mRNA_Ecto-sp13_S_contig11592.1383.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11592.1383.1
Unique NamemRNA_Ecto-sp13_S_contig11592.1383.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11592.1383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11592contigEcto-sp13_S_contig11592:4797..5231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size435
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462609.0269969-UTR-Ecto-sp13_S_contig11592:4796..48461681462609.0269969-UTR-Ecto-sp13_S_contig11592:4796..4846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11592 4797..4846 +
1681462609.0453038-UTR-Ecto-sp13_S_contig11592:5197..52311681462609.0453038-UTR-Ecto-sp13_S_contig11592:5197..5231Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11592 5198..5231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462609.0366256-CDS-Ecto-sp13_S_contig11592:4846..51971681462609.0366256-CDS-Ecto-sp13_S_contig11592:4846..5197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11592 4847..5197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11592.1383.1prot_Ecto-sp13_S_contig11592.1383.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11592 4847..5197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11592.1383.1

>prot_Ecto-sp13_S_contig11592.1383.1 ID=prot_Ecto-sp13_S_contig11592.1383.1|Name=mRNA_Ecto-sp13_S_contig11592.1383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MKVRKCTVDSNSDLRIIGILLLHIHESRWRFSLETGNIPRLEGAGVEPQA
VVYMTFAGSYRANISYVPPIVDLFSSWLADDCKNSVYWTSRRSTIFETNR
RIGVVSAILTSRVGLT*
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mRNA from alignment at Ecto-sp13_S_contig11592:4797..5231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11592.1383.1 ID=mRNA_Ecto-sp13_S_contig11592.1383.1|Name=mRNA_Ecto-sp13_S_contig11592.1383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11592:4797..5231+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTCGGCGCCCGTTTCCGAGGTAGGCATCATTTTTCCGTGCGGAGACAG
ATGAAAGTGAGAAAGTGTACAGTTGACAGCAATTCGGACTTGCGGATAAT
CGGCATACTGCTTCTCCACATTCATGAGAGTCGTTGGAGGTTTTCGTTGG
AGACGGGAAACATTCCCCGTTTGGAAGGCGCAGGGGTTGAGCCTCAGGCA
GTAGTGTATATGACTTTTGCTGGATCGTACCGAGCCAACATTTCTTACGT
ACCACCAATTGTCGACCTGTTCTCTTCTTGGCTCGCTGACGATTGCAAGA
ACTCCGTGTATTGGACCAGTCGCAGGAGCACTATTTTTGAAACCAACAGA
CGTATCGGAGTAGTGTCAGCTATTCTTACAAGCAGAGTTGGCTTGACTTG
AGACCCATAATAAAATATCGAGGGTGGCACAGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11592:4797..5231+

>mRNA_Ecto-sp13_S_contig11592.1383.1 ID=mRNA_Ecto-sp13_S_contig11592.1383.1|Name=mRNA_Ecto-sp13_S_contig11592.1383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11592:4797..5231+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGTGAGAAAGTGTACAGTTGACAGCAATTCGGACTTGCGGATAAT
CGGCATACTGCTTCTCCACATTCATGAGAGTCGTTGGAGGTTTTCGTTGG
AGACGGGAAACATTCCCCGTTTGGAAGGCGCAGGGGTTGAGCCTCAGGCA
GTAGTGTATATGACTTTTGCTGGATCGTACCGAGCCAACATTTCTTACGT
ACCACCAATTGTCGACCTGTTCTCTTCTTGGCTCGCTGACGATTGCAAGA
ACTCCGTGTATTGGACCAGTCGCAGGAGCACTATTTTTGAAACCAACAGA
CGTATCGGAGTAGTGTCAGCTATTCTTACAAGCAGAGTTGGCTTGACTTG
A
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