mRNA_Ecto-sp13_S_contig11494.1308.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11494.1308.1
Unique NamemRNA_Ecto-sp13_S_contig11494.1308.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11494.1308.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 487 bits (1254), Expect = 1.040e-170
Identity = 255/285 (89.47%), Postives = 259/285 (90.88%), Query Frame = 1 
Query:    1 ENLAAYPAEFMTEGQATIAQFVTCRSKSGMMSFPNFNGNDKPLQYVDFRLLAEEAERAGVDVRFVYLARSARSILISDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDEDTAQHLEEKMLENVKPGSASPQPGSKPSNPTMEWTKQQGRLANGAMNYHPKDPRYGPHRAKYDGNQFLKAGTAERAAELEXXXXXXXXXXXXXXXXXXXXXEARDRDSWDLSFELVVARLQQKLDKIEEVVCTTIATTMGTSDGSA 855
            ENLAAYPAEFMTEGQA IAQFVTCRSKSGMMSFPNFNGNDK LQYVDFRLLAEEAERAGVDVRFVYLARSARSIL+SDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQ HRVARFIAPDEDTAQ LE KMLENVKPGSASP    +PSNPTMEWTKQQGRL NGAMNYHPKDPRYGPHRAKYDGNQFL AGTAE+AAELE    XXXXXXX          EARDRDSWDLSFELVVARLQQKLDKIEE+VCTT ATTMGTSDGSA
Sbjct:  133 ENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTAQRLEGKMLENVKPGSASP----RPSNPTMEWTKQQGRLPNGAMNYHPKDPRYGPHRAKYDGNQFLNAGTAEQAAELEAAAAXXXXXXXTTIEAERAKEEARDRDSWDLSFELVVARLQQKLDKIEEIVCTTTATTMGTSDGSA 413
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BLAST of mRNA_Ecto-sp13_S_contig11494.1308.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.410e-61
Identity = 110/192 (57.29%), Postives = 139/192 (72.40%), Query Frame = 1 
Query:    1 ENLAAYPAEFMTEGQATIAQFVTCRSK-SGMMSFPNFNGNDKPLQYVDFRLLAEEAