mRNA_Ecto-sp13_S_contig11602.1391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11602.1391.1
Unique NamemRNA_Ecto-sp13_S_contig11602.1391.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11602.1391.1 vs. uniprot
Match: A0A6H5L1W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W1_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.320e-48
Identity = 89/112 (79.46%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:  220 MPNPEAQQAWRRRCLNRLVRAIGTGDNASVACALKQGGRYVLNERDDNGLLPIHRATIRAPASVVHLLIQAGADLEATFQGLASXXXXXXXXXXXXXXXXXXXXXNRDALTA 555
            MPNPEAQQAWRRRCLNRLVRAIGTGDNASVACAL+QGGRYVLNERDDNGLLPIHRATI+APASVVHLLIQAGADLEATFQGLAS                     NRDALTA
Sbjct:    1 MPNPEAQQAWRRRCLNRLVRAIGTGDNASVACALQQGGRYVLNERDDNGLLPIHRATIKAPASVVHLLIQAGADLEATFQGLASMHVACGRGLEGMVHVLLAGGANRDALTA 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11602.1391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1W1_9PHAE1.320e-4879.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11602contigEcto-sp13_S_contig11602:2..3468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size570
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462610.3483944-CDS-Ecto-sp13_S_contig11602:1..2361681462610.3483944-CDS-Ecto-sp13_S_contig11602:1..236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11602 2..236 -
1681462610.362541-CDS-Ecto-sp13_S_contig11602:3133..32491681462610.362541-CDS-Ecto-sp13_S_contig11602:3133..3249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11602 3134..3249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462610.3711226-UTR-Ecto-sp13_S_contig11602:3249..34681681462610.3711226-UTR-Ecto-sp13_S_contig11602:3249..3468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11602 3250..3468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11602.1391.1prot_Ecto-sp13_S_contig11602.1391.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11602 2..3249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11602.1391.1

>prot_Ecto-sp13_S_contig11602.1391.1 ID=prot_Ecto-sp13_S_contig11602.1391.1|Name=mRNA_Ecto-sp13_S_contig11602.1391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MPNPEAQQAWRRRCLNRLVRAIGTGDNASVACALKQGGRYVLNERDDNGL
LPIHRATIRAPASVVHLLIQAGADLEATFQGLASMHIACGRGLEGMVHVL
LAGGANRDALTAQGFTP
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mRNA from alignment at Ecto-sp13_S_contig11602:2..3468-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11602.1391.1 ID=mRNA_Ecto-sp13_S_contig11602.1391.1|Name=mRNA_Ecto-sp13_S_contig11602.1391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11602:2..3468- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCACGCATCTTTCTTGCAGAAGATGTCATCATGGCTAAGCAGGCAGA
AAACAGTCGAATCCCAAAGAAAAGGTTCCATTCGATCGCATACCTCCCAC
CCGTGCCTCGTGGCAATCCGTGTACACACAAGGGCCTCTCCCACTGCATG
GATGGAGTGACTAAAGAATTTCGCTTTTAGGCAACACCGCGTTCACACGA
ACATCAGTGTCGTAGAGGAATGCCCAACCCCGAGGCCCAGCAGGCATGGA
GAAGAAGATGCTTGAACCGACTTGTACGAGCGATCGGGACAGGAGACAAT
GCGAGTGTGGCGTGTGCGTTAAAACAGGGTGGAAGGTATGCACATGATGA
TAATGGGGAGTACTGCTGTAGTTTCTGAGAGATGGTTTCGTGTGTCACCA
AAAACGGGCAACACAAACGTAAAGAGTGCTCTTGCAAGTTCCGCACACGA
GATCCCCTGGCATGCCTACAGCAGGGGCTTCGAGCTACAAGTGCGCAGTC
AGTAGAGAGCAAGCATGTGCCGCTCATTTCGCATGCGCAGCAAGGGTCCG
TTCTGTCCGATCAGCACGAAGTCTTCCCGTACTTTTCCGACCCTTAGTAA
GAGTACATTCAAGACTATATAGTGTAGGTTCCGGGGTGAACGATGTGGGT
GAATGCTTCGCAGGATCAGGAAGCATATCTCTATCGACCAAAGACAACGA
ACTGCTACAAAACTCTCAACAACCTGCCACAGGCGAGGTTCGTATCATCA
GGGGGATTTTGATGGTCGGAACCATTATCCACGATCAAGACATGAAGATT
CACGTTCATTCACAGCAAGTTCCGATGCATAGGGTGGATGGATTAGACTC
ACGCCCTACGGCAAAGCCTACAGGGAGCTGTAGACTTCGGGGTGAACGAT
GTGGGTGGATGCTTCGCAGGATCAGGAAGCATACCTCTATCTACCAGAGA
CAACAAACTGCTGCAAAACTCTCAACAACAAGAGTAGTACTGCCACAGGC
GAGGTTTGTGTCATCAGGGGGGTTTTCTGGTCGGAACCATTATCCACGAC
ATCAAGACATGAAGATTCACATTCACAGCGAGTTACCCTGCATATAGGGC
GATGGATGAGGCTGATGCCCTACGGCAAAGTCAGCGAAGGCACCCACCAG
CCGAGAGTTGGTGCTTGCCTCCGTCGCACTTCTTCGCTACTGCTGTAGTT
GTCTGTCCAAGGAGTTTCGAAATACAGTAGGGGGCCCGATATGAGGCGGT
GTGGATAAGGCGGTGTTGTTGTTGTTGTTGTTGTTTGTCTTCACATTAAA
CAGTATGCCAGTTGCTAAATGCCAAAATCTAGCAAAGGCTCTCAGCCCGT
GGTCACGAAAGTGCTAGAGCCATCTGAGGAGCTAAAGGACACGCACACAC
ACGTAACAAGAACAAGGTGTACCCGAGATGTAAGGCGGTCGAAAGTTGCG
TCCACAACTCAGACCCGGTATAAGGCGGCCACCGCCTTGTACCGGGTCTG
GGCCTGTACAAGGCGGTATCTGCCTATCTCAAACCCGATGTAAGGCAGTG
ATCATCTTCGCGTGAGTTCACCCTCTGGGAAGAAGCATCGAAGCGATGAG
GGCACGTGAAACGCCTGGATCTGAACAACAGTTAACACGTGGCACATCTA
AACCCGTGTGGCAACCGGACATGATAATATATTCTTTTAGACGGATGTAG
AAATTTCAAGGCTCCTCTCGGTACCGATTTCTCCATAGTAACGATTGGTT
CGGGAACCATCGACCACCGAAATTCACGCATTTTCCGGATGATAGCTGGT
CATCACGGTGGTTACTTACGGCAACCAACAACCGCGGTATTGCACGGTAA
TACTGGGGTGGTGGTAACTGGCCACCACGGCATTTCCTTACGGGAACCAG
CCACCACGGTGATGCAACGAAATACTTGCATGGTACAGTAACTGGCCACC
ACGTAATGCACGGTAACGTTGGATGGTAACGCCGTACGGCGATGCAACGT
AATTGTGTTGGATGGGAATGGGAGAAGCCCATTTACTTGAGAATGGTTTG
GGCGGATACGGTAACTAACTGCGGATTAGCACGGCAAGACGTTACCAGCT
ACTATTTCCGAGGAGTTGCCGCGGGAAAAGTACCGCGTGAAACTACCCTG
TAGGTCCCTGTTGGTAGTTATTTTTGAGCTATTTATTGTCTTTCGCCGTG
CAGGTTTGTTGCAAAGAGGGGCATGTGTTTTCAGAGATACAAGCCCCGGG
GGAAGTTGTGCTTAACCCGTACCCAGGGGGCAAGCGCCATTGACGCAGAA
CACATGTTTTTCTTCGGTACACAACAGGATCATTGCATGGTGGGTCCGTG
TTGGCTGTTGGGTTGGTAAGTAGCAGAGTCGTCGTTCCTCGCTATGACAC
CCGATCGGATGTACACGCCGCTGCTGAAAATGTTACGTTCGCAAACTAAC
ATACATGTGTGTGCATACCGTCATGGTGCACGTGACCATCCTCTTCCACT
CAACAACGCGCCGTGAGGCGACAACCGCAGTAAACCTCTGCCTTTCGCCC
TGAATAAGGCGCTTTACAGCCTCATTCATGAATAAGGCGGCTGCCCGATA
TAAGGCGGTTGTGTTCACCACGCACACCACTGTCTTATATTGGGCCCCCT
ACTGTATTAATTTCAGTGGGTAGAAATTCAAACGCATAACAGCGAGAATA
CATAGCTATACCATTCCATTCCATTCCAGTCGGATTCCGAACGTCAAGCG
TTCAGCCTACAGCAGGAGTAGTTCTAAGTTGGTGCTACTGTAGTCCCGTT
CGAATTCCGAGTTTCAATGGTCCGCTACAGGTGGCTACCCGCGACAAGCA
TCTGTGTCTTGTGGCTGGTACAGACAATTTCCAAGTCGCCCACCGCATGC
ATATCCGCCACAACCCCTGTGCAACATACACGTACATGCTCGTAGTTGGC
ATATTCCCACCATTGTGCCATTTTATAAGAAGCTCGTGGCAAACTCGTGG
GTGTGTCTTGCGGTGCGCGCTTGAGCATGCACCTGTCCGCAGCTTGATCG
GCACGCCAAATCACACACACGCAAGAAAAATACGTTCACTCAGTTTGTGG
GACCATGACGGGCGGTGGTGCACGATCGTGAATCTGATGCAAGCTGCAAT
ATATTCCCGGCACAGATCCTGTTTGATTTGAGCCTCTGACTGACAAAAGT
CGCCCTTCTCGACGGTCTTGCTGCCTTCACAGATATGTGCTAAACGAAAG
AGACGACAATGGTCTTCTACCCATACACAGGGCAACCATCAGGGCTCCCG
CTTCGGTCGTCCATCTCCTTATTCAGGCGGGCGCCGATCTAGAGGCAACG
TTCCAAGGCCTCGCTAGCATGCACATTGCATGCGGGAGAGGACTGGAAGG
CATGGTGCACGTGTTGCTTGCGGGAGGAGCCAACAGGGACGCCCTGACCG
CCCAAGGATTCACTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11602:2..3468-

>mRNA_Ecto-sp13_S_contig11602.1391.1 ID=mRNA_Ecto-sp13_S_contig11602.1391.1|Name=mRNA_Ecto-sp13_S_contig11602.1391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11602:2..3468- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCAACCCCGAGGCCCAGCAGGCATGGAGAAGAAGATGCTTGAACCG
ACTTGTACGAGCGATCGGGACAGGAGACAATGCGAGTGTGGCGTGTGCGT
TAAAACAGGGTGGAAGATATGTGCTAAACGAAAGAGACGACAATGGTCTT
CTACCCATACACAGGGCAACCATCAGGGCTCCCGCTTCGGTCGTCCATCT
CCTTATTCAGGCGGGCGCCGATCTAGAGGCAACGTTCCAAGGCCTCGCTA
GCATGCACATTGCATGCGGGAGAGGACTGGAAGGCATGGTGCACGTGTTG
CTTGCGGGAGGAGCCAACAGGGACGCCCTGACCGCCCAAGGATTCACTCC
C
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