mRNA_Ecto-sp13_S_contig11533.1340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: D7G979_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G979_ECTSI) HSP 1 Score: 235 bits (600), Expect = 4.790e-77 Identity = 139/167 (83.23%), Postives = 141/167 (84.43%), Query Frame = 1
Query: 1 MMAQGFSSVFASAVCLLAASTSAFVVPSARVHALAPRAATXXXXXXXSALRTSARHSRRSALFMSDEAEEVAP-------AAEQDPTQDATASVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPDSI 480
MM QGFSSVFASAVCLL ASTSAFVVPSARVHALAPRAA XXXX LRTSARHSRRSALFMS+E AEQDP QDAT SVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIA LP PDS+
Sbjct: 1 MMVQGFSSVFASAVCLLTASTSAFVVPSARVHALAPRAAAATTXXXXXXLRTSARHSRRSALFMSEEXXXXXXXXXXXXXVAEQDPAQDATTSVKSFFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIALLPSPDSM 167
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A836C6Z0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Z0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 7.040e-13 Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 268 FFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVA-MSATIAFLPPPDS 477
FF PN N+R G+SRDQDGKSNVWA+EPKM+VE E + L G I+ A+ A + AT+A LP PD+
Sbjct: 79 FFQPNANMRYGASRDQDGKSNVWAIEPKMKVE----EGENKGASLATGAIILAVAAAAVVATLANLPSPDT 145
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A835YKW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10 Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 268 FFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESN-------SLLVVGGIVGAL 429
FF PN N+R G+SRDQDGKSNVWA+EPKM V+ D SN SL+VV G++ L
Sbjct: 86 FFQPNANMRYGASRDQDGKSNVWAIEPKMAVDTDDKSGALSNGFAVLAASLVVVAGVISQL 146
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A6V1QUM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QUM9_HETAK) HSP 1 Score: 65.9 bits (159), Expect = 2.110e-10 Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 271 FAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPDSI 480
FA NE R+G SRD+DGKSNVWAV PK V + + S SL +V L V ++ATI+FLP PDS+
Sbjct: 111 FANNERSRVGVSRDEDGKSNVWAVFPKEEVVDSQAD---SGSLSTAAVLVAGLSVLVAATISFLPSPDSL 177
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A7S2W9V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9V8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 4.510e-9 Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 268 FFAPNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPDSI 480
FF+ RLG+S DQDGKSNVWAVEPKM+VE E LV+GG A V + + LP PD I
Sbjct: 44 FFSTPPAQRLGTSVDQDGKSNVWAVEPKMQVE-VGKEGQGVQQALVIGGGAAAAVALATLIVNVLPDPDMI 113
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: K0R0P9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0P9_THAOC) HSP 1 Score: 58.2 bits (139), Expect = 5.050e-8 Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 289 VRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPDSI 480
+ G S DQDGKSNVWA+EPKM VE E + L V G+ GA V + ++ LP PD +
Sbjct: 45 IERGVSMDQDGKSNVWAIEPKMEVENKSSEEKTGSVLAAVAGL-GAFAVVAAGVLSNLPDPDQL 107
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: B8LD08_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD08_THAPS) HSP 1 Score: 57.8 bits (138), Expect = 6.480e-8 Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 1
Query: 280 NENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPD 474
N V G S DQDGKSNVWA+EPKM +E E +L+ VGG VA + ++ LP PD
Sbjct: 46 NNFVERGVSMDQDGKSNVWAIEPKMEIENKSTEEKTGGALIAVGGFAVFAAVA-AGVLSNLPDPD 109
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A7S2BRW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRW2_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 6.600e-8 Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 292 RLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPD 474
RLGSS DQDGKSNVWAVEPKM VE E ++GG A +A+ +A LP PD
Sbjct: 83 RLGSSVDQDGKSNVWAVEPKMEVE-VSKEGDGFKKTAIIGGGAAAAAIAVFGIVANLPNPD 142
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A6U2FP18_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2FP18_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.580e-7 Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 274 APNENVRLGSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPD 474
+P V G S DQDGKSNVWA+EPKM V+ E +++L+ VGG+ VA + + LP PD
Sbjct: 45 SPVNVVERGVSVDQDGKSNVWAIEPKMEVDTKSSEEKTTSTLVAVGGLAAFAAVA-AGILTNLPDPD 110
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Match: A0A7S0AI54_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AI54_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 7.030e-7 Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 298 GSSRDQDGKSNVWAVEPKMRVEGTDVETPESNSLLVVGGIVGALVVAMSATIAFLPPPD 474
G S DQDGKSNVWA+EPKM V+ E + +L+ VGG+ VA + + LP PD
Sbjct: 53 GVSVDQDGKSNVWAIEPKMEVDTKSAEEKTTGTLIAVGGLAAFAAVA-AGVLTNLPDPD 110 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11533.1340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11533.1340.1 >prot_Ecto-sp13_S_contig11533.1340.1 ID=prot_Ecto-sp13_S_contig11533.1340.1|Name=mRNA_Ecto-sp13_S_contig11533.1340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp MMAQGFSSVFASAVCLLAASTSAFVVPSARVHALAPRAATTTTTTSASALback to top mRNA from alignment at Ecto-sp13_S_contig11533:1678..5139+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11533.1340.1 ID=mRNA_Ecto-sp13_S_contig11533.1340.1|Name=mRNA_Ecto-sp13_S_contig11533.1340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11533:1678..5139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11533:1678..5139+ >mRNA_Ecto-sp13_S_contig11533.1340.1 ID=mRNA_Ecto-sp13_S_contig11533.1340.1|Name=mRNA_Ecto-sp13_S_contig11533.1340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11533:1678..5139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |