mRNA_Ecto-sp13_S_contig11517.1328.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11517.1328.1
Unique NamemRNA_Ecto-sp13_S_contig11517.1328.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11517.1328.1 vs. uniprot
Match: A0A6H5JV39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV39_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 3.110e-110
Identity = 212/264 (80.30%), Postives = 217/264 (82.20%), Query Frame = -3 
Query:  356 GGVGGGQATITGPAVAVAEPSPGNGSGGVAGTAAAAAPSLDTVAAAVQRSGSAACCPELGGQPPACEPAARKMGSPLESAGGCDNHAPPPPRRPVKVAPAVLALLTKQHSARAIADAGAEESSAKARLKEKGSVAPAPFAVAATAAGSERPSAETSSAGVAAAVPVAPSAKPMSKTLAALLARRADRPTPSGPAAGGGCNGDENEAIKKATSPPLGFLGELKARAAAAAKGAGTG--PEREGKAALPTGGSFLDELKARTARIS 1141
            GGVGGGQATITGPAVA  EPSP  GSGGVAGT AAAAPSLD VAAAV+RSG AACCPELG Q  ACEPAARKMGS LE AGGCD+HAPPPPRRPVKVAPAVLALLTKQHSARA A AGA ES  +AR K KGS AP  F     AAGSE PSAE  SAG  AAVPVAPSAKPMSKTLAALLARRADRPTPSGPAAGGG +GDENEA KKAT PPLGFLGELKARA            PEREGKAALPTGGSFLDELKA+TARIS
Sbjct:  227 GGVGGGQATITGPAVA--EPSPATGSGGVAGTGAAAAPSLDPVAAAVERSGPAACCPELGAQANACEPAARKMGSSLELAGGCDSHAPPPPRRPVKVAPAVLALLTKQHSARATAAAGARES-LEARPKGKGSAAPXXFXXXXXAAGSECPSAEIPSAGARAAVPVAPSAKPMSKTLAALLARRADRPTPSGPAAGGGFDGDENEARKKATCPPLGFLGELKARAXXXXXXXXXXXXPEREGKAALPTGGSFLDELKAKTARIS 487
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BLAST of mRNA_Ecto-sp13_S_contig11517.1328.1 vs. uniprot
Match: D7FRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP3_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 6.650e-37
Identity = 86/99 (86.87%), Postives = 87/99 (87.88%), Query Frame = -3 
Query:  356 PVAPSAKPMSKTLAALLARRADRPTPSGPAAGGGCNGDENEAIKKATSPPLGFLGELKARAAAAAKGAGT-GPEREGKAALPTGGSFLDELKARTARIS 649
            PVAPSAKPMSKTLAALLARRADRP PSGPA GGGC+GDENEA KKATSPPLGFLGELKARAA         GPEREGKAALPTGGSFLDELKARTARIS
Sbjct: 1297 PVAPSAKPMSKTLAALLARRADRPPPSGPAGGGGCDGDENEARKKATSPPLGFLGELKARAAXXXXXXXXXGPEREGKAALPTGGSFLDELKARTARIS 1395
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11517.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV39_9PHAE3.110e-11080.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRP3_ECTSI6.650e-3786.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11517contigEcto-sp13_S_contig11517:3167..4309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1143
Hectar predicted targeting categoryother localisation
Exons1
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462604.5631132-UTR-Ecto-sp13_S_contig11517:3166..35011681462604.5631132-UTR-Ecto-sp13_S_contig11517:3166..3501Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11517 3167..3501 +
1681462604.5800583-UTR-Ecto-sp13_S_contig11517:4125..43091681462604.5800583-UTR-Ecto-sp13_S_contig11517:4125..4309Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11517 4126..4309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462604.5717547-CDS-Ecto-sp13_S_contig11517:3501..41251681462604.5717547-CDS-Ecto-sp13_S_contig11517:3501..4125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11517 3502..4125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11517.1328.1prot_Ecto-sp13_S_contig11517.1328.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11517 3502..4125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11517.1328.1

>prot_Ecto-sp13_S_contig11517.1328.1 ID=prot_Ecto-sp13_S_contig11517.1328.1|Name=mRNA_Ecto-sp13_S_contig11517.1328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MCARGAQEILAVLAFSSSKKEPPVGKAAFPSRSGPVPAPFAAAAALAFSS
PKNPSGGEVAFLIASFSSPLQPPPAAGPDGVGLSALRASRAARVFDIGFA
DGATGTAAATPAEEVSADGRSDPAAVAATANGAGATDPFSFSLAFADDSS
APASAMARALCCLVRSASTAGATFTGRRGGGGAWLSHPPADSRGEPIFLA
AGSHAGG*
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mRNA from alignment at Ecto-sp13_S_contig11517:3167..4309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11517.1328.1 ID=mRNA_Ecto-sp13_S_contig11517.1328.1|Name=mRNA_Ecto-sp13_S_contig11517.1328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11517:3167..4309+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGTCACTTACTGCTGTGACGAGAAACCATGATTTATCTGGGCATTTA
TCTAGAGGGAGGGAACACCCCTCCCACACTCCCACCCCTGCGCCGCTTGG
CTCCTGGCCCGGTGATTTCCGGCTGTAATCCCGATAACACCTCTTCTATG
AGCTCGCGGCAAAAGGAAAGCAAGTATGAAAAGCACCGAATCTGACACTG
CGTACTCGAAGGAGTACAGGCGACCCTGGTGGCCGTAAAAGAATAAATAG
AAATAATAGAAAAACAACCCGGACGGAATATCCTCGAAATGAGTATGTCT
CAAGGGACTGGAAACCCCGCGGGCACTTGACCCCCATGTGCGCTCGCGGG
GCTCAGGAAATCCTTGCGGTCCTGGCCTTCAGCTCGTCCAAAAAAGAGCC
TCCCGTGGGCAAGGCCGCCTTCCCCTCCCGCTCAGGGCCCGTCCCCGCGC
CCTTCGCCGCCGCCGCCGCCCTCGCCTTCAGCTCGCCCAAGAACCCAAGC
GGTGGAGAGGTCGCCTTCTTGATCGCCTCGTTTTCGTCGCCGTTGCAGCC
GCCGCCCGCGGCAGGGCCTGACGGCGTCGGTCTATCAGCCCTCCGCGCGA
GCAGGGCTGCCAGGGTTTTCGACATCGGCTTTGCAGATGGAGCGACCGGC
ACTGCCGCCGCCACCCCCGCCGAAGAGGTTTCAGCAGACGGACGCTCCGA
CCCCGCCGCCGTCGCCGCCACAGCGAACGGTGCTGGTGCCACTGACCCTT
TTTCCTTCAGCCTAGCCTTCGCGGACGACTCCTCCGCTCCTGCGTCAGCA
ATGGCGCGGGCGCTGTGCTGCTTGGTGAGGAGCGCGAGCACCGCCGGTGC
GACCTTCACCGGCCGGCGAGGCGGCGGAGGGGCGTGGTTGTCGCACCCAC
CGGCCGACTCTAGAGGCGAACCCATCTTCCTCGCCGCCGGCTCACACGCG
GGTGGTTGACCCCCAAGTTCCGGACAACACGCCGCTGACCCGGACCGCTG
GACAGCAGCGGCGACGGTGTCGAGCGACGGGGCCGCCGCCGCAGCGGTCC
CGGCAACGCCGCCGCTGCCGTTGCCCGGCGATGGTTCGGCGACGGCAACA
GCGGGTCCGGTTATTGTTGCCTGCCCGCCGCCGACGCCTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11517:3167..4309+

>mRNA_Ecto-sp13_S_contig11517.1328.1 ID=mRNA_Ecto-sp13_S_contig11517.1328.1|Name=mRNA_Ecto-sp13_S_contig11517.1328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11517:3167..4309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCTCGCGGGGCTCAGGAAATCCTTGCGGTCCTGGCCTTCAGCTC
GTCCAAAAAAGAGCCTCCCGTGGGCAAGGCCGCCTTCCCCTCCCGCTCAG
GGCCCGTCCCCGCGCCCTTCGCCGCCGCCGCCGCCCTCGCCTTCAGCTCG
CCCAAGAACCCAAGCGGTGGAGAGGTCGCCTTCTTGATCGCCTCGTTTTC
GTCGCCGTTGCAGCCGCCGCCCGCGGCAGGGCCTGACGGCGTCGGTCTAT
CAGCCCTCCGCGCGAGCAGGGCTGCCAGGGTTTTCGACATCGGCTTTGCA
GATGGAGCGACCGGCACTGCCGCCGCCACCCCCGCCGAAGAGGTTTCAGC
AGACGGACGCTCCGACCCCGCCGCCGTCGCCGCCACAGCGAACGGTGCTG
GTGCCACTGACCCTTTTTCCTTCAGCCTAGCCTTCGCGGACGACTCCTCC
GCTCCTGCGTCAGCAATGGCGCGGGCGCTGTGCTGCTTGGTGAGGAGCGC
GAGCACCGCCGGTGCGACCTTCACCGGCCGGCGAGGCGGCGGAGGGGCGT
GGTTGTCGCACCCACCGGCCGACTCTAGAGGCGAACCCATCTTCCTCGCC
GCCGGCTCACACGCGGGTGGTTGA
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