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Homology
BLAST of mRNA_Ecto-sp13_S_contig1154.1345.1 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI) HSP 1 Score: 699 bits (1805), Expect = 2.570e-249 Identity = 399/425 (93.88%), Postives = 405/425 (95.29%), Query Frame = 1
Query: 220 LSRRAIPRMRRLLSSSSDQAAEAHAQLESLHEVSKAVDLAALGRRAEAAPLLERAVEICSGSMGEDSALTRAAVHRLAQVLYDDQRFGAAEATLRKGESNARKQFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQALSGEKDDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATTTESDEHKEPTXXXXXXXXXXXXXXXXXXXXXATSKVARLAHASVLSTAAQGELVLERGTATASERLGEALRIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEADDGIARSQRSAGAVALPLLFASPLHPYTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPGGLTLHMLHLDDVY 1494
LS+RAIPRMRRLLSSSSDQAAEA+AQLESLHEVS AVDLAALGRR EAA LLERAVEICSGSMGED ALTRAAVHRLAQVLYDDQRFGAAEA LRKGESNARKQFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQ LSGE+DDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATT+ESDEHKEPT XXXXXXXXX XX ATSKVARLAHASVLSTAAQGELVLERGTATASERLGEAL+IREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEE DDGIAR QRSAG VALPLLFASPLHP+TKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPP GLTLHMLHLDDVY
Sbjct: 3 LSQRAIPRMRRLLSSSSDQAAEANAQLESLHEVSTAVDLAALGRRTEAASLLERAVEICSGSMGEDCALTRAAVHRLAQVLYDDQRFGAAEAILRKGESNARKQFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQVLSGEEDDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEACATTSESDEHKEPTAXXXXXXXXXGGXXNDAAASAATSKVARLAHASVLSTAAQGELVLERGTATASERLGEALKIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEVDDGIARRQRSAGTVALPLLFASPLHPHTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPVGLTLHMLHLDDVY 427
BLAST of mRNA_Ecto-sp13_S_contig1154.1345.1 vs. uniprot
Match: A0A835ZDH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH7_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.890e-41 Identity = 136/394 (34.52%), Postives = 195/394 (49.49%), Query Frame = 1
Query: 406 MGEDSALTRAAVHRLAQVLYDDQRFGAAEATLRK----GESNAR-KQFPTELLLLSKAQLFQGKIPVAVETSSRAVDLCQQDEDN-TPDTDALGQALRQLGVIQALSGEKDDAETSLLRAARLGSTSADQGKG-----------------LAAVAAFNIARGDEQSVEEAVELLNEACATTTESDEHKEPTXXXXXXXXXXXXXXXXXXXXXATSKVARLAHASVLSTAAQGELVLERG------------TATASERLGEALRIREQLLPIGHPATAWTLSLLARCHVAAGEAVTAEGLFRAALDSLQGIAEEADDGIARSQRSAGAVALPLLFASPLHPYTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPGGLTLHMLHL 1482
