mRNA_Ecto-sp13_S_contig11523.1333.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11523.1333.1
Unique NamemRNA_Ecto-sp13_S_contig11523.1333.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11523.1333.1 vs. uniprot
Match: D7FWF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.910e-22
Identity = 58/70 (82.86%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:  114 KRDQAEEQVNTAAGGSGHHEPLVPDDGGGAVSGPGLPQGGPQTGTVQATAGLMAQGGSDGGGCGMWITRR 323
            KRD+AE QVNTAA  SGHHEPLVPD GGGAVSGPGLPQGGPQT TVQATA LM QGGSDG GCG  I RR
Sbjct:    2 KRDEAEGQVNTAASDSGHHEPLVPD-GGGAVSGPGLPQGGPQTETVQATAELMVQGGSDGVGCGRSIARR 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11523.1333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWF6_ECTSI1.910e-2282.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11523contigEcto-sp13_S_contig11523:1321..3456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size325
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462605.0178573-CDS-Ecto-sp13_S_contig11523:1320..14721681462605.0178573-CDS-Ecto-sp13_S_contig11523:1320..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11523 1321..1472 -
1681462605.0260205-CDS-Ecto-sp13_S_contig11523:2098..21561681462605.0260205-CDS-Ecto-sp13_S_contig11523:2098..2156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11523 2099..2156 -
1681462605.034003-CDS-Ecto-sp13_S_contig11523:3343..33821681462605.034003-CDS-Ecto-sp13_S_contig11523:3343..3382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11523 3344..3382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462605.0422463-UTR-Ecto-sp13_S_contig11523:3382..34561681462605.0422463-UTR-Ecto-sp13_S_contig11523:3382..3456Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11523 3383..3456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11523.1333.1prot_Ecto-sp13_S_contig11523.1333.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11523 1321..3382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11523.1333.1

>prot_Ecto-sp13_S_contig11523.1333.1 ID=prot_Ecto-sp13_S_contig11523.1333.1|Name=mRNA_Ecto-sp13_S_contig11523.1333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MPAHEGDEDIPLEKRDQAEEQVNTAAGGSGHHEPLVPDDGGGAVSGPGLP
QGGPQTGTVQATAGLMAQGGSDGGGCGMWITRR
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mRNA from alignment at Ecto-sp13_S_contig11523:1321..3456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11523.1333.1 ID=mRNA_Ecto-sp13_S_contig11523.1333.1|Name=mRNA_Ecto-sp13_S_contig11523.1333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11523:1321..3456- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGATCAAACCACACAGCAAACAAGAGCGAGGCTGACTGGATCACAGC
AGGAGACGAAAGCTGGAGAAGAGGATGCCCGCGCACGAGGGAGACGAAGA
TATACCGCTGGAGGTGGGATACACCCAGGGTGTTTCGGGCAGGAAGTCTG
GACTTCTTTTTGAAAAATAAAGTCAAGTCCTTTTTGAACCGCCCGATACC
GCTGTGTGGTGTCGTCCGTGGTTCATCTCACATACTTCCCGTGCTTTCGC
CGAGTTTGCGATGTGTGCAATAGACCGCATGTATCAATGGAGAACACGTA
GTAGTGGTGTTCCGCCTGGTAGAGCACCTATTCTATGAGTTAAGCTCAAG
GCCTCACAGCAGTGTTGCTTGTACCGTTGCAGTCTATGGCGGTAGACGAG
GCATTTTTTTGTGGAACTGCAGTCTATGCCGCAGTTGATCCCAGCCTTGG
CACGACATCAACGACTCGAAGGAAGCTTTTATCCATCAGACCAAGAGCAG
TAGATTTAGAGTAGTACCGACGGATGGGTGCAATTTCTTGATCAGTTTTT
TTCGTGAGGCGGCCGGGCACTGCGGTGCCTGTTTCGTTATTTTCGCGGTT
TCCCGGCAAATTACAGTACTCCTCTACAAGTCTGGATCCAACGAAGACTT
GCGTCGATCGGGGGTATCGCTGTATAGTACTCGCCTACGCTGTGCCTGCA
ACGTTCTTCGATCTTGGGCCCAGTTTTGCTTAGACCATTGTGTCCGTACG
TCGCACAGCAAATCCTCCTATGGTCTGTTGTGTATTTTCCGCACTTGTGC
TTTCGCGCCACTACTGCCGTGAGTAATAGATGGGACCACGCATAGGAACA
CTTAAAGATACCAGTTGGGTGCAAGTCGCTCGTCTCCCTGCAAGCCCAAG
AGTACGTCGGTGTGAGCCTGTTTCTGGTGTAAATATGAGTCTATGCTGAA
CGGTCGATGATTTACCGGAAATCAATTCCCACATACAAGCGGTCGCCAAG
CACTGGTAGAAGAGTAAATGCGGCTAATCCATGTTTGATCTGTGTGCGCC
GGCCGCCTTATCCTTGAGGGTTGCAACCGGCCACGACGAGGTGCGGTGTT
CCTTGAACCGCTCCTAGCCTAGTCGCTGATATGATACGCGGAACGTGCCA
CGTTATTTTCCTCACAAAGAAATATTCCTGAACTTTGGCGTCTCTCGCTC
TCGCTCTCGCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCCCTTTGTC
GGCCATCTTGTTGTTGCCTCATGTTTGACACGACCATGGTACTATTGTAG
AAGCGAGACCAAGCGGAGGAACAGGTCAACACTGCAGCAGGCGGCAGCGG
ACACCACGGTGAGATTGAAGCCCCCGTGCTCACGGATGCCTCACGCGCGT
TGGACATTGGAGTCACCACTTTTCGCCCATTTCTTCTTCCAAGTCACACA
CATCTTCTCCTGCATATACTCGATTTTTAACTTGATTCAGGCCTTCGGCT
GTTGCAACAGTTCCTACATGTATCAACATACCTCTTTCAAGCAAGGGAAG
TACTGCTGTACGCGACATCCAAAGGGTTTCGCCCACGCTGCATGTTTGAC
TCCTACAGGAAACAAGCCGCAGCATCACTTTCAAGAAATCGGACGAAAAC
ACGAAAGCGTGCTGATACGGTACAACTGCATGGCAATTACACGCTCGCTC
CTGAAAATTCGGAACTCTCGACTTTGTTTGACATGTCGTTCAATCGCTCT
CCCACGGCAGCAGTCGCGGCATCTATTAGCAGCTGTAGACATTCCCCCGT
TCGCAAAGTTCCATGCAACTGTTTTGATGTGCGGGCAAATCACCTCGCCG
CCGTCGCTCGATATGGATATGTCGGCATGTCGCGGATCCCGATCGCCCAA
CGTGCGTCACCCCCTGACCCCTTCCTCACCATGGTCACGGCCACACACGT
ACCGTTCGGGAATCATCCCTCCCACAACCATCAGAACCTCTCGTGCCTGA
TGACGGAGGAGGGGCTGTTTCAGGTCCTGGCCTGCCTCAGGGAGGTCCAC
AGACTGGGACCGTCCAAGCGACGGCCGGGTTGATGGCACAGGGCGGCAGC
GATGGCGGCGGCTGTGGGATGTGGATCACCAGGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11523:1321..3456-

>mRNA_Ecto-sp13_S_contig11523.1333.1 ID=mRNA_Ecto-sp13_S_contig11523.1333.1|Name=mRNA_Ecto-sp13_S_contig11523.1333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11523:1321..3456- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGCGCACGAGGGAGACGAAGATATACCGCTGGAGAAGCGAGACCA
AGCGGAGGAACAGGTCAACACTGCAGCAGGCGGCAGCGGACACCACGAAC
CTCTCGTGCCTGATGACGGAGGAGGGGCTGTTTCAGGTCCTGGCCTGCCT
CAGGGAGGTCCACAGACTGGGACCGTCCAAGCGACGGCCGGGTTGATGGC
ACAGGGCGGCAGCGATGGCGGCGGCTGTGGGATGTGGATCACCAGGCGT
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