mRNA_Ecto-sp13_S_contig11500.1317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11500.1317.1
Unique NamemRNA_Ecto-sp13_S_contig11500.1317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11500.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11500contigEcto-sp13_S_contig11500:1717..2246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size530
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462603.7576904-UTR-Ecto-sp13_S_contig11500:1716..17741681462603.7576904-UTR-Ecto-sp13_S_contig11500:1716..1774Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11500 1717..1774 +
1681462603.7782984-UTR-Ecto-sp13_S_contig11500:2200..22461681462603.7782984-UTR-Ecto-sp13_S_contig11500:2200..2246Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11500 2201..2246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462603.7683556-CDS-Ecto-sp13_S_contig11500:1774..22001681462603.7683556-CDS-Ecto-sp13_S_contig11500:1774..2200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11500 1775..2200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11500.1317.1prot_Ecto-sp13_S_contig11500.1317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11500 1775..2200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11500.1317.1

>prot_Ecto-sp13_S_contig11500.1317.1 ID=prot_Ecto-sp13_S_contig11500.1317.1|Name=mRNA_Ecto-sp13_S_contig11500.1317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MLLCAKTVRREPVTSPAVEVHILGKALSTASWLGKCSCSFRTFCATTNEP
SQPQLAFVVPNASACGGIGEFAHRDGRTTNRRCCACCKVIRLTPRSMSLS
SLQYVSSVLLLRKVRYTVVAGRPPTVSSLFQATTPSHMLSV*
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mRNA from alignment at Ecto-sp13_S_contig11500:1717..2246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11500.1317.1 ID=mRNA_Ecto-sp13_S_contig11500.1317.1|Name=mRNA_Ecto-sp13_S_contig11500.1317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11500:1717..2246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACCGGTATAGGTAAGAGTGCCGTCGTGCAGATACGAGGCTGTCAA
ACCTCTACATGCTGCTTTGTGCAAAGACCGTCAGGCGGGAGCCCGTTACT
TCACCTGCAGTAGAGGTGCATATCTTGGGGAAAGCACTCTCCACCGCATC
GTGGTTGGGTAAATGCTCATGTAGCTTTCGAACGTTCTGCGCGACTACAA
ATGAACCATCACAGCCCCAGCTGGCGTTCGTTGTGCCCAATGCTTCGGCT
TGCGGAGGGATCGGCGAATTCGCCCACAGGGACGGCAGGACAACTAACCG
CCGTTGTTGTGCATGTTGCAAGGTTATCAGACTCACGCCTCGCTCAATGA
GCCTCAGCAGTCTACAGTACGTCTCAAGTGTCCTCCTTCTTAGAAAAGTA
CGGTACACAGTAGTCGCCGGGCGCCCACCCACCGTATCTTCACTCTTCCA
AGCAACGACGCCGTCTCACATGCTCTCAGTTTAGCGTACCTTGAGCGAAG
GAACCTCGATCGAGAGGAGCTCTTTCACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11500:1717..2246+

>mRNA_Ecto-sp13_S_contig11500.1317.1 ID=mRNA_Ecto-sp13_S_contig11500.1317.1|Name=mRNA_Ecto-sp13_S_contig11500.1317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11500:1717..2246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTTTGTGCAAAGACCGTCAGGCGGGAGCCCGTTACTTCACCTGC
AGTAGAGGTGCATATCTTGGGGAAAGCACTCTCCACCGCATCGTGGTTGG
GTAAATGCTCATGTAGCTTTCGAACGTTCTGCGCGACTACAAATGAACCA
TCACAGCCCCAGCTGGCGTTCGTTGTGCCCAATGCTTCGGCTTGCGGAGG
GATCGGCGAATTCGCCCACAGGGACGGCAGGACAACTAACCGCCGTTGTT
GTGCATGTTGCAAGGTTATCAGACTCACGCCTCGCTCAATGAGCCTCAGC
AGTCTACAGTACGTCTCAAGTGTCCTCCTTCTTAGAAAAGTACGGTACAC
AGTAGTCGCCGGGCGCCCACCCACCGTATCTTCACTCTTCCAAGCAACGA
CGCCGTCTCACATGCTCTCAGTTTAG
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