mRNA_Ecto-sp13_S_contig11502.1320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11502.1320.1
Unique NamemRNA_Ecto-sp13_S_contig11502.1320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11502.1320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11502contigEcto-sp13_S_contig11502:1510..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1135
Hectar predicted targeting categoryother localisation
Exons3
Cds size1134
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462604.0044851-CDS-Ecto-sp13_S_contig11502:1509..15541681462604.0044851-CDS-Ecto-sp13_S_contig11502:1509..1554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11502 1510..1554 -
1681462604.0152643-CDS-Ecto-sp13_S_contig11502:1830..27781681462604.0152643-CDS-Ecto-sp13_S_contig11502:1830..2778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11502 1831..2778 -
1681462604.0237546-CDS-Ecto-sp13_S_contig11502:3104..32451681462604.0237546-CDS-Ecto-sp13_S_contig11502:3104..3245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11502 3105..3245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11502.1320.1prot_Ecto-sp13_S_contig11502.1320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11502 1510..3245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11502.1320.1

>prot_Ecto-sp13_S_contig11502.1320.1 ID=prot_Ecto-sp13_S_contig11502.1320.1|Name=mRNA_Ecto-sp13_S_contig11502.1320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp
SRFSGGVSICSSSSSSSSSNDASIHLNNPGGVGRGYDSRIPAVFKAKGQQ
FALAFTPSADRVETEWAQHQRKVLASEQRAQGAAVPRMAAAKAPDTAQPR
ERDAESARCASRVEDSRGGSGNSSCCRNNGSHGSVSQLDPLDLPEGLNSG
RGEGSRGVDAEGIVTLDGDGYAEAAVGGDAERNCGESHTQADGVTVVEQD
ELAVEGGAGSSLVANHVDDEAQGGAAVGTEAGGSTGNTESVTTTQQDADS
RQEDKARDDSVGGAKGDEGTIEAKQDTKMSLSPGAFFDELLDTSDTESPH
DSGINSTWKRNGHNRDAEGTGSFLKDDKSSGSCVGGGVDLDGTSRRTCAV
LPWIVSRLGLLEQVEGCYESESKAFNKA
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mRNA from alignment at Ecto-sp13_S_contig11502:1510..3245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11502.1320.1 ID=mRNA_Ecto-sp13_S_contig11502.1320.1|Name=mRNA_Ecto-sp13_S_contig11502.1320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1736bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11502:1510..3245- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGATTTAGCGGCGGCGTCAGCATCTGCAGCAGCAGCAGTAGCAGCAG
CAGCAGCAACGACGCCAGCATCCACCTCAACAATCCTGGAGGGGTCGGTC
GGGGATACGACTCCCGCATCCCCGCGGTTTTCAAAGCCAAGGTTGGTTCC
ACTGTTAAATGTTTTCGAACATTTTCGTCCATAGCAAGAGTCCTTTCCAG
CGCGTCTGACGGGACATACCTCTAATTTATTCGGCAACGCTGGAAAGAAC
TGGGTAACGCTGTGCGAAGTTATCAGCGGGCGACGCTTAGCGCAAGCTGG
CGGAGAGCACCATCTCACTGTCCTACTGTACAATGTACGTGCTGTCGGGA
GTTGTTTTGGAAAACCTGTCAGAGGCTTAGAAACACAAGGACTCTCAAGC
CGACGAAATATACGGAATCACCGACCATGTTTCCCGGTGTGCCCCGCCGT
CGGTCGATGAAGAATAGGGACAGCAGTTCGCGCTTGCATTCACACCTTCG
