mRNA_Ecto-sp13_S_contig11526.1335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11526.1335.1
Unique NamemRNA_Ecto-sp13_S_contig11526.1335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11526.1335.1 vs. uniprot
Match: D8LJT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT2_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.780e-20
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 2 
Query:    2 LTPPMEYQGRNSGYPRGGVCVGGHRVNGNNATNNFSGAGVHEGLGHDHR 148
            LTPPMEYQGR+SGY RGGVCVGG RVNGNNATNN SGAGVHEGLGHDHR
Sbjct:  178 LTPPMEYQGRSSGYLRGGVCVGGQRVNGNNATNNISGAGVHEGLGHDHR 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11526.1335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJT2_ECTSI2.780e-2091.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11526contigEcto-sp13_S_contig11526:1088..3553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size821
Hectar predicted targeting categoryother localisation
Exons5
Cds size768
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11526.1335.1prot_Ecto-sp13_S_contig11526.1335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11526 1128..3540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462605.0697713-UTR-Ecto-sp13_S_contig11526:1087..11271681462605.0697713-UTR-Ecto-sp13_S_contig11526:1087..1127Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11526 1088..1127 -
1681462605.1437087-UTR-Ecto-sp13_S_contig11526:3540..35531681462605.1437087-UTR-Ecto-sp13_S_contig11526:3540..3553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11526 3541..3553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462605.0797658-CDS-Ecto-sp13_S_contig11526:1127..11501681462605.0797658-CDS-Ecto-sp13_S_contig11526:1127..1150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11526 1128..1150 -
1681462605.0924687-CDS-Ecto-sp13_S_contig11526:1342..14251681462605.0924687-CDS-Ecto-sp13_S_contig11526:1342..1425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11526 1343..1425 -
1681462605.1029618-CDS-Ecto-sp13_S_contig11526:2200..24201681462605.1029618-CDS-Ecto-sp13_S_contig11526:2200..2420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11526 2201..2420 -
1681462605.112951-CDS-Ecto-sp13_S_contig11526:2716..29841681462605.112951-CDS-Ecto-sp13_S_contig11526:2716..2984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11526 2717..2984 -
1681462605.1263824-CDS-Ecto-sp13_S_contig11526:3366..35401681462605.1263824-CDS-Ecto-sp13_S_contig11526:3366..3540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11526 3367..3540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11526.1335.1

>prot_Ecto-sp13_S_contig11526.1335.1 ID=prot_Ecto-sp13_S_contig11526.1335.1|Name=mRNA_Ecto-sp13_S_contig11526.1335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp
MEYQGRNSGYPRGGVCVGGHRVNGNNATNNFSGAGVHEGLGHDHRRRGGG
GGAAARTSQQMLAQQYQQSRDTGGGGGGTKWSPATSTCTGVGVESLQSPV
RIRRSVVPTAAAAASSVIGTGSRRLSRAAEGQQRQHQHRGGAANRGGGAR
WGLGSRRSGLVDGAGAAAGGEQYRHHQHPHQQQQDQYHQQPQHPHHYHHQ
QQQSGDGWCAKATGLRDVEDRFHQLKFGRARARNAGRRSHDDMPDPTAGM
RAPKR*
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mRNA from alignment at Ecto-sp13_S_contig11526:1088..3553-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11526.1335.1 ID=mRNA_Ecto-sp13_S_contig11526.1335.1|Name=mRNA_Ecto-sp13_S_contig11526.1335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11526:1088..3553- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTACGCCTCCGATGGAGTACCAAGGTCGAAACAGCGGCTACCCCCGAG
GGGGTGTGTGTGTGGGCGGGCATCGCGTAAATGGCAACAACGCCACAAAC
