mRNA_Ecto-sp13_S_contig11500.1316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11500.1316.1
Unique NamemRNA_Ecto-sp13_S_contig11500.1316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11500.1316.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI)

HSP 1 Score: 509 bits (1310), Expect = 1.030e-176
Identity = 289/318 (90.88%), Postives = 294/318 (92.45%), Query Frame = 1 
Query:    1 MVDEGGADVCENFEGSEVLLALHTLVKELLSIEVPSLKEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITLWKYQASLPASTLCAEAATVVLFVALVLLRRFIVRQRYIPRARRRVRNFRARINTAYVSFTLSVERNLRLSARAFPHVVYWTAAASFAWLAPGLTRSLRDKFWVFATATWPTLYAVYLILLVRSQNAVRDEDSAGGSSVNGTTGSAGTRGTAAKAPLLYAPGAKXXXXXXXXXXXXXXXXXXRSGLARGSGVMPQDVDRVLMYWVVFTVARCWGLLAAYVPETFFTPY 954
            MVDEGGADVCE  EGSEVLLAL TLVKELLSIEVPSLKEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAIT+ KYQASLPASTLCAEAA VVLF+ALVLLRRFIVRQRYIPRARRRVRNFRARINTAY+SFT SVERNLRLSARAFPHVVYWTAAASFAWLAP LT SLRDKFWVFATATWPTLYAVYL+LLVRSQNAV DEDSAGGSSVNGT   AGTRGTAA           XXXXXXXXXXXXXXXXX RSGLARG+GVMPQDVDRVLMYWVVFTVARCWGLLAAYVPETFFTPY
Sbjct:    1 MVDEGGADVCEKIEGSEVLLALRTLVKELLSIEVPSLKEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVCKYQASLPASTLCAEAAAVVLFIALVLLRRFIVRQRYIPRARRRVRNFRARINTAYMSFTASVERNLRLSARAFPHVVYWTAAASFAWLAPDLTGSLRDKFWVFATATWPTLYAVYLVLLVRSQNAVNDEDSAGGSSVNGTPAGAGTRGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSGLARGAGVMPQDVDRVLMYWVVFTVARCWGLLAAYVPETFFTPY 318
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BLAST of mRNA_Ecto-sp13_S_contig11500.1316.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.660e-16
Identity = 85/315 (26.98%), Postives = 134/315 (42.54%), Query Frame = 1 
Query:   37 FEGSEVLLALHTLV-KELLSIEVPSLKEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITLWKYQASLPASTLCAEAATVVLFVALVLLRRFIVRQRYIPRARRRVRNFRARIN-------TAYVSFTLSVERNLRLSARAFPHVVYWTAAASFAWLAPGLTRSLR-DKFWVFATATWPTLYAVYLILLVR----SQNAVRDEDSAGGSSVN---GTTGSAGTRGTAAKAPLLYAPGAKXXXXXXXXXXXXXXXXXXRSGLARGSGVMPQDVDRVLMYWVVFTVARCWGLLAAYVP 933
            F+   +L  L T +   +  + +  L  +  A   A   +W SL  W  +  L L P +     +   +WP  + A + L ++Q +   + +  EAA +   VA++LLRR+++R R +PRA+  +   RA +         A+     SV +  +L+A+  PH++YW  AA+ A L P    +L     W F T  WP L  + L    +    S +A  DE   GG+  +   GT    G RG A          AK                    G     G   ++VD  LMYW+VF +A+C   +   VP
Sbjct:   56 FDQVRLLWTLGTRMWSNICQMRIDPLAAYTDAASEAASYTWKSLVGWLRLAHLILKPFIGIANAIGMEIWPFVRAAGVGLARWQVTRSLTFILLEAALIGAVVAMLLLRRYMIRNRLLPRAQSWIEAKRALVRQRHDSAKAAFQQLQRSVAKKSKLAAQMLPHMLYWAVAAAAALLLPAHMAALSLGPAWEFVTVGWPILTTIMLARGRKRSGASPSAALDEGVKGGARPSIRAGTPSGKGKRG-AXXXXXXXXQVAKP------------------KGEEEPGG---RNVDEALMYWIVFALAQCCAYVLGLVP 348
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11500.1316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF13_ECTSI1.030e-17690.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEP2_9STRA2.660e-1626.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11500contigEcto-sp13_S_contig11500:1..2319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score509.6
Seed ortholog evalue1e-141
Seed eggNOG ortholog2880.D8LF13
Model size954
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.TB2/DP1, HVA22 family
EggNOG OGs28M3K@1,2QTKE@2759
Ec32 ortholog descriptionTB2/DP1/HVA22-related protein
Ec32 orthologEc-21_006310.1
Cds size954
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462603.8150454-CDS-Ecto-sp13_S_contig11500:0..8401681462603.8150454-CDS-Ecto-sp13_S_contig11500:0..840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11500 1..840 -
1681462603.8264618-CDS-Ecto-sp13_S_contig11500:2205..23191681462603.8264618-CDS-Ecto-sp13_S_contig11500:2205..2319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11500 2206..2319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11500.1316.1prot_Ecto-sp13_S_contig11500.1316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11500 1..2319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11500.1316.1

>prot_Ecto-sp13_S_contig11500.1316.1 ID=prot_Ecto-sp13_S_contig11500.1316.1|Name=mRNA_Ecto-sp13_S_contig11500.1316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
MVDEGGADVCENFEGSEVLLALHTLVKELLSIEVPSLKEFVLAFQAAFET
SWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITLWKYQASLPA
STLCAEAATVVLFVALVLLRRFIVRQRYIPRARRRVRNFRARINTAYVSF
TLSVERNLRLSARAFPHVVYWTAAASFAWLAPGLTRSLRDKFWVFATATW
PTLYAVYLILLVRSQNAVRDEDSAGGSSVNGTTGSAGTRGTAAKAPLLYA
PGAKTPREGTPRAGTPGAGTPARSGLARGSGVMPQDVDRVLMYWVVFTVA
RCWGLLAAYVPETFFTPY
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mRNA from alignment at Ecto-sp13_S_contig11500:1..2319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11500.1316.1 ID=mRNA_Ecto-sp13_S_contig11500.1316.1|Name=mRNA_Ecto-sp13_S_contig11500.1316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11500:1..2319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACGAAGGAGGTGCCGATGTCTGCGAAAATTTTGAGGGGTCGGA
GGTCCTCCTCGCCCTCCACACGCTGGTGAAAGAGCTCCTCTCGATCGAGG
TTCCTTCGCTCAAGGTACGCTAAACTGAGAGCATGTGAGACGGCGTCGTT
GCTTGGAAGAGTGAAGATACGGTGGGTGGGCGCCCGGCGACTACTGTGTA
CCGTACTTTTCTAAGAAGGAGGACACTTGAGACGTACTGTAGACTGCTGA
GGCTCATTGAGCGAGGCGTGAGTCTGATAACCTTGCAACATGCACAACAA
CGGCGGTTAGTTGTCCTGCCGTCCCTGTGGGCGAATTCGCCGATCCCTCC
GCAAGCCGAAGCATTGGGCACAACGAACGCCAGCTGGGGCTGTGATGGTT
CATTTGTAGTCGCGCAGAACGTTCGAAAGCTACATGAGCATTTACCCAAC
CACGATGCGGTGGAGAGTGCTTTCCCCAAGATATGCACCTCTACTGCAGG
TGAAGTAACGGGCTCCCGCCTGACGGTCTTTGCACAAAGCAGCATGTAGA
GGTTTGACAGCCTCGTATCTGCACGACGGCACTCTTACCTATACCGGTCT
CATACAGCAGTATGGTTTGACAACTACTCTTATGTACACGACTTGCTGTA
GATACCCAGTGATAATTTGGGAGAGTTGAACTAGGATGCGAAGATTTTTG
AATACTCTGTGACTAAACAGCAGCGCGTACTGCAGCCATTACTACCTCTT
GGGGTAAATCATGTGTCTTTTGGGCATGTTCAGAGGGTCGGGAGTCGGGA
GACTTTGTCTTCGTGCCTTGTTGGCTGAACGTTCGTGTTGGAATGCCTTA
TCATTGTATGAAGGACATGTGTGTCTTCTTCCGTCTCTTTCGGTAGGCTT
GCGTTTGTCCCGATTCAGAACGCGGCTGCTACAATTGTACGCTCTTTTCT
CGGCAGAAGTGCCATGGGTGTGGACGCTGGGTCTGTAGACTGGACTATTT
TATCACCAGCCGAACACGCACAAAGTTGTCGGCTTCGCTGCTGCACTTGA
AGATCAAAGGGGTTGTGCTTCCCGTTGTTTTCGTAATAAACAAGAGCAGT
ACCGGCGAGGTCCTACCCTTCTGCTGTGCCACCATTGCCGTGACGACGCC
ACCCCCGACCAGTATGTATGATAGATATCGTATACACATGCCGAGGATCA
CCGATGTAGAAATTCGGTAGGATCAACCGCCACCGTACCTCGCAGCTCAG
CTCGCTTCGTCCGGCCGTCCTCTTTTGCCTGATGTTGTTCCCAATGTGGT
GGAGATGGACCTATCACACAGGCTCACATCTCCCCGAACAACGTCTGTCG
AGGAACTTTTCCTCTTCTTTTCACGATACATCGCTTTCAACAGTCTAACT
TCCTTGGTTGCTCCCCCTTTTTCTGTGCGCCCCTCCTCTCCCCGCTCTAA
CGGACGTTCCACGGACGACACGAAAAAAGGAGTTCGTCCTGGCATTCCAG
GCGGCGTTCGAGACCTCCTGGCACTCGCTGTCAGCCTGGTTCTCGGTCCT
AACGCTCTTCCTCTCGCCCGTGCTCCAGTTCCTGGCGGTACTCGCGCGGG
CCGTATGGCCCCACGCCCAGACCGCAGCCATCACCCTATGGAAGTACCAG
GCTTCTCTGCCGGCCTCCACGCTGTGCGCCGAGGCAGCCACCGTCGTACT
CTTCGTCGCGCTCGTCCTCCTGCGGCGCTTCATCGTGCGGCAGCGGTACA
TACCCCGCGCCCGTCGCCGGGTGCGCAACTTCCGCGCGAGGATCAACACC
GCGTACGTGTCCTTCACGTTGTCGGTCGAGCGGAACCTGCGGCTCTCCGC
GCGCGCGTTCCCCCATGTGGTCTACTGGACGGCCGCGGCCTCCTTCGCGT
GGCTGGCCCCCGGCCTGACCAGAAGCCTCCGGGACAAGTTCTGGGTGTTC
GCGACGGCCACTTGGCCGACCCTCTACGCCGTCTACCTGATACTCCTGGT
AAGGAGCCAGAACGCGGTCAGAGACGAGGATAGCGCCGGCGGCAGCTCTG
TTAACGGGACTACAGGTAGCGCTGGCACAAGGGGGACGGCGGCAAAAGCA
CCACTTTTGTATGCGCCGGGAGCGAAGACACCACGGGAGGGCACGCCCAG
GGCGGGCACGCCCGGGGCGGGCACGCCGGCTAGGTCGGGGCTGGCGCGCG
GCTCTGGCGTAATGCCGCAGGACGTGGACCGGGTGTTGATGTACTGGGTT
GTGTTCACGGTGGCGAGGTGCTGGGGGTTGCTGGCGGCGTACGTGCCGGA
GACATTCTTCACGCCGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11500:1..2319-

>mRNA_Ecto-sp13_S_contig11500.1316.1 ID=mRNA_Ecto-sp13_S_contig11500.1316.1|Name=mRNA_Ecto-sp13_S_contig11500.1316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11500:1..2319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACGAAGGAGGTGCCGATGTCTGCGAAAATTTTGAGGGGTCGGA
GGTCCTCCTCGCCCTCCACACGCTGGTGAAAGAGCTCCTCTCGATCGAGG
TTCCTTCGCTCAAGGAGTTCGTCCTGGCATTCCAGGCGGCGTTCGAGACC
TCCTGGCACTCGCTGTCAGCCTGGTTCTCGGTCCTAACGCTCTTCCTCTC
GCCCGTGCTCCAGTTCCTGGCGGTACTCGCGCGGGCCGTATGGCCCCACG
CCCAGACCGCAGCCATCACCCTATGGAAGTACCAGGCTTCTCTGCCGGCC
TCCACGCTGTGCGCCGAGGCAGCCACCGTCGTACTCTTCGTCGCGCTCGT
CCTCCTGCGGCGCTTCATCGTGCGGCAGCGGTACATACCCCGCGCCCGTC
GCCGGGTGCGCAACTTCCGCGCGAGGATCAACACCGCGTACGTGTCCTTC
ACGTTGTCGGTCGAGCGGAACCTGCGGCTCTCCGCGCGCGCGTTCCCCCA
TGTGGTCTACTGGACGGCCGCGGCCTCCTTCGCGTGGCTGGCCCCCGGCC
TGACCAGAAGCCTCCGGGACAAGTTCTGGGTGTTCGCGACGGCCACTTGG
CCGACCCTCTACGCCGTCTACCTGATACTCCTGGTAAGGAGCCAGAACGC
GGTCAGAGACGAGGATAGCGCCGGCGGCAGCTCTGTTAACGGGACTACAG
GTAGCGCTGGCACAAGGGGGACGGCGGCAAAAGCACCACTTTTGTATGCG
CCGGGAGCGAAGACACCACGGGAGGGCACGCCCAGGGCGGGCACGCCCGG
GGCGGGCACGCCGGCTAGGTCGGGGCTGGCGCGCGGCTCTGGCGTAATGC
CGCAGGACGTGGACCGGGTGTTGATGTACTGGGTTGTGTTCACGGTGGCG
AGGTGCTGGGGGTTGCTGGCGGCGTACGTGCCGGAGACATTCTTCACGCC
GTAC
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