mRNA_Ecto-sp13_S_contig11571.1368.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11571.1368.1
Unique NamemRNA_Ecto-sp13_S_contig11571.1368.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11571.1368.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.370e-5
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:    3 RK*AHPTPSWSHRSFESSRGASRQRH--HNRGGTTRSG 110
            RK AHPTPSWSHRSFES RGASRQR    +R G TR G
Sbjct:   42 RKQAHPTPSWSHRSFESGRGASRQRDPVEHRFGHTRQG 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11571.1368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2C2_9PHAE1.370e-573.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11571contigEcto-sp13_S_contig11571:2107..2560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.6946483-CDS-Ecto-sp13_S_contig11571:2106..21831681462607.6946483-CDS-Ecto-sp13_S_contig11571:2106..2183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11571 2107..2183 +
1681462607.7107391-CDS-Ecto-sp13_S_contig11571:2481..25301681462607.7107391-CDS-Ecto-sp13_S_contig11571:2481..2530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11571 2482..2530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.7195466-UTR-Ecto-sp13_S_contig11571:2530..25601681462607.7195466-UTR-Ecto-sp13_S_contig11571:2530..2560Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11571 2531..2560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11571.1368.1prot_Ecto-sp13_S_contig11571.1368.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11571 2107..2530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11571.1368.1

>prot_Ecto-sp13_S_contig11571.1368.1 ID=prot_Ecto-sp13_S_contig11571.1368.1|Name=mRNA_Ecto-sp13_S_contig11571.1368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
RGNEHIPRPAGVIAHLRAVAALRDNGTTIGGVRQGAEPPGK*
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mRNA from alignment at Ecto-sp13_S_contig11571:2107..2560+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11571.1368.1 ID=mRNA_Ecto-sp13_S_contig11571.1368.1|Name=mRNA_Ecto-sp13_S_contig11571.1368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11571:2107..2560+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGAAATGAGCACATCCCACGCCCAGCTGGAGTCATCGCTCATTTGAG
AGCAGTCGCGGCGCTTCGAGACAACGGGTAAGTGTGACACCATAGAGTCC
GGGGGTGGGGGTAGAGGAGCATGTCTACAGCGTGTAAATGTTGTTGATGA
ACATGCGCATCTTGTCGACGAAGCTCTAGGCCTGGGTTTCCTACGAGGTG
CCGCGCTATACGTCCCTCTGTCCTGCTCATTCTCGTCCCCCGATCCTCAC
CCCTTTGCGTTGTCTTTCGCTAGGTGGAAACGCCATTAGATATCGCCCTC
GAAGAGTTCAACTTCCTCTCTTCGGATGATCCAACGCAGCTGAAAACCTG
GTTACCTTTGTGCCTCTATCTCAAGCACCACAATCGGGGGGGTACGACAA
GGAGCGGAACCGCCGGGGAAGTGATAGGGTGGGTGCGTGCTTGGCTAGCC
GAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11571:2107..2560+

>mRNA_Ecto-sp13_S_contig11571.1368.1 ID=mRNA_Ecto-sp13_S_contig11571.1368.1|Name=mRNA_Ecto-sp13_S_contig11571.1368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11571:2107..2560+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGAAATGAGCACATCCCACGCCCAGCTGGAGTCATCGCTCATTTGAG
AGCAGTCGCGGCGCTTCGAGACAACGGCACCACAATCGGGGGGGTACGAC
AAGGAGCGGAACCGCCGGGGAAGTGA
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