mRNA_Ecto-sp13_S_contig115.1313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig115.1313.1
Unique NamemRNA_Ecto-sp13_S_contig115.1313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig115.1313.1 vs. uniprot
Match: D8LDV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV6_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 2.280e-124
Identity = 231/257 (89.88%), Postives = 236/257 (91.83%), Query Frame = 1 
Query:    1 AVFRTLPAEVAGELAYVHDQMILDFLMKKACPEVKASALDIAEKWEEVCRQICIQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREQEVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRXXXXXXXXXQSAADEEHEAFENKKAMDKERLAXXXXXXXXXXQQELNELADSDPAEYDRRMKEWHKRKIEGRDGTSSSLGGDAVNHTESGDLERRKSLARERRSARRVAMQTRPTIGIPKK 771
            AVFRTLPAEVA ELAYVHDQMILDFLM KACPEVKASALD AEKWEEVCRQICIQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREQEVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRR         QS A+EE +  ENKKAMD     XXXXXXXXXXQQELNELADSDPAEYDRR+KEWHKRKIEGRDGTSSSLGGDAV+HTESGDLERRKSLARERRSARRVAMQTRP+IGIPKK
Sbjct: 3360 AVFRTLPAEVADELAYVHDQMILDFLMIKACPEVKASALDTAEKWEEVCRQICIQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREQEVKDAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRREAKAKDEDQSVANEERKTLENKKAMDXXXXXXXXXXXXXXXQQELNELADSDPAEYDRRIKEWHKRKIEGRDGTSSSLGGDAVDHTESGDLERRKSLARERRSARRVAMQTRPSIGIPKK 3616
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig115.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDV6_ECTSI2.280e-12489.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig115contigEcto-sp13_S_contig115:23197..26377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score406.8
Seed ortholog evalue7.8e-111
Seed eggNOG ortholog2880.D8LDV6
Model size775
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2CAM4@1,2S38S@2759
Cds size774
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig115.1313.1prot_Ecto-sp13_S_contig115.1313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig115 23197..26377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462603.2940862-CDS-Ecto-sp13_S_contig115:23196..232451681462603.2940862-CDS-Ecto-sp13_S_contig115:23196..23245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig115 23197..23245 -
1681462603.3044639-CDS-Ecto-sp13_S_contig115:23716..239251681462603.3044639-CDS-Ecto-sp13_S_contig115:23716..23925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig115 23717..23925 -
1681462603.3136632-CDS-Ecto-sp13_S_contig115:24324..244861681462603.3136632-CDS-Ecto-sp13_S_contig115:24324..24486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig115 24325..24486 -
1681462603.3232226-CDS-Ecto-sp13_S_contig115:24782..249321681462603.3232226-CDS-Ecto-sp13_S_contig115:24782..24932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig115 24783..24932 -
