mRNA_Ecto-sp13_S_contig11591.1382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11591.1382.1
Unique NamemRNA_Ecto-sp13_S_contig11591.1382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11591.1382.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-6
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 3 
Query:  558 QYHIPASAKAMARRELKEALHHGGQGPRSMMV 653
            +YHIPASAKAMARRELKEALHHGGQ  RS+MV
Sbjct:   46 KYHIPASAKAMARRELKEALHHGGQAARSVMV 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11591.1382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G873_ECTSI1.170e-687.50Chromodomain-helicase-DNA-binding protein 8 n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11591contigEcto-sp13_S_contig11591:475..2500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score60.5
Seed ortholog evalue8.6e-07
Seed eggNOG ortholog2880.D7G873
Model size745
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.SET domain
EggNOG OGsCOG0553@1,COG2940@1,COG5076@1,KOG0383@2759,KOG0384@2759,KOG1075@1,KOG1075@2759,KOG1081@2759,KOG1474@2759
EC2.1.1.43,2.3.1.15,3.6.4.12
Cds size486
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462608.9640756-CDS-Ecto-sp13_S_contig11591:474..6791681462608.9640756-CDS-Ecto-sp13_S_contig11591:474..679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11591 475..679 -
1681462608.9768202-CDS-Ecto-sp13_S_contig11591:1195..14761681462608.9768202-CDS-Ecto-sp13_S_contig11591:1195..1476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11591 1196..1476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462608.9866974-UTR-Ecto-sp13_S_contig11591:1476..16691681462608.9866974-UTR-Ecto-sp13_S_contig11591:1476..1669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11591 1477..1669 -
1681462608.9982846-UTR-Ecto-sp13_S_contig11591:2436..25001681462608.9982846-UTR-Ecto-sp13_S_contig11591:2436..2500Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11591 2437..2500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11591.1382.1prot_Ecto-sp13_S_contig11591.1382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11591 475..1476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11591.1382.1

>prot_Ecto-sp13_S_contig11591.1382.1 ID=prot_Ecto-sp13_S_contig11591.1382.1|Name=mRNA_Ecto-sp13_S_contig11591.1382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MNGHGQWPPPQQQLQQMAQQQYHQQQQQPQQQQQPYQQQQQPLSPGVGQG
APGNADVLPSSEQLEIEATKRGMPPLDTCLRRCPRCLQGVPIRSMMCPHC
QYHIPASAKAMARRELKEALHHGGQGPRSMMVNGGGGAAGGYDGYQAEKQ
QQHEQQGAVAAA
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mRNA from alignment at Ecto-sp13_S_contig11591:475..2500-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11591.1382.1 ID=mRNA_Ecto-sp13_S_contig11591.1382.1|Name=mRNA_Ecto-sp13_S_contig11591.1382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11591:475..2500- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGGCCCATGGGTCTGTGGGAACATTTGAATTAGCATCATCCAGGTCG