MG+++ LT+AA RL LY R AEA +R G+ A+ ++ +LL+++AQLFQGK+ A T + AV C+ TPDT ALG ALR LGV+Q L G+ D AETSLLRAARL +ADQ K L+++AA++++ + +A+E EA + T +D + T + + HA L+ A+ L G T S L EAL++ EQ + P W L+ LARC AG AVTAEGLFR+A++ + D R +++ + SP + + TL YS+LLLQWEKREA G + ++A+ +E+ L LK P ++L MLHL
Sbjct: 1 MGKEALLTQAANRRLGLTLYRAGRLAEAEAAVRAAVGAGDGAAQLAEYVGAVLLVARAQLFQGKLAAAAATCADAVRACEDGVSGATPDTAALGNALRSLGVVQLLRGDGDAAETSLLRAARLSDGAADQAKARIARQGPAVARVLVVCALSSLAAYSMSIETAEGHRDALEYWQEAVSVLTAADAQAAASACAK------------------TKRELQETHAITLTNLAEAALTGAPGPYETAGAGGKADTERPSAHLREALKLSEQSMGHNDPYLGWVLAQLARCCHLAGSAVTAEGLFRSAMEKM-------DPEDVRGKQALA------MHPSPANIFLLQGTLSMYSQLLLQWEKREAVGRKMQQRAQDLEAGLPLKLPPRVSLPMLHL 363
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1749 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-10_001530.1 |
| Cds size | 1380 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462605.832608-UTR-Ecto-sp13_S_contig1154:1..118 | 1681462605.832608-UTR-Ecto-sp13_S_contig1154:1..118 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1154 2..118 + |
| 1681462605.9331832-UTR-Ecto-sp13_S_contig1154:3775..4027 | 1681462605.9331832-UTR-Ecto-sp13_S_contig1154:3775..4027 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1154 3776..4027 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462605.8432705-CDS-Ecto-sp13_S_contig1154:118..229 | 1681462605.8432705-CDS-Ecto-sp13_S_contig1154:118..229 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 119..229 + |
| 1681462605.8525727-CDS-Ecto-sp13_S_contig1154:616..834 | 1681462605.8525727-CDS-Ecto-sp13_S_contig1154:616..834 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 617..834 + |
| 1681462605.863506-CDS-Ecto-sp13_S_contig1154:1058..1179 | 1681462605.863506-CDS-Ecto-sp13_S_contig1154:1058..1179 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 1059..1179 + |
| 1681462605.872867-CDS-Ecto-sp13_S_contig1154:1375..1480 | 1681462605.872867-CDS-Ecto-sp13_S_contig1154:1375..1480 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 1376..1480 + |
| 1681462605.8811448-CDS-Ecto-sp13_S_contig1154:1705..1816 | 1681462605.8811448-CDS-Ecto-sp13_S_contig1154:1705..1816 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 1706..1816 + |
| 1681462605.8922896-CDS-Ecto-sp13_S_contig1154:2119..2467 | 1681462605.8922896-CDS-Ecto-sp13_S_contig1154:2119..2467 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 2120..2467 + |