1681462603.3328369-CDS-Ecto-sp13_S_contig115:25526..256431681462603.3328369-CDS-Ecto-sp13_S_contig115:25526..25643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig115 25527..25643 -
1681462603.3441494-CDS-Ecto-sp13_S_contig115:26290..263771681462603.3441494-CDS-Ecto-sp13_S_contig115:26290..26377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig115 26291..26377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig115.1313.1

>prot_Ecto-sp13_S_contig115.1313.1 ID=prot_Ecto-sp13_S_contig115.1313.1|Name=mRNA_Ecto-sp13_S_contig115.1313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
AVFRTLPAEVAGELAYVHDQMILDFLMKKACPEVKASALDIAEKWEEVCR
QICIQAAYIRVAALWAEEEEEVVLMADARAEEGVRKAEAKLRKQREQEVK
DAEKDAAEMAHLMANDPEAHMRRVVQKRADDADRRRREAKAKDEDQSAAD
EEHEAFENKKAMDKERLAKEAKEKEAREQQELNELADSDPAEYDRRMKEW
HKRKIEGRDGTSSSLGGDAVNHTESGDLERRKSLARERRSARRVAMQTRP
TIGIPKK*
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mRNA from alignment at Ecto-sp13_S_contig115:23197..26377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig115.1313.1 ID=mRNA_Ecto-sp13_S_contig115.1313.1|Name=mRNA_Ecto-sp13_S_contig115.1313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3181bp|location=Sequence derived from alignment at Ecto-sp13_S_contig115:23197..26377- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTTTTCCGAACCCTACCAGCGGAAGTGGCTGGCGAGCTGGCCTACGT
TCACGACCAAATGATCCTCGACTTCCTGATGAAAAAGGTGCAATGAGATG
TAGATGTGAAAAGAAGCAACACCTCCGTGGAAGCAACGATCTGGCCCGTG
CCTTTGCAGTTGTGCACCTCAACCGGGAGCAGTTCACCGCAAACGGTGCT
TGTGCGCCTGACCTCCGCTGAGCCGTCAACTCTGAGTCGGGGATCCCACA
ACGGGGAAGTTGCTGTGAGGCTTCATACATGTGATGAGGTGGAATAGGCG
TTGATGATCATTTTCTTGCGCCCGGCGTTGTGCTTCGTTCCACCGTTGAG
GAATAGGCGTCACAATCTGATGCCCCGGCTCTCGAGGGTTCATACGCAAC
ACCCTATGCGCACGACATTGTATTGGTGCGTGCCATAGGCGGCACAGTCT
TTGGCCCTGAAAGAGGACCGTACGCCAGCATGAGCACCACGAATGAGGCC
TGCATATGGCCCCAGGTGGTTTCGTTAATCGGCCTCGTAAAAAAAGTCAC
CTTCGAGGTGACATTTGTGGCGTACAACGTTACGTGTAGGGGACCTTTTG
GAGTCATCGACGTGAGAATTTTCGTCCCGCTACACGAGGAAACCTGCCAC
CTGCACCCCCAGCCCCCTTCCCAGCAGCCCCTAAGTAAGACGTCATCGTG
TGCACCCTTTTTGAACTACCTTCCTACGACCAAGGCGTGTCCGGAAGTGA
AGGCATCGGCTCTGGACATTGCGGAGAAATGGGAAGAGGTCTGCCGACAG
ATTTGCATACAAGCGGCATATATTCGTGTGGCCGCGTTGTGGGCAGAAGA
GGTAAAACAAAGAAGCAACTACTACACAATCAAAGGGCACCAGTCTCGAG
CGGATTCGCAAATTATTGTTTCGATAGTGCAGGAAATGCCACGCAAGGAG
AAGGTACTATGGTGAAGGTATCGAGGACGTGCGCTCTGCCCCGGTCCTAG
TTGTATCAAGGGAAAAATAGTGGACGTGTTTCATGGTCGGAACGCCCATG
CTTCAGGTTAGGATTTTGCTGTGCCTGCGTATCGTCAGGCGTAGGTGGAA
GGCTGTAGTATCCTGGTACGTTGTCTCGACAACATGTGCTGGTGTTCGCT
TTTAACAACGTCGTAGTTGACTATGAACGAACATCAATTCCTTGGTCATC
CATCGTCTGCGCGCTAAATTTGCTTGGAGACGGGCAACTTCGTGTCCACA
AGCTCAACGTTGACCAAATCTATAGAAACTGCTTTAATCCGGCCCTGACT
GCATATTGACTACGGCACAGTCGAATGAAACGCTAGCCACAGTGTTGTTG
ATGATGTGCCACTCCTTGTACGCCTTCTCACGCAAGTGGTGTTCAGGAAG
GCATGAAAAATTGCAGTCAATGCTTCGTTCGGTCTCGGTTTCCAGGAAGA
GGAGGTCGTATTGATGGCGGACGCCCGTGCCGAGGAGGGAGTGCGCAAGG
CGGAAGCGAAGCTGAGAAAACAGCGGGAGCAGGAGGTTAAAGACGCTGAA
AAAGATGCCGCTGAGATGGCACACCTCATGGCGAATGACCCCGAGGTGCG
TTTTGTTTACACCCTTGCCTTCAATCCCGTGCCCCCCTTATCTATTGTTG
TTTTGAACACGTTCCCCTTTCCCAAACAACAACAGGGAGTCGTAGTCGGG
AGATAGGGTCCCACGGACGCTGCTGGTGTTTCGCGGTAGTTGTGATGTGG
GGTGGAAAGCATCCCTTTGGCGCCCCACATCGTGTCCATCAACGCCTAAA
CCTTCTCTCGACCTACCTGCCTCCGCGATGCTTCTGTCATTACCTTGATG
ATGGCGATGACGACGACAACAACAACGATCACAATCCGAAGGCTCACATG
AGGAGAGTCGTCCAAAAGCGAGCCGACGACGCGGACAGGCGTAGGCGAGA
GGCTAAGGCCAAGGACGAGGACCAGTCGGCGGCCGACGAGGAGCACGAGG
CCTTTGAGAACAAGAAGGCCATGGACAAGGAGAGGCTTGCGAAAGAGGCT
AAGGTGTGGAGGCAGCGTTTGTGGTAGTAAAGTGACCGGCAGGAAACGCG
ACTCGCAACAATTCAGTTTGGTCAGCATTCGTGCAAGTCGTATCCATCGC
ATGTTCGCTTGGCGGGGAGGGTCCTTCAACACGCTCCTAGTAGCGAAGAC
CCCTTGACTCTTTGGCGGCGGTTGGGATGCCATGCACAGATCTCGTCCAG
GCACCTTGTTGTTGCTCTCCCATTTTAAACGTTGGTTGACATGCGTGAGG
ATACGGGTCGGGCGGCGTGCTCCTTGCCCATGCCCTTCCTGGCAATGGCT
CCGACAGATATGACAAAGATATGAGGAAATAAATGTTAGCACCAGCAATA
TTCCACAATGCGAGGCAAACATGGTTCCTGCCTTACTGATCCTCCACGCC
AGGAAAAGGAGGCAAGAGAACAGCAAGAGCTGAATGAGCTAGCGGACTCG
GACCCAGCCGAGTACGACCGGCGGATGAAGGAATGGCACAAGAGAAAGAT
CGAGGGGAGGGATGGGACTTCGAGCAGCCTGGGCGGCGACGCAGTGAATC
ATACAGAGAGCGGCGACCTAGAGCGAAGAAAATCGCTAGCGCGGGAGAGA
AGATCGGCAAGGTCAGGCGGCATCATGCTGTGTACACCAGCCTACTTTTT
TGGCCTGGAATTTTTTACGTGTGTGATGACCTCGCAGATTTTCTGGTTAT
GAGCTTCGTTTGTAAACTTGTGACCCAACTTAAAGTATCGCTAGACAGAG
TGTGTGCGCACAAACAACGGGATACCTCGTTCATCGAACAGTGAACCCGA
AATCGCTAAGTGGTGAACATTGTCACAGGAAGTCATAACAATCGCCTCAA
ACACTAAGTTTAGAACCATGCGAATGACATTCTTGATCTGGCTCCTTGGC
AGTGCACCTCGTAACTGAACAAGTTCGTCTCATGCCAAAAAACAACGCAA
AACGTTCGAAACACCCACCAAACATCACAACCCCCGTTGCCCTCATTCGC
GTCGACAAAACACTTTTTCGGCCCTTGTTTCGTTCGTGACATGGTTGTGT
GGAACGGCGATTGGACATTGGGGTTCGCCCAGGAGGGTCGCGATGCAGAC
GCGACCGACGATCGGTATTCCCAAAAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig115:23197..26377-

>mRNA_Ecto-sp13_S_contig115.1313.1 ID=mRNA_Ecto-sp13_S_contig115.1313.1|Name=mRNA_Ecto-sp13_S_contig115.1313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig115:23197..26377- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTTTTCCGAACCCTACCAGCGGAAGTGGCTGGCGAGCTGGCCTACGT
TCACGACCAAATGATCCTCGACTTCCTGATGAAAAAGGCGTGTCCGGAAG
TGAAGGCATCGGCTCTGGACATTGCGGAGAAATGGGAAGAGGTCTGCCGA
CAGATTTGCATACAAGCGGCATATATTCGTGTGGCCGCGTTGTGGGCAGA
AGAGGAAGAGGAGGTCGTATTGATGGCGGACGCCCGTGCCGAGGAGGGAG
TGCGCAAGGCGGAAGCGAAGCTGAGAAAACAGCGGGAGCAGGAGGTTAAA
GACGCTGAAAAAGATGCCGCTGAGATGGCACACCTCATGGCGAATGACCC
CGAGGCTCACATGAGGAGAGTCGTCCAAAAGCGAGCCGACGACGCGGACA
GGCGTAGGCGAGAGGCTAAGGCCAAGGACGAGGACCAGTCGGCGGCCGAC
GAGGAGCACGAGGCCTTTGAGAACAAGAAGGCCATGGACAAGGAGAGGCT
TGCGAAAGAGGCTAAGGAAAAGGAGGCAAGAGAACAGCAAGAGCTGAATG
AGCTAGCGGACTCGGACCCAGCCGAGTACGACCGGCGGATGAAGGAATGG
CACAAGAGAAAGATCGAGGGGAGGGATGGGACTTCGAGCAGCCTGGGCGG
CGACGCAGTGAATCATACAGAGAGCGGCGACCTAGAGCGAAGAAAATCGC
TAGCGCGGGAGAGAAGATCGGCAAGGAGGGTCGCGATGCAGACGCGACCG
ACGATCGGTATTCCCAAAAAGTAG
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