TTCAACATCGAAAGGTGAGCATCCCACACTCTCGCTGGTCGCTGCAAATA
GCTGACATGGCTGGCACTGAAGCAGTGGTATCTCACAGCAGGAGGAACGG
GCCCGTGCAGCAGTGTGTCGCGTAGGGGAGCTGGGGGGGGTTCTCGATGG
CGCAGCCCGTGCACACACCCTAACGTTCGTTCGTTTGCCCATCAACAGCG
CAGGCGGGCAAAGGTGATCTTTCAGCAAGATTTCACCCGCAACGTTTCAT
GTTTGAATCGGAAGCCCATGCAGTTAATTTTGGGCACCCGGGACGTTGGC
TGGGGTAGTGTGTGTGCGCTGCCGTTCTCCGTGAGCGTGTCCTTTCCCGT
GCCGTACGCCCGCAGAGCGCGGAGGCTCCGTTCCCCTTACGAAAAGAGCG
GCGCGTTCGACGAAAACACGCTTTGGTTTCGCTTGCTGCTTCCTTCCGGA
CAGTTTAGCACAATAGAAGAGCTTATTGGGGAACCGCAGGAGCTTACAGG
TTGTGGGGTGCTTTGGCGCCGCCGTAGGGGATGTCGGCCGAGCTTCAAAA
GCGTTTTTTTTTTGCAGAGCGCTGCACCTGGTACCTCTCTCTCTATCTCC
CTCTCTATTCTATAACATCAACACTTTTTCAAAATCACGGCGAGTTGGTG
TTTGGACGGATGTCCTCACCGACTGATGGTGCTCGTCGCCCACGCGCTCA
AACCCATCCCCGCCTGTTCCTTAAACCATTGTGCACCTTTGGGTTTACCC
TTTTCGGCCCGACGTTCCTCCTAAATCGCAGGCAAACTTGGTCTTTGTAC
TGCTCTCTCCCAAATTCAGGCACGGAGAAACCCCCAAGATTTCTTCCGAC
TGAAAACGGCAGCAGGCGAGCAGGGGAGGGGTAGCAGGCAAGGACAGGGG
TACCACACACCCCGTGTGGTGCCTTTGTCGAAGCTAACGGCCCCAGTACT
AGCCGCTCCTAGCGATCCCTAGCCATGAACGGCCACGGTCAGTGGCCGCC
GCCGCAGCAGCAGCTGCAGCAGATGGCGCAGCAGCAGTATCATCAACAGC
AACAGCAGCCGCAGCAGCAGCAGCAGCCCTACCAGCAGCAACAGCAACCG
CTCTCGCCTGGCGTGGGCCAAGGAGCACCGGGAAACGCCGACGTGCTACC
ATCCTCCGAACAACTCGAGATTGAGGCAACGAAGAGGGGCATGCCGCCGC
TGGACACCTGCCTCCGCCGCTGCCCCCGGTGCCTGCAGGGCGTACCCATC
CGCAGGCAAGCCACCAGATGACACACGCGTCAGTCATCATAAAGAGAACC
ACCCTCTGGCACACGCGTGGTGGAGCACGCCTTTATCCATTCTCTCAGCG
AGCAGTAGTGTGGTTGTGTTGTGTCGCACAACGCTTGCTGTTGTCTCTGC
TGTGTCATGAACCCAAGGTGGAAGATGATTGGCGGAACAAAGACTTGACT
GGAGAAAAAGGAACACGCCGTTACTGCTGTACGCTCCGCTCCTACGTTGG
ATACCACCCCGAGCTTTGCCTTATCGACGCCCCCCATTTTTTTTTTTCAA
CATGGTGGGAAGGTGTTGGACGATTAGATCCTGTATCCTCAAGGAAGCCC
GCTGAAAGAACGTGTGCTCGAGAGCTGCTGCAACGTCCCAAAGCGTTGAC
GGTTATGTTCGTCTCGACCAACATCGGTGTCTTGCTCCCTTTTCTTGTTC
TCCCCCGCCTCCCACTGCCCTTGGGGCGCCTGTCCGCTCATCCCCCACCC
CCCTTTCTTTCTCGCTCTCAGCATGATGTGTCCGCACTGTCAGTACCACA
TCCCAGCGTCCGCCAAGGCAATGGCGCGTAGAGAATTGAAGGAAGCGCTG
CACCACGGCGGCCAGGGCCCAAGAAGCATGATGGTCAACGGCGGCGGCGG
GGCGGCCGGAGGATACGACGGCTACCAAGCCGAGAAGCAGCAGCAGCATG
AGCAACAGGGAGCGGTGGCGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11591:475..2500-

>mRNA_Ecto-sp13_S_contig11591.1382.1 ID=mRNA_Ecto-sp13_S_contig11591.1382.1|Name=mRNA_Ecto-sp13_S_contig11591.1382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11591:475..2500- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGGCCACGGTCAGTGGCCGCCGCCGCAGCAGCAGCTGCAGCAGAT
GGCGCAGCAGCAGTATCATCAACAGCAACAGCAGCCGCAGCAGCAGCAGC
AGCCCTACCAGCAGCAACAGCAACCGCTCTCGCCTGGCGTGGGCCAAGGA
GCACCGGGAAACGCCGACGTGCTACCATCCTCCGAACAACTCGAGATTGA
GGCAACGAAGAGGGGCATGCCGCCGCTGGACACCTGCCTCCGCCGCTGCC
CCCGGTGCCTGCAGGGCGTACCCATCCGCAGCATGATGTGTCCGCACTGT
CAGTACCACATCCCAGCGTCCGCCAAGGCAATGGCGCGTAGAGAATTGAA
GGAAGCGCTGCACCACGGCGGCCAGGGCCCAAGAAGCATGATGGTCAACG
GCGGCGGCGGGGCGGCCGGAGGATACGACGGCTACCAAGCCGAGAAGCAG
CAGCAGCATGAGCAACAGGGAGCGGTGGCGGCGGCG
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