AACTTCAGCGGGGCGGGCGTGCATGAAGGCCTGGGGCACGATCATCGGCG
GCGCGGCGGCGGCGGAGGTGCAGCGGCGAGGACGTCTGTGAGTATGGCAC
CTTTGTTGCGGAGCAGGATGATGTTGCTGGGTGCAGGGGCGAGCCGAGCG
CTGTGTGAAAGGGGGGGCGGTTCCGGATAGTTGAGATGGTGGCGTTCAAG
TCGGATGCCAACGTTGAAAGTATGGGTGGGATCGAACAATAGCATTGGCT
GATGGGAAGCGCTTCGACTCGGAATTGTGCGCGGAGAGTTTGCAAATGAA
ACGGCCACGAATGCTGACAGCATTTTTTTTTTACCGCTGCGATAGCATTG
AAGCCGACCACGACTGGTCGTTTCAACGACGAGGGCATCAACAACGGCAG
TATTAATCAACAATCCTTTGACGGGCCGCTCACGTGCCCACCACACCGCG
TCGGATGCATGTGCAACAGCAGCAGATGCTGGCGCAGCAGTACCAGCAGT
CTCGTGACACGGGCGGCGGCGGCGGCGGCACCAAGTGGTCGCCCGCTACA
TCTACTTGTACAGGCGTGGGTGTCGAGTCATTGCAGTCCCCGGTCCGCAT
CCGTCGGTCCGTTGTTCCCACGGCGGCGGCGGCAGCAAGCAGCGTCATCG
GCACCGGGTCCAGGAGGTTGTCGAGGGCAGCAGAGGGACAGCAGCGGCAG
CACCAGCACCGTGGCGGCGCTGCCAACAGAGGAGGAGGTAATGCCCGTCA
CGTAATTTTTTGTTTTGTCGTGGAGCACAACAAATCCATATCTTCGACAG
ATACGAGTCCATGTTGTTTTTTCATCGTGCGTATGCGGCGGTCACCAAAG
CCACCGCCGTCAGCATTCAACAATGAACCCTGTCGACCAACTTCCTAGAG
GGTTCACACACACTGAAACGACATGTAAAAAATCGACTGTGTGAGCAGCT
ACAATCCGGACAAACTTTATCGTTCCCTAGGGCTTATTCGGATTCGTTAT
TTTGTGTCGGTGTTATTTTTTTCCGTGAAGCAGGGGCTAGGTGGGGGTTG
GGGTCGCGGCGCTCTGGTCTCGTAGACGGGGCCGGTGCGGCGGCTGGCGG
GGAGCAGTACCGTCACCATCAACACCCCCACCAGCAGCAACAGGACCAGT
ATCATCAGCAACCTCAGCACCCACACCACTATCATCATCAGCAGCAGCAG
AGCGGAGATGGGTGGTGCGCGAAAGCCACCGGCCTGCGCGACGTGGAGGA
TAGGTGAGCTGGGTGTAAGGTTGGAAGGGGTTACAGCCTGCCGTGACGTC
TCAAGGGCTCACAGGTTATTCAGATTGAAGTTTTTCTAGCGCCTCGACGA
CCTGACTTGCTTTGAGAGAGACTTTGAGCCTTTGATGGACTCCATGACAA
AACAAATGGAAACAGAGGGGAAAACATGGGAAAGCTTAAAATGGAGGTCA
TGCTTGGGAACTGATATTCTGCTGTCGTAAAACTTCATTGGCACAAACGA
TGGTAGGTGACAGCATAACCGCGGCCACCCAAATGGACGTTTATTTCTGG
AGACTCGACATGATCGCTTATCTCTCGTTTTTGGAACTGGACGTAAGGCA
ACAGTGTGTTATGCCATGGTGCGAATGGGGAAAGCGAGCTCCCGACGTAC
TTCTACCGCTCCGGTGTTTTTTCGAAGCACATCAGTCTGTTCAGTTACAG
TCGACCATGTCGCGGAATTCGCAAGGAAAGACGGGACGGGCAAGACGACA
AAGTCGATTACCCTGCAAACTGAATGCTGCATAACGCATTCTACGCTAGG
CGCTCGGTCTCGTATCTTCCTCTCGCTCCGCACCCCCTCTTCCCTTTGCA
ACAGCGTCGATCGTGGCTTGTCACACACACACTACCCGTGGGTCGTACCG
CCGTCTTTGGTTGTATTCTAATCTGCGACAAAAACTTTGATGATTCATGC
CTCGCCCGCCCTGCCCTTTCGGTTTCGCACCCTCGTGTTTTTATTGTCGG
ACCTGCTGTTTCGCGATGTTATTTCAAGGTTTCATCAACTCAAGTTCGGG
AGGGCGAGGGCCAGGAACGCCGGGCGGCGGTCCCACGACGACATGCCGGA
CCCCACAGCTGGCAAGAAACATGAGTTTTGAAAAGTGATACGAAACCATT
GTTCCGTGTAGTTGTATACCGTTTTTTCTTTCGTTACAGCTTGGCACGTT
TTCAAGTACTTTGGACCGCTTCTTTGAAGCATGAGACAGAACCTTGATCC
CTCGCACCTCACCCCGCACGCGTCAATGGACCACTGCCGTCCTCTCCCAA
CAGGTATGAGGGCACCCAAGCGCTGAACTAAAGACAACAAGATAGAAGCA
ATGAGACAGACACCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11526:1088..3553-

>mRNA_Ecto-sp13_S_contig11526.1335.1 ID=mRNA_Ecto-sp13_S_contig11526.1335.1|Name=mRNA_Ecto-sp13_S_contig11526.1335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11526:1088..3553- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTACCAAGGTCGAAACAGCGGCTACCCCCGAGGGGGTGTGTGTGT
GGGCGGGCATCGCGTAAATGGCAACAACGCCACAAACAACTTCAGCGGGG
CGGGCGTGCATGAAGGCCTGGGGCACGATCATCGGCGGCGCGGCGGCGGC
GGAGGTGCAGCGGCGAGGACGTCTCAGCAGATGCTGGCGCAGCAGTACCA
GCAGTCTCGTGACACGGGCGGCGGCGGCGGCGGCACCAAGTGGTCGCCCG
CTACATCTACTTGTACAGGCGTGGGTGTCGAGTCATTGCAGTCCCCGGTC
CGCATCCGTCGGTCCGTTGTTCCCACGGCGGCGGCGGCAGCAAGCAGCGT
CATCGGCACCGGGTCCAGGAGGTTGTCGAGGGCAGCAGAGGGACAGCAGC
GGCAGCACCAGCACCGTGGCGGCGCTGCCAACAGAGGAGGAGGGGCTAGG
TGGGGGTTGGGGTCGCGGCGCTCTGGTCTCGTAGACGGGGCCGGTGCGGC
GGCTGGCGGGGAGCAGTACCGTCACCATCAACACCCCCACCAGCAGCAAC
AGGACCAGTATCATCAGCAACCTCAGCACCCACACCACTATCATCATCAG
CAGCAGCAGAGCGGAGATGGGTGGTGCGCGAAAGCCACCGGCCTGCGCGA
CGTGGAGGATAGGTTTCATCAACTCAAGTTCGGGAGGGCGAGGGCCAGGA
ACGCCGGGCGGCGGTCCCACGACGACATGCCGGACCCCACAGCTGGTATG
AGGGCACCCAAGCGCTGA
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