| 1681462605.9019217-CDS-Ecto-sp13_S_contig1154:2729..3020 | 1681462605.9019217-CDS-Ecto-sp13_S_contig1154:2729..3020 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 2730..3020 + |
| 1681462605.911853-CDS-Ecto-sp13_S_contig1154:3700..3775 | 1681462605.911853-CDS-Ecto-sp13_S_contig1154:3700..3775 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1154 3701..3775 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1154.1345.1 >prot_Ecto-sp13_S_contig1154.1345.1 ID=prot_Ecto-sp13_S_contig1154.1345.1|Name=mRNA_Ecto-sp13_S_contig1154.1345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
MSSPVSHSLFYPFRRCFVIISRSNMVFLGTRRAGLSRRAIPRMRRLLSSS SDQAAEAHAQLESLHEVSKAVDLAALGRRAEAAPLLERAVEICSGSMGED SALTRAAVHRLAQVLYDDQRFGAAEATLRKGESNARKQFPTELLLLSKAQ LFQGKIPVAVETSSRAVDLCQQDEDNTPDTDALGQALRQLGVIQALSGEK DDAETSLLRAARLGSTSADQGKGLAAVAAFNIARGDEQSVEEAVELLNEA CATTTESDEHKEPTATAEEESEKERGDGNGAAASAATSKVARLAHASVLS TAAQGELVLERGTATASERLGEALRIREQLLPIGHPATAWTLSLLARCHV AAGEAVTAEGLFRAALDSLQGIAEEADDGIARSQRSAGAVALPLLFASPL HPYTKAATLRGYSELLLQWEKREAEGEVVARQAEKVESSLLLKPPGGLTL HMLHLDDVY* back to topmRNA from alignment at Ecto-sp13_S_contig1154:2..4027+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1154.1345.1 ID=mRNA_Ecto-sp13_S_contig1154.1345.1|Name=mRNA_Ecto-sp13_S_contig1154.1345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1154:2..4027+ (Ectocarpus species13 EcNAP12_S_4_19m) GCTCCTTGGTGGGTAACTGGTGGCTGAAAGTATTTTTGCACCTACACTTC
TTCCAAACAACATACTTGCTGATTGTGCATACCAATGTAACCTCGGGTCT
CTTGGCTTTCGGCATCTATGTCATCCCCTGTGTCCCACAGCCTCTTCTAT
CCGTTCCGCAGGTGCTTCGTCATTATATCGAGAAGCAATATGGTTTTCCT
CGGTACGAGACGAGCTGGGCTCTCGCGGGTAAGACTATTGTGGGTGGTTT
ACTTGAGAGTGGAGGTCGCACTGAGACACCGCGACCTAGAGCGACGTCTG
CGTATCGCTGTACATACGGTAGTTCTGCTTCTCTTCTACCCGGCTGTGTG
CTCTCTGATCGTGTGCCATACATCAACATCGTGTTCGTGTTTAATTTACT
TGAGATTCGGTACGGAATCGGAGATATTGTACGGACATCGGAGATATTTA
CACGCATAGAGCCAGCATTCGAGCTATGCTGCTGCATTTTCATGTTTTCA
TATAACCCAAAGCCCCCTTCGCTATCTGTAACCACAACTCTCTCTTCCAC
TACGAGCACGGCTGATCAATCACCTCCCCGCCTTGCCACGCATCCACCGC
ATGCTTCTCTCGCAGCGGGCAATACCTCGAATGCGCCGCCTCTTGTCTTC
GTCCTCGGATCAGGCGGCGGAGGCGCATGCCCAACTCGAGTCCCTGCACG
AAGTTAGCAAAGCGGTAGATCTGGCTGCTCTAGGCCGTCGTGCGGAAGCA
GCGCCTCTCTTGGAACGGGCTGTCGAAATATGCTCCGGGTCTATGGGAGA
AGATAGCGCGCTCACCCGAGCCGCTGTGCACAGGTAGGGTTCTCCGCTTA
GGTGTTTTTTTGGCTATACTCGACATCATTTCTATAGGTAGAGGTAGGTC
TGCAATATACCACCGTTACACATGCCAGCCTATCAAACGTGAGCCGACAA
CCTTATTGTCACATGCCGTCGTAACTGTAAATCCTTTAACATATCTTGGG
TTTGCTGCGGTAGCTTCTTCATCCTGTTGGCTCTGTTGCAACCCGTACGT
