCCATTGCTTCGGCGAAGACGGAGATAAGGGG
CGACGCAGATTGTGAATGTTCAGTCTTGAGCTAGGGCAATACTCATCCCT
TATGCTCACATTCAATCCTCGTCACGACTCACGTAGACCTCGTCCGGGAA
TCGTCGCCACCGTTTTTTATTTTTTTGTTCCGTATCACACGCCGAGACCC
AAAACAGCGCTCGGCAACTGCGGACCTCTGCTAGTTGGCTGTGCACCAGC
CTGCGATATCTTCGCAGCAGCTACGGATTATTGCTCCTGCTTGTACGCAC
ACGCCACGCAGGCGAATCATCACATCGCGAATTGAGCCAGCGCCAATTGT
CCTTTGAGTGGGTTGCCCGTTGCCTGACACTTATCTCATGGTTCCAAGCA
ACGCATGCTTACATCCTCGATGTTTTCGGGTTTCCTCCTCCCCCACAACA
CACACACGCGCTTCCTTCCGTGTTTTTTCGACAAAAAAATCGAAGATTCG
TCACATTTACTTCCCTTCTCTGCGCGCGGGGCTGAGCAAGAGCATGGCCT
CGGGGCTGTGCTTCTTGCTCTCTGCGGTGCTCCACGAGCTCCTGGTTTCG
GTGCCCTTTCACATGGTGAGATGACGATCTACGGCATGTTTGCTATGAAG
ACGACGATCCACGTTCTATGCTGTTATTGGCGGTATGCTCGAAGCTGAAC
CCCAAACTAACAACGCCTACAAGCGCGTGAAACCCGAAAGCGAAAACATG
GTAGGCCGCAGTTCTGTAGCCTGCTGGTCGGCCAATAGAGGCATATGTGT
AGCCCTGCTTCGCCCTTTGAACGTGGTTATTGGTCTTCATTGTCATGACC
CTGTAGCAGTCAACACCGCTGCCACGCTTGCGTACGTACGCACGTTCGAG
ATAGGGATAATGCAGCTGGTAAGAAGATGCGTGCTTGTTGTTCTTGTCCA
GTCTCGAAGGATGAACGCCCGATTAAAGACAGGTTGACGTGCAATCGTGG
AACCAGCGGAGTACGGACAACGCTTGGTGCCCACTCCCTGAAAGATGCCT
GCTCGCCCTTCGTCTCTGCAACGCCGAAACAGGTGAAGTTTTACGCGTTC
TTCGGCATGATCGGGAACGCGCCCTTGGTTCCGCTGACCAGCATGCTGAA
CAAAAAGTTTGGCGACGATCAGCAGGTGAGATCAGTGCAGGAAGTGTGCA
ACTTGACCCTACTTTGGCTGTGAGTCGCCGTGCTTGTTTGCAGAGGGTTA
GGAAGCAAGAGCAGGCAGTGCTCCGCCCACCAGTTGTCGAATATCATCCT
TCAGTACGGAGAAGACCGAGGCACCACCTCCTGTTTCGAGAGGGATACCC
AAACGTGCTTCCCCACACCGAAAACGACCTGCGGCCGAGTTACTGAAGCC
TCTTGACGCTCCGTTGCCACCCACCCTTCCCGTCCTGTCTATGGTGTGAT
CACCAAAGGAAGGCGTGCAAAACCTCAGTACACCACCCCCTACCCGTCCG
TTCTCCTCGATCCGCTATTTTTGATCTTCATTATGACGAAAACGAAGGCT
GGGAACTGGCTCTTCTGGGTGCTTTTCTGCGTGGTGGGGCAGCCCATGTC
CCTGCTATGCTATTACCGGGACTACTGCAGCGAGCACGAGTGCTCCAACC
CGCTCATGAGCTGACAAGCTTCCGCATCTACGGCAGCCTTGTGTGACGCA
ACTGCCGTGTCCGTCTCCGCGAGAGAGAAACGGTCGGCCGGGGTTAAGCC
GGCGCGGCCTTGCAAGTTGTCAACGACTGACTATTTGCTTGCCGCAGATG
CTCAACTTTGCTTGCGTTTCGGTGCTTGATGCGTTGAGGCGGTCATCCCG
CCCGCCCCTTGCGTGCTGCGAGATGCACGGACGCTTTGTATTTCTTCTCG
TGAGGGATTCGCCGCTCTCTGGCGGCAATTTGTTTGGTCACGAGGTTAAA
GTTGAGTATTGATCCCGTTGTTCTTGCGCGAAGAACTCGGCAGTTGTTGT
TGATCACGGGGTTTATTGTTGTTGATTCGGTTGGTTCTCGTTCGAAGAAC
ATGTCGCGCGACAGGCGTGCGTGTGATTCGTTTTCCTGGTATTTTATTAC
TTGTAAAGGTTGTCGTTGGGCGGGTTTTGTCGTGCGAGAAGTCGCGCGAT
TTCGTGTGTTTCGTTTTTCTGAGAGATGAAAGTTGTGACGTAAGGCGAGA
TCGGCCTTGCGGCGAGCCCGTAGCTTCGCACCGGAGACACAACACGTGCC
AACGTCTCGTCCGTCCATTGCGAGGGGGCATGGGCGTTGTGGCTCAAATG
TTTTCGCGGGAAGGGGAGATGTTCTCCCTGTTTTCTCTGGGCAGTATTGT
ACCTCGAGACTGTCGTTGATAGTCGCTCCGTTCCTTGCTGACGGCGTATT
GATATCATGCATGGCGGCAAGGAACAACTGGGTCTGGGTTTGTGCAGTTC
ATGATTGATTGCATGCCCAGGTTCTCGTGGAGTTATGTGCCGAGTATCTC
CGGAAATGTACCAAGGGCTTCACTTGTTTGTATAGGTTGAACCGAGCAGG
TAAGCAGATCACTGGCCCAGCCTTGCATGGTAGAGTAGTTTGATCTTACC
TGTGGAGAAGATGATTTCCGGAGAATAATTGAGTGGCCGGGGTTTGCCGA
GTAGTGTTGTGTTGCTTGTGTTTTTTTGTTATTAGCATCGACCGCGCTAA
GTGGCCCACCAATGAAAAGACGTCAGTCTCAGTGCGGGTGAAAACAAAGA
AGAGAAGGAATGATATACGTGTAGTCTATGCCCGGGTGGATTATCACTAT
TTCAGGGTACACTTGAAAATTAACGCGACACCAATCTCCGAGAGCATCCG
CCGTAGATCGCGGCGAAACCAATGAACCGCTGTCTGTGTCCTGTTCCTGT
GCCTCGGAAGCATAATGTACGAGGCAGGTCGTACCCGTTTTGCTCTCTCT
GTGTGCCTCTCTCTCTGTGCTTTTATTGACCAGCACCACACCGAACGAAC
TCGTGCGTCAAGCGAGTCCGACCCTCTGTCGAGATGGGCCGGTATCCTAT
GGAGGCGGTGCCCATGAACGATGAATGAGCGAGCGTTGTTAGTGGTTTGG
TTGTGGTGGTGTATGTGCGGTACACGGTATGTATGTGTTGTACCCGATTT
TCTCTGCGTTTTTTTTGCCAGAGTGTCGGGCGGCGGGATTATGTGACCTC
CCTGGGTACAAAATCGAATTTTTCCGGGTACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11605:2..4833+

>mRNA_Ecto-sp13_S_contig11605.1392.1 ID=mRNA_Ecto-sp13_S_contig11605.1392.1|Name=mRNA_Ecto-sp13_S_contig11605.1392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11605:2..4833+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTTGATTTCCGACCAGTACATGCTGCCCACCGTGCACGAGTGGTA
CGACTCCGACCCCGCCGCCAACGTCCTGGTCTCGATCGAGCGGCTACTGA
CCCTCGCCGTCCCGAACACTTACGTCTGGCTGCTGGGTTTCTACGCTTTC
TTCCACCTTACCCTCAACCTCTTGGCCGAGGTTTTGAGGTTCGGTGACCG
GCTCTTTTACAGGGATTGGTGGAACTCCAATACCATTGGCTCGTACTGGC
GACTGTGGAACCTTCCGGTGCACTACTGGATGATTCGTCACATTTACTTC
CCTTCTCTGCGCGCGGGGCTGAGCAAGAGCATGGCCTCGGGGCTGTGCTT
CTTGCTCTCTGCGGTGCTCCACGAGCTCCTGGTTTCGGTGCCCTTTCACA
TGGTGAAGTTTTACGCGTTCTTCGGCATGATCGGGAACGCGCCCTTGGTT
CCGCTGACCAGCATGCTGAACAAAAAGTTTGGCGACGATCAGCAGGCTGG
GAACTGGCTCTTCTGGGTGCTTTTCTGCGTGGTGGGGCAGCCCATGTCCC
TGCTATGCTATTACCGGGACTACTGCAGCGAGCACGAGTGCTCCAACCCG
CTCATGAGCTGA
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