GCGGACCGAGTCGAAACGGAATGGGCCCAGCACCAGCGAAAGGTGCTGGC
AAGCGAACAGCGAGCCCAAGGGGCTGCGGTCCCTAGGATGGCGGCAGCGA
AAGCACCGGACACAGCACAACCACGAGAGAGAGACGCGGAGAGCGCCAGG
TGTGCGTCGAGGGTAGAAGACAGCCGCGGCGGCAGCGGTAACAGCAGTTG
TTGCAGAAACAACGGGAGCCATGGCTCGGTCTCACAGTTGGATCCACTTG
ACCTGCCGGAGGGCTTAAACAGTGGGCGTGGCGAAGGGAGCAGAGGCGTG
GACGCCGAAGGAATCGTGACGCTCGACGGCGACGGGTACGCGGAAGCCGC
CGTTGGTGGAGATGCTGAAAGAAACTGCGGAGAATCCCACACGCAAGCTG
ACGGGGTAACAGTGGTGGAGCAAGACGAGCTCGCGGTTGAAGGAGGTGCT
GGATCCAGCCTCGTCGCCAACCATGTTGACGATGAGGCCCAGGGAGGTGC
TGCGGTGGGCACCGAGGCGGGCGGTTCGACCGGAAATACCGAAAGCGTGA
CAACGACGCAACAGGACGCGGATAGCAGACAAGAGGACAAGGCTCGCGAC
GACAGCGTTGGTGGTGCCAAAGGAGACGAAGGTACTATCGAGGCCAAACA
AGACACAAAGATGAGCTTGTCCCCGGGGGCCTTCTTCGACGAGTTACTCG
ACACGAGCGATACGGAGAGTCCACATGATAGCGGCATCAACAGCACGTGG
AAAAGGAACGGGCACAACCGAGACGCCGAAGGTACCGGGTCGTTCCTCAA
AGATGACAAGAGCAGCGGCTCCTGTGTCGGCGGTGGTGTCGACTTGGACG
GAACTTCCCGCAGAACGTGTGCTGTCCTTCCGTGGATTGTCAGTCGATTG
GGACTTCTGGAGCAGGCGAGCCACCCTTTTGACCCATCCGCATACGGGCG
TACATAGCCAGGACATTCATATAACTTGGAAGTATATATGTTTGCATATT
TTCGCAACGCTCTGCTTCCTCCCATGCCCGCAGTGGCAGATGTTTCCGGG
CCTGAGTCGTGGCCTCCCTTCTGGGTTATTCTGCGAGAGCTTAGTGGGAA
GCGGTTCCCCTTTAAATTTTTCGTGTATTCCCCTGGATACTGGATGTATC
ATCGGATGATTCTTCTTTGTCTCTCCCCGCCCAACCGTCAGGTGGAGGGA
TGCTATGAAAGTGAATCAAAGGCGTTTAACAAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11502:1510..3245-

>mRNA_Ecto-sp13_S_contig11502.1320.1 ID=mRNA_Ecto-sp13_S_contig11502.1320.1|Name=mRNA_Ecto-sp13_S_contig11502.1320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11502:1510..3245- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGATTTAGCGGCGGCGTCAGCATCTGCAGCAGCAGCAGTAGCAGCAG
CAGCAGCAACGACGCCAGCATCCACCTCAACAATCCTGGAGGGGTCGGTC
GGGGATACGACTCCCGCATCCCCGCGGTTTTCAAAGCCAAGGGACAGCAG
TTCGCGCTTGCATTCACACCTTCGGCGGACCGAGTCGAAACGGAATGGGC
CCAGCACCAGCGAAAGGTGCTGGCAAGCGAACAGCGAGCCCAAGGGGCTG
CGGTCCCTAGGATGGCGGCAGCGAAAGCACCGGACACAGCACAACCACGA
GAGAGAGACGCGGAGAGCGCCAGGTGTGCGTCGAGGGTAGAAGACAGCCG
CGGCGGCAGCGGTAACAGCAGTTGTTGCAGAAACAACGGGAGCCATGGCT
CGGTCTCACAGTTGGATCCACTTGACCTGCCGGAGGGCTTAAACAGTGGG
CGTGGCGAAGGGAGCAGAGGCGTGGACGCCGAAGGAATCGTGACGCTCGA
CGGCGACGGGTACGCGGAAGCCGCCGTTGGTGGAGATGCTGAAAGAAACT
GCGGAGAATCCCACACGCAAGCTGACGGGGTAACAGTGGTGGAGCAAGAC
GAGCTCGCGGTTGAAGGAGGTGCTGGATCCAGCCTCGTCGCCAACCATGT
TGACGATGAGGCCCAGGGAGGTGCTGCGGTGGGCACCGAGGCGGGCGGTT
CGACCGGAAATACCGAAAGCGTGACAACGACGCAACAGGACGCGGATAGC
AGACAAGAGGACAAGGCTCGCGACGACAGCGTTGGTGGTGCCAAAGGAGA
CGAAGGTACTATCGAGGCCAAACAAGACACAAAGATGAGCTTGTCCCCGG
GGGCCTTCTTCGACGAGTTACTCGACACGAGCGATACGGAGAGTCCACAT
GATAGCGGCATCAACAGCACGTGGAAAAGGAACGGGCACAACCGAGACGC
CGAAGGTACCGGGTCGTTCCTCAAAGATGACAAGAGCAGCGGCTCCTGTG
TCGGCGGTGGTGTCGACTTGGACGGAACTTCCCGCAGAACGTGTGCTGTC
CTTCCGTGGATTGTCAGTCGATTGGGACTTCTGGAGCAGGTGGAGGGATG
CTATGAAAGTGAATCAAAGGCGTTTAACAAGGCC
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