GCTGCAGGCTGGCGCAAGTTTTGTACGACGACCAGCGATTTGGGGCGGCG
GAAGCGACCCTCCGAAAGGGAGAATCTAATGCTCGGAAACAGTTCCCGAC
GGAGCTGCTCCTACTTTCCAAGGCTCAGGTGCGTACTTTTCCAAGAATCC
TGTGGCGAAGCAACCTACGCCGAGCACGGCAGCACGTCTGTCGGCACATG
GCGTTTAGAATCGCGTTGGAAGAATTGCCCACATGTTGGTGTTGATCTGA
CACCTTGCTGATGTGGACTTGCACATGAGTTGGACACCTCTGTCGCCCTT
TACGCCACAACCACCGCTCCGCAGTTGTTCCAGGGGAAGATACCCGTAGC
GGTTGAGACCTCTTCCCGTGCTGTGGATCTCTGCCAACAGGATGAAGACA
ACACACCGGATACGGACGCCTTGGGGCAGGTGATCACCGAAGAAATCGTT
TGTATGCTTTCTCACGAATCGATAGACTTGTTACGTTAACAAGTACGTGC
TGGGCATTAGCACGTCATCTGGCCTGGTTGTCAGGTGTCGTTTACGCTGA
GAGGTTCCTGTGCATGATGGATTGCACCCGTGTATGTGTTTTCCCCAGAA
AAATATTCTGTATCCTTCCCGTGACGTCGAGTCGCCTTCGTCTACCTGCG
CCAGGCCTTGCGGCAGCTAGGAGTGATCCAAGCGCTCAGTGGAGAGAAAG
ATGACGCGGAAACGAGCTTGCTCAGGGCGGCTAGGCTTGGCTCCACTTCC
GCCGACCAGGGCAAGGTGTGAAGGGCCAGAATGCACAGCGTGTCTTGGCA
AACCAGCAACCATTTCCTCAGGATGTAGAGCATGACCTAGAAGCGCGATG
ACGACTGGGTTGCTTTGGCATTCGCTCGATGACTGAGAAGACTATGCGAC
ATCACCTACCAAGCCTTACTCCAATGACCGTATTTTGTAGATACTCGGTT
TGTGGTTCGGTCATGACAAGCGCCATTGAAATCGAGCGTTGATCGGAGGA
TGTTTACAGTCCTATGATATTTCTGGTCCTACCCCTGAAACATGAAATCG
TGCTCACGCCGAAAACAGGGATTGGCAGCAGTGGCCGCATTTAACATCGC
GCGGGGGGACGAGCAGAGCGTCGAGGAAGCGGTTGAACTCCTGAACGAGG
CATGTGCCACGACGACAGAGTCCGACGAGCATAAAGAACCCACCGCGACA
GCTGAAGAGGAAAGTGAAAAAGAGCGTGGTGACGGCAATGGTGCTGCTGC
TTCCGCTGCCACCTCCAAGGTGGCACGACTTGCGCATGCCTCCGTGCTAT
CGACCGCGGCGCAGGGGGAGTTGGTTCTAGAGCGGGGCACGGCAACGGCC
TCGGAGCGACTAGGAGAGGCGCTTAGGATCAGAGAGCAGCTGCTTCCCAT
TGGCCATCCGGCAACGGTAAGGAATAAACAACTTCGATTCATATCTCTTC
GTCTATTGGGTTGGTCTACCTACCGTCCTTTCGATAGCGTCACCAGAGTC
AAGTGACTTCGTTTGAAGTACAGAATTTTCCCAGTCCCCCTCCATCGTCG
GTAGCTCCAGCACATAACCCATGGCAACAGATGGGCACGGAATAGATGTT
TTTTTTTTTGTTGTTCCGCGAGGCAGTGAAGTAGCATCTGCTGCTGGCAA
CTGTCGACGACGTTCGTGTTTCCCTCAGGCGTGGACGCTCTCCTTGCTGG
CGCGGTGTCACGTGGCGGCCGGCGAGGCTGTGACAGCTGAAGGCCTGTTC
CGCGCCGCGTTGGACAGTCTACAGGGCATCGCGGAAGAGGCCGACGATGG
TATCGCCAGAAGTCAGCGGTCGGCTGGCGCAGTGGCGCTCCCGTTATTGT
TTGCATCGCCTCTTCACCCGTACACGAAGGCAGCAACGCTTCGAGGCTAT
TCGGAGCTCTTGTTGCAGTGGGAAAAGCGGGAGGCGGAGGGGGAAGTCGT
GGCGCGGCAGGCAGAGAAGGTTAGTTCTCACCTATTGTAAAATCTGCGCG
TCATTGCGTCTTCAACATGTGCTTATATCTTCGGGACGACCGATATACCC
TCTCCTTAGTATCTTCTGATGCGAGTGTTTTTCGACGATACATGTTTGCA
GCTCTCGCAGAATGTCGCGTCGTGAAAATTTGCCTGCTTTTTGGAGGAAA
ACAAGCTATTTAGGCGCGAACGTGTGGTGAGATCTGAAGCTTTTGTTACC
AACACCTGCCGCGAAACAGGGGCACAAAATACGCAGCATGTTTTTTCTTG
CCATAACCTGCCATGGTCACGTATTCATTCGTCATTCGACTAGCTTTGTC
GATGTTAATTTAGAAACACATGTGCGTTGTGCGTACGTGTGTGAGGCCGC
AGAGCATTGCATTGGTATAGCTCTACAGACGACGTTGTGCCTGGCGAGGT
TACGTGAAGGGTCAGCTTGTGTAGGCCTGTGCTACTGCTCCACCTGTATC
TGGTTGTGATCCGATGCGACGTGCGTTGAAGTGTTGGTGCGTATGATATG
ACCTGGTTAACCTTCCCACATCCCCTTTGCGCACCTCGCTGGGGTAGCAG
CAAGCGCAAGATGCAAGGCCTGCTCTAAATAAAGCCCGACTTCATGATAG
CCGCTTGCCCGTTCGTGTGCTTGTGCGTACTCGTGCTTCAAAATCGCAGG
TGGAGTCGTCGTTGCTGCTCAAGCCGCCAGGGGGACTCACCTTGCATATG
CTGCACCTCGACGACGTTTACTAGAAGTGGACAACTACGCGAACATGCGT
GCGGCGTGCAAATTTCCAAAGGGTTGCTCTGGAGATTGTGTGAGATCCGC
GCGTTAATTTAGTTGATGTTGAGGCGCAGAGGCTGCCTGTGACATTTTTT
GGCGAAATCCTGCAGGCTTATAGAACGGCGACTGTAAGGTAGTTTGCGCA
CACCCTCGAACATCGCCAAGCGGAGTATTGTAGTTGGGGCGAGCCCGTTT
CGGTGAAAGAGGCGGTGATACGAACT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1154:2..4027+ >mRNA_Ecto-sp13_S_contig1154.1345.1 ID=mRNA_Ecto-sp13_S_contig1154.1345.1|Name=mRNA_Ecto-sp13_S_contig1154.1345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1154:2..4027+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCATCCCCTGTGTCCCACAGCCTCTTCTATCCGTTCCGCAGGTGCTT CGTCATTATATCGAGAAGCAATATGGTTTTCCTCGGTACGAGACGAGCTG GGCTCTCGCGGCGGGCAATACCTCGAATGCGCCGCCTCTTGTCTTCGTCC TCGGATCAGGCGGCGGAGGCGCATGCCCAACTCGAGTCCCTGCACGAAGT TAGCAAAGCGGTAGATCTGGCTGCTCTAGGCCGTCGTGCGGAAGCAGCGC CTCTCTTGGAACGGGCTGTCGAAATATGCTCCGGGTCTATGGGAGAAGAT AGCGCGCTCACCCGAGCCGCTGTGCACAGGCTGGCGCAAGTTTTGTACGA CGACCAGCGATTTGGGGCGGCGGAAGCGACCCTCCGAAAGGGAGAATCTA ATGCTCGGAAACAGTTCCCGACGGAGCTGCTCCTACTTTCCAAGGCTCAG TTGTTCCAGGGGAAGATACCCGTAGCGGTTGAGACCTCTTCCCGTGCTGT GGATCTCTGCCAACAGGATGAAGACAACACACCGGATACGGACGCCTTGG GGCAGGCCTTGCGGCAGCTAGGAGTGATCCAAGCGCTCAGTGGAGAGAAA GATGACGCGGAAACGAGCTTGCTCAGGGCGGCTAGGCTTGGCTCCACTTC CGCCGACCAGGGCAAGGGATTGGCAGCAGTGGCCGCATTTAACATCGCGC GGGGGGACGAGCAGAGCGTCGAGGAAGCGGTTGAACTCCTGAACGAGGCA TGTGCCACGACGACAGAGTCCGACGAGCATAAAGAACCCACCGCGACAGC TGAAGAGGAAAGTGAAAAAGAGCGTGGTGACGGCAATGGTGCTGCTGCTT CCGCTGCCACCTCCAAGGTGGCACGACTTGCGCATGCCTCCGTGCTATCG ACCGCGGCGCAGGGGGAGTTGGTTCTAGAGCGGGGCACGGCAACGGCCTC GGAGCGACTAGGAGAGGCGCTTAGGATCAGAGAGCAGCTGCTTCCCATTG GCCATCCGGCAACGGCGTGGACGCTCTCCTTGCTGGCGCGGTGTCACGTG GCGGCCGGCGAGGCTGTGACAGCTGAAGGCCTGTTCCGCGCCGCGTTGGA CAGTCTACAGGGCATCGCGGAAGAGGCCGACGATGGTATCGCCAGAAGTC AGCGGTCGGCTGGCGCAGTGGCGCTCCCGTTATTGTTTGCATCGCCTCTT CACCCGTACACGAAGGCAGCAACGCTTCGAGGCTATTCGGAGCTCTTGTT GCAGTGGGAAAAGCGGGAGGCGGAGGGGGAAGTCGTGGCGCGGCAGGCAG AGAAGGTGGAGTCGTCGTTGCTGCTCAAGCCGCCAGGGGGACTCACCTTG CATATGCTGCACCTCGACGACGTTTACTAG back to top
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