mRNA_Ecto-sp13_S_contig11510.1325.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11510.1325.1
Unique NamemRNA_Ecto-sp13_S_contig11510.1325.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: D7FGQ9_ECTSI (Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ9_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 2.640e-119
Identity = 181/216 (83.80%), Postives = 189/216 (87.50%), Query Frame = 1 
Query:    1 LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVGLTTVLVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHDALYGGXXXXXXXXXXXXXXXXXXXGVRASNHVDSSRKVR 648
            ++ L+L   YLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGC+NTGHGMPSNHSQYMFFFA FVSLYLWGRVS+SAEAKVGLT+VL GWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLY KVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHDALYG                    GVRAS+HVD+SRKVR
Sbjct:   30 MALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCINTGHGMPSNHSQYMFFFASFVSLYLWGRVSFSAEAKVGLTSVLAGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYSKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHDALYGDGGGETVFTGSSSRG-----GVRASDHVDASRKVR 240
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: A0A068UDW3_COFCA (acidPPc domain-containing protein n=2 Tax=Coffea TaxID=13442 RepID=A0A068UDW3_COFCA)

HSP 1 Score: 114 bits (285), Expect = 8.520e-28
Identity = 65/162 (40.12%), Postives = 96/162 (59.26%), Query Frame = 1 
Query:   64 RRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGC----VNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVGLTTVLVGWAASVA--YSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHD 531
            RR+LQV   A G L+   VN+ +KT + +ARP  C    +   HG PS+HSQYMFFFA++++L  + R+   A  ++ +  +LV W +++   YSR+ L  HT+ QV  GAA+GT  GGLW+ +    L    P + +    R  YVKD S + NVL FE++
Sbjct:   52 RRELQVMFFAFGLLISQFVNEVIKTSVQQARPETCALLEICDSHGWPSSHSQYMFFFALYLTLLTYKRIGILARNQMSVVLLLV-WPSAILTMYSRVYLGYHTVAQVLAGAALGTFLGGLWFWVVNSGLRSFFPVIEESAFGRFFYVKDTSHIPNVLKFEYE 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: A0A182FQ63_ANOAL (Dolichyldiphosphatase n=6 Tax=Nyssorhynchus TaxID=44543 RepID=A0A182FQ63_ANOAL)

HSP 1 Score: 113 bits (283), Expect = 3.170e-27
Identity = 72/189 (38.10%), Postives = 107/189 (56.61%), Query Frame = 1 
Query:    1 LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCVN--TGHGMPSNHSQYMFFFAIFVSLYLWGRVSY---SAEAK----VGLTTVLVGWAAS--VAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHDA 534
            L+ +SL    +   ++ L++ RRDL   V   G LV+  +N  LK WI E RP         +GMPS+HSQ+M FFA +V L+++ R+ +   S+ A+    V L  + + W A+  V + R+ L  HT++QV +GA +GT TGGLW+ L   VL P  P V  W IS    ++D + + NVL FE+ A
Sbjct:   48 LAWISLAPLGIGAGFVALILFRRDLHTIVFFAGTLVNESINMILKHWIQEPRPVSRAQIWNEYGMPSSHSQFMCFFATYVLLFIFIRLHHMNNSSSARIERIVRLLMLAICWVAAFLVCFGRVYLLYHTVRQVTIGALIGTVTGGLWFALTHCVLTPYFPMVVTWRISELFLLRDTTLIPNVLWFEYTA 236
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: A0A672IA22_SALFA (Dolichyldiphosphatase n=33 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672IA22_SALFA)

HSP 1 Score: 112 bits (281), Expect = 4.330e-27
Identity = 72/187 (38.50%), Postives = 108/187 (57.75%), Query Frame = 1 
Query:    1 LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARP-PGCVNTGH---GMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVG-------LTTVLVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEH 528
            L+ +SL   ++ V ++TL+V +R+L       G +++  VN  LK  + E RP  G   T H   GMPSNHSQ ++FF ++  L+L+ R+  +  A+         L+ +L+G A SV+YSR+ L  HT  QV  GA  G+T G +W+    +VL PL PR+A WPIS    V+D S + N+L FE+
Sbjct:   33 LAYISLLPVFILVGFVTLIVFKRELHTISFFGGLILNDGVNWVLKNILREPRPCAGAHTTVHNEYGMPSNHSQLIWFFVVYFFLFLYLRMHQTNNARCVDLLWRHILSIILLGMALSVSYSRVYLLYHTWSQVFYGAVAGSTFGIIWFFFTQEVLTPLFPRIAAWPISEYFLVRDTSLIPNILWFEY 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: A0A507DTY7_9FUNG (Dolichyldiphosphatase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DTY7_9FUNG)

HSP 1 Score: 112 bits (279), Expect = 6.440e-27
Identity = 70/178 (39.33%), Postives = 106/178 (59.55%), Query Frame = 1 
Query:    1 LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYS-AEAKVGLTTVLVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHD 531
            ++ +SL    L ++Y+TL+  RRDL   ++ +G LV+  VN   K  + +ARP   +  G+GMPS+HSQ++ FFA +V++Y   R+ +  A  K  +    +  AA VAYSR+ L  HT KQV VG   GT   GLW+LL   VL+P +      PI+R L +KD S++  +L FE++
Sbjct:   32 MAYISLAPLALIISYVTLIAFRRDLATCLMLIGQLVNEGVNFVAKKIVRQARPTEYLGNGYGMPSSHSQFVAFFAAYVTIYTIRRLHFRHAVWKPLICAACILMAALVAYSRIRLSYHTPKQVIVGLTCGTIFAGLWFLLCDNVLIPAVD--LDHPIARWLLLKDTSRIPTILVFEYE 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: UPI0014711AE0 (dolichyldiphosphatase 1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014711AE0)

HSP 1 Score: 112 bits (279), Expect = 8.360e-27
Identity = 69/186 (37.10%), Postives = 108/186 (58.06%), Query Frame = 1 
Query:    1 LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPG---CVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVG-------LTTVLVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEH 528
            L+ +SL    + V ++TL+V +R+L       G L++  VN  LK  + E RP      V+T +GMPSNHSQ ++FF ++  L+L+ R+  +  A+         L+ VL+G A SV+YSR+ L  HT  QV  G   G+T G +W+ +  ++L PL P++A WP+S    V+D S + N+L FE+
Sbjct:   33 LAYISLLPIAILVGFVTLIVFKRELHTISFFAGVLLNEGVNWLLKNIVREPRPCAGIHSVHTDYGMPSNHSQLIWFFVVYFFLFLYLRMHQTNNARCVDLLWRHILSIVLLGLAISVSYSRVYLLYHTWGQVLYGGVAGSTFGIIWFFITQELLTPLFPKIAAWPVSEYFLVRDTSLIPNILWFEY 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: K3X1C3_GLOUD (Dolichyldiphosphatase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1C3_GLOUD)

HSP 1 Score: 111 bits (277), Expect = 1.050e-26
Identity = 63/168 (37.50%), Postives = 101/168 (60.12%), Query Frame = 1 
Query:   28 YLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVGLTTV-LVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEH 528
            ++ V Y TLVV +RDL + ++ VG L++ V N+ LK  I ++RP G   +G GMPS HSQ++FFFA +V  Y W R++     +  LT V  +  A  V  SR+ L  H+ +QVAVGA VG  +G  W+ L  K    L P + +  +++  Y++D S++ +++ ++H
Sbjct:   39 FIMVMYATLVVFQRDLDIIMMLVGQLLNEVANQILKRSIQQSRPEGARMSGSGMPSAHSQFIFFFAAYVVAYTWKRLNTHRRLEQSLTIVGAIVLAVVVCVSRIRLGYHSKEQVAVGALVGALSGLAWHGLVAKTSPWLFPLITESALAQFFYIRDISRIPDLIVYQH 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: A0A0L0H732_SPIPD (Dolichyldiphosphatase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H732_SPIPD)

HSP 1 Score: 110 bits (275), Expect = 2.520e-26
Identity = 66/168 (39.29%), Postives = 101/168 (60.12%), Query Frame = 1 
Query:   31 LAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEA-KVGLTTVLVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHD 531
            L V+Y TL+  RRDL   ++ +G LV+  VN A K  I EARP   +  G+GMPS+HSQ++ FFAI++++Y   R+++   A K+ ++  +   A  VAYSR+ L  HT KQVAVG  VGT    +W+LL   V +  +      P++R   ++D   + N+L FE++
Sbjct:   42 LLVSYCTLIAFRRDLATCLMFLGQLVNEAVNYAAKKIIKEARPTEYLGKGYGMPSSHSQFVAFFAIYITIYTVKRLNFRHTAWKILISATVFALAGLVAYSRIHLTYHTPKQVAVGLLVGTCFAFIWFLLVENVFVSAID--LDTPVARWFLLRDTRSIPNILVFEYE 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: UPI0003F06086 (dolichyldiphosphatase 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06086)

HSP 1 Score: 110 bits (276), Expect = 2.660e-26
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 1 
Query:   28 YLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARP---PGCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVGLT------TVLVGW---AASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEH 528
            ++ V+++TL+  RR+L       G LV+ +VN  LK  I + RP      V + +GMPSNHSQ+M+FF +++ L+++ R+ YS  +   L        V VG    AA V YSR+ L  HT +QV  GA VG+    LW++    VL PL P V  WP+S  L ++D + + NVL FE+
Sbjct:   50 FIIVSFVTLIAFRRELHTITFFGGLLVNEIVNWVLKNIIRQPRPCREHEVVFSEYGMPSNHSQFMWFFGVYLVLFVYIRIQYSTSSTCSLVDLAWKHVVAVGALLVAAIVTYSRVYLHYHTNRQVYSGAVVGSLVAVLWFIFTQLVLTPLFPVVVSWPLSERLMLRDSTLIPNVLWFEY 228
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Match: A0A8J4ZRX1_9CHEL (Dolichyldiphosphatase n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4ZRX1_9CHEL)

HSP 1 Score: 110 bits (276), Expect = 3.050e-26
Identity = 66/187 (35.29%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:    1 LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPP---GCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSY--------SAEAKVGLTTVLVGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEH 528
            L+  SL    + V+++TL++ RRDL       G++++ +++  LK  I + RP    G + T +GMPS+HSQ+M+FFAI+ SL++  R+ +        +A   + + T ++G A +V+YSR+ L+ HT +QV  GA +G     LW+ L    L P  P +A WP+     +KD S +SNV+ FE+
Sbjct:   44 LALASLSPLVILVSFVTLIIFRRDLHTICFLSGNVINEIISLILKYTIRQPRPTLSKGILYTEYGMPSSHSQFMWFFAIYFSLFILIRLHHHNSSNPLDNAWKYISVLTFVIG-AITVSYSRVYLEYHTTRQVIWGAVIGAIFAILWFFLIHFSLSPFFPMIASWPVCELFMIKDMSLISNVMWFEY 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11510.1325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGQ9_ECTSI2.640e-11983.80Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculos... [more]
A0A068UDW3_COFCA8.520e-2840.12acidPPc domain-containing protein n=2 Tax=Coffea T... [more]
A0A182FQ63_ANOAL3.170e-2738.10Dolichyldiphosphatase n=6 Tax=Nyssorhynchus TaxID=... [more]
A0A672IA22_SALFA4.330e-2738.50Dolichyldiphosphatase n=33 Tax=Percomorphaceae Tax... [more]
A0A507DTY7_9FUNG6.440e-2739.33Dolichyldiphosphatase n=1 Tax=Powellomyces hirtus ... [more]
UPI0014711AE08.360e-2737.10dolichyldiphosphatase 1 n=1 Tax=Thalassophryne ama... [more]
K3X1C3_GLOUD1.050e-2637.50Dolichyldiphosphatase n=1 Tax=Globisporangium ulti... [more]
A0A0L0H732_SPIPD2.520e-2639.29Dolichyldiphosphatase n=2 Tax=Spizellomyces TaxID=... [more]
UPI0003F060862.660e-2638.55dolichyldiphosphatase 1-like n=1 Tax=Saccoglossus ... [more]
A0A8J4ZRX1_9CHEL3.050e-2635.29Dolichyldiphosphatase n=1 Tax=Nymphon striatum Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11510contigEcto-sp13_S_contig11510:270..5104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score344.0
Seed ortholog evalue5.2e-92
Seed eggNOG ortholog2880.D7FGQ9
Preferred nameDOLPP1
Model size651
KEGG rclassRC00002,RC00004,RC00014,RC00141
KEGG koko:K01074,ko:K07252,ko:K08658
KEGG ReactionR01004,R01274,R09845
KEGG Pathwayko00062,ko00510,ko00900,ko01100,ko01130,ko01212,ko04142,map00062,map00510,map00900,map01100,map01130,map01212,map04142
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0002084,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006638,GO:0006639,GO:0006643,GO:0006644,GO:0006651,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008152,GO:0008195,GO:0008474,GO:0008610,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016790,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0019637,GO:0019725,GO:0022414,GO:0030003,GO:0030004,GO:0030148,GO:0030163,GO:0030176,GO:0030641,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042175,GO:0042578,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045017,GO:0045851,GO:0046339,GO:0046460,GO:0046463,GO:0046465,GO:0046467,GO:0046486,GO:0047874,GO:0048856,GO:0048868,GO:0048878,GO:0050801,GO:0051452,GO:0051453,GO:0051704,GO:0055067,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070085,GO:0071704,GO:0090407,GO:0098599,GO:0098732,GO:0098734,GO:0098771,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576
Exons6
EggNOG free text desc.dolichyldiphosphatase activity
EggNOG OGsCOG0671@1,KOG3146@2759
Ec32 ortholog descriptiondolichyldiphosphatase
Ec32 orthologEc-04_001210.1
EC3.1.2.22,3.6.1.43
Cds size651
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11510.1325.1prot_Ecto-sp13_S_contig11510.1325.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11510 270..5104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462604.390837-CDS-Ecto-sp13_S_contig11510:269..4191681462604.390837-CDS-Ecto-sp13_S_contig11510:269..419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11510 270..419 -
1681462604.4044125-CDS-Ecto-sp13_S_contig11510:831..9061681462604.4044125-CDS-Ecto-sp13_S_contig11510:831..906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11510 832..906 -
1681462604.4149191-CDS-Ecto-sp13_S_contig11510:1434..15281681462604.4149191-CDS-Ecto-sp13_S_contig11510:1434..1528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11510 1435..1528 -
1681462604.4235375-CDS-Ecto-sp13_S_contig11510:2614..26921681462604.4235375-CDS-Ecto-sp13_S_contig11510:2614..2692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11510 2615..2692 -
1681462604.4328516-CDS-Ecto-sp13_S_contig11510:3909..40001681462604.4328516-CDS-Ecto-sp13_S_contig11510:3909..4000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11510 3910..4000 -
1681462604.4414318-CDS-Ecto-sp13_S_contig11510:4941..51041681462604.4414318-CDS-Ecto-sp13_S_contig11510:4941..5104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11510 4942..5104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11510.1325.1

>prot_Ecto-sp13_S_contig11510.1325.1 ID=prot_Ecto-sp13_S_contig11510.1325.1|Name=mRNA_Ecto-sp13_S_contig11510.1325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
LSRLSLPFRYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAE
ARPPGCVNTGHGMPSNHSQYMFFFAIFVSLYLWGRVSYSAEAKVGLTTVL
VGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYLKVLLPLLPR
VAKWPISRALYVKDYSQVSNVLAFEHDALYGGGGGGGGGEAVATGSSSSS
GGVRASNHVDSSRKVR*
back to top

mRNA from alignment at Ecto-sp13_S_contig11510:270..5104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11510.1325.1 ID=mRNA_Ecto-sp13_S_contig11510.1325.1|Name=mRNA_Ecto-sp13_S_contig11510.1325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11510:270..5104- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCACGACTGTCGTTGCCCTTCAGATACCTGGCCGTAGCGTATATGAC
CCTTGTGGTGGTGCGGCGGGACCTCCAGGTGTTCGTCCTCGCCGTGGGGC
ATCTGGTAGACCTCGTCGTCAACAAGGCCCTCAAGACTTGGATCGCTGAG
GCGAGACCGCCAGGTGCGGCAAGGAGCAGTTGCAGCCTCCGCAGGATTTT
TCGATTAAGTAAACATGTTGGATAAAGCATGCGACAGGGGAAGTAGGGTT
AGGGTTATAGGGGGATAGGGCCTGCGTAACCGCTTTTCCTGTTCTACTTC
CTCCCAAACGTATAAATCGCGAAAGCGGTCCGCTCCAAGGCAGCTTTCCG
CAGTAGGGACCAACGAGTGCCCGCAGCACTCTTGGGGTACAGCTAGAGCG
CTCAACAACTTGGCCATAAAGAAGTTGATGAGGCCTCGAAGAACTCATCA
TGTCAGAACTTGAGCACCAAGCGTGAGCTCGGTTACCAGCCTTGTCTTGT
GCAATGGTAGGGAGTCGGCGTAAATCATGGTATTCGCCCCACTCTACTGC
TTACACTTACAACCTACATACCGGCCATTCGTCGCATGACCATAAGAACT
TAGAACCCAAGCGTCGGTCAAAAACTAGAGGTTCTGCAGTGCGGGCGCCT
ACTGTATCGCCTGCGGAGTTTGAACGGAGGCTACCTTTTGAAATGCGTAT
TGGTGAACGGCATTTGGCAGCATTGACGCATCACCTGCGGAGTTTCGAGC
TGAGGCTACCGTTGCTAAAACTATGCAAACATGCGGTTTGATTAACCACA
TTTATTTGCGTTTGAGACAAGCAAATGGCCACATGATTTAAAGAAAAAAA
TGCATGGAAAAACGAGGGAATATGCACTCTATACAAAGAAGCTGCCAAGC
GTCGGGCTCTCAAAGTCATTGAGGCGTCAAGACGTGGTTTGTGGAAGTGG
CCACACAAAGGACCTTCTGGTCGGCGGTTGGGGTGAGCGCAGTTTCCACC
CAGAGAGTGTTTCATTGTTGTCGCATACATACCTAGCAGCGTATGCTTGT
ATGAACGGGATCCACCCTCTCCCTGCCCCTCTCCGACCCCTAATCTACGT
ACAGGCTGCGTCAACACAGGCCACGGGATGCCTTCTAATCACTCCCAGTA
CATGTTCTTCTTCGCCATCTTCGTGTCGCTGTACCTGTGGGGCAGGTGAG
ACGCCCTTTTTCTCGGAAAAAGACTGGTCTTACTCGTTTCTACGACCACT
GCAAACTAGCCGCTACGTGCACTCTGAGGGAAATCCCCCAACTCGTACCC
AAGTTGGTCGGATATTCGTCTTTCGCAAAGCATGCTTCAGAGAGAGAGCT
GTTTTGTTCGGGGGGGGGGGGGTACTCAGAGTCGTACATGCCGTAGCCCG
TAAAGACCGTTGACCTCGCATCCCTACAAAGCCTGGACGGAGCACACCGG
GTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGGAGCGCCGTGAGG
TATTCGGCGAGTCGCATAAAGGGTGCGCTGCATCTTGCTAAGGATGTTCG
GCATCTCGTGCGTACTTCCTTGCGTAAGGATGACAGCTGTGTATGATTTC
GTTTGTTTTCTGGTGCATTTACTTCCAGAGACAGTTATAAGCATAACAAC
CTCGACGATGCTTGAACATTTTAACACAACGTGGTGCGATCATCCCCCTT
GCGCGGAGTGAGGGTCCTCGAACCCGCACAAGATGATCTACTCGACCACC
ACTACGGCTACCGCAAAAAAATAACAGAGTAGAGAACAGAAACGGTAACC
TGGTTGCCGACTTCAAGAAGTGAATTGGCTTGGTGTACAACGTCGTTGGC
AAGCGACGAAAACCCAACCCCAATGTCGGGGGCGGGGCGTATTTTTAATA
AGATATTCGGAGGTGCATACCCAATTACGAAGAACACCAGGCGGCATTGT
GGCCTGGCGCATTGTCCTTCCCAGAGAATTCCATACTCAAAGGGCATCGT
TCATGAGCTTGGTCCTTCAGCTCGCGTTGGCTACTTCGCTGACCACATGA
CATTTCCAAGATAGAAAAAATGATGCGTCTTCGACCCACAGACCCGTCCT
CCACATACTCCAGCGACCACAATTGATCTGAAGTACCCCTACCCGCTGCT
CTTGCTCGCTACGCGTGCTTTCGAGCCCGCGGCGGAAAGAGTGAGAGCAT
GAACTGGGGAAGAGTGAGAGCCCGCGGCGGGAAGAGTAAGGGCATGGGCT
AGACCGGAACATAGAGAAATTCCGAGCACAAAGTGTAAAGATGCACCTTT
CACGCCGCGCGAGGGGGCGATGAGCACCTAGAGATATATCAACCGAACAT
CACAAGGCTGACTCCGCTCCTGGGGCCCCGTGCATCGTTTCCGGTGCCCC
CCTCCCCGGTAGGGTTTCCTATTCGGCGGAGGCGAAGGTCGGTTTGACGA
CCGTCCTGGTCGGCTGGGCGGCGTCGGTGGCGTACTCGAGGTGAGCTTTG
GTGCTGTGTCAAGCCCATCGGGTGTCAACTGAATCGCGTCGTCAGGTGTG
TTCATTTTTTTTTTGTTTAGCGCCATGGGTATGTGTAAGGGGGTCTTGCA
TACAACCATGGCGTAGTCTCGGTGGGTGAGCTCGGTGTTGTGTCAGCCCC
GTCGGGTATGAAAGCTGAGCGCATCGATTGTCGGGATTGGGTAAACGTTC
TTCTCTGTAGCGCAATCAACGTCGTTAGGGTGTTGAGTGGTCGGTGTGTG
AAGGTCTTCCTGTTGTAGAGCAATCGACACTGATAAGGGTGTCGAATGTC
GGGCATGTAAATATTTCATCTGTTGCTGCATGCAACTAGATGAAATTTCA
AGTAAGCAAACGTACAGGATAAAGTTTAGAATCGGCGAAGTATGGGTTGG
GGTCAGGGTTAGGGTCTACGTTCTCCTTCCCTCGTATTTTTCGCATCAAC
CTTACATTCTTTGCGTAGGCAGTCCGAGCGGTTGTAAGCATCATTTGAAT
GTGTATTTCTTTGCTTCTTTTTCCGCCATCGATTCCGGGTGCTTGGAGTG
AAATATCGCCCCGACACCCCCCCGAATCTGTTTGTTGGTTAGTCAAGAAC
TGTTATCATCCATGATCGCATGTGATGATGGAAACTTATTTCTTCGTCCG
TGAAAAGTATCATTTGAATACGGCTAAGAGGAGGCCCTTGATACAAGCCG
TGGATAGATGGCGGAGCTGAACATATGTCGAAACCTCATCTTTATCCGAC
GACACACCCAACAACAACAACAATGACAACAAAAAACTGGGAGCGGCGGC
GTTGAGTCGAAGCATCCATTACCCCCAGGGCTGCGAAACCAATCACCCCC
CTTTCCTACTGAATTTTACGACGGCGTTTGTGGTCGTACATGGCCTGTCG
AAACGCGCCCGCAATGCCACACGCTCTGACCCTCAAATGCCAACCCCAAG
CGTATCACAGCAACGTTATCCCATGCCATGGCGTGCGCCGGCAGGATGTG
TCTGCGGTGACATACACTGACCAACCCGCAACCGCTCACAGCTACGTTTT
CCCCATGCCATGGCGTGCGCCGGCAGGATGTGTCTGCAGTGCCACACGCT
GAAGCAGGTAGCCGTAGGTGCCGCCGTTGGTACCACCACCGGCGGATTGT
GGTACCTCCTGTACTTGAAGGTGAGTCGGACCGAATGCCCAAGGTGCCGT
TCAAGCAGGGTCAAGGTTGAGGCTCATTTAGGCAAGCGCTCTTCGAGTAG
ACTGGGGAGTTCATCTCCTGATTTTTCGGGGGTGCCTCATGCTTTCTTTT
TATTTCGGAACTGCCTTGAATTTTGGTCGAGATGTGTGGTTGCTTCATTT
GTCACCGGGGCGGGAGGCGGAGGGCAATACCTCCATCATCTTTCGCGTCG
CGGTGGCAAGTCGTGTGTCTTTTTCACGATGAAGCATGCATGAAAATCTT
CCGAAATGTGCTGGAGGTTGAAATCGATTTTTGCCGCCTCCCTTTGCAGT
TCGAATAGCTTCATGTCAGCATATCACACCGCCATGAAAATGTGTTCCTT
TGGCGCTTCTGCCTGGTCTTTATCGACTAACCGATGACGAAAATTTGTTC
CTTTGGCGTTTTTGCCTTGTTTTTTTCCACTAACCGATGACGTCCCCCGC
TGAATGAGACACGGTGCCCCCCCCCCCCCCCCCCCCTCCGGTCTACAGGT
TTTGTTGCCATTGCTCCCGCGCGTGGCAAAGTGGCCGATAAGCCGGGCCT
TGTACGTGAAAGACTACTCGCAGGTGACGACCGTTTTTGCTTGTCTTTTC
CGTTCGTCTCACGCGCACAGTATTTATTCTGGGGCGCTTCTTTCTCGCCT
GCTTGGCGCTCACTGCAGACACAGTGATGTTGCGGCGTTCCTCTTATCGG
TGTCGTAGGAGGGTGTTACCTACAGTCGCCCGCGCAGGCTTCCAGTCGCT
ATAAGTAAAGCTTCTGAAACGTGCGTTGGCCGTTATTTTTCCATTTTTTA
TCTTGTCACGCTGGTATTTCGTCGCAAGTTCGAAATGCCTCCGCCAGGTG
TCGTACGCGCTTGCCTTCGAGCACGACGCGCTTCCAGTCGCTCGAAGCGC
CTTCGGGGCGCACAGTCGGTCGTTAATTTTCCGTTATTCTTTGTCGTGGT
GGTGTTTTGTCGCACGTTCGAAACGCCTTCGACAGGTGTCGAACGTGCTT
GCTTTCGAACACGACGCGCTGTACGGGGGCGGCGGCGGCGGCGGCGGCGG
CGAGGCCGTCGCTACGGGCAGCAGCAGCAGCAGCGGCGGGGTGCGAGCGA
GCAACCACGTAGACTCTTCGAGGAAGGTTCGCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11510:270..5104-

>mRNA_Ecto-sp13_S_contig11510.1325.1 ID=mRNA_Ecto-sp13_S_contig11510.1325.1|Name=mRNA_Ecto-sp13_S_contig11510.1325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11510:270..5104- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCACGACTGTCGTTGCCCTTCAGATACCTGGCCGTAGCGTATATGAC
CCTTGTGGTGGTGCGGCGGGACCTCCAGGTGTTCGTCCTCGCCGTGGGGC
ATCTGGTAGACCTCGTCGTCAACAAGGCCCTCAAGACTTGGATCGCTGAG
GCGAGACCGCCAGGCTGCGTCAACACAGGCCACGGGATGCCTTCTAATCA
CTCCCAGTACATGTTCTTCTTCGCCATCTTCGTGTCGCTGTACCTGTGGG
GCAGGGTTTCCTATTCGGCGGAGGCGAAGGTCGGTTTGACGACCGTCCTG
GTCGGCTGGGCGGCGTCGGTGGCGTACTCGAGGATGTGTCTGCAGTGCCA
CACGCTGAAGCAGGTAGCCGTAGGTGCCGCCGTTGGTACCACCACCGGCG
GATTGTGGTACCTCCTGTACTTGAAGGTTTTGTTGCCATTGCTCCCGCGC
GTGGCAAAGTGGCCGATAAGCCGGGCCTTGTACGTGAAAGACTACTCGCA
GGTGTCGAACGTGCTTGCTTTCGAACACGACGCGCTGTACGGGGGCGGCG
GCGGCGGCGGCGGCGGCGAGGCCGTCGCTACGGGCAGCAGCAGCAGCAGC
GGCGGGGTGCGAGCGAGCAACCACGTAGACTCTTCGAGGAAGGTTCGCTG
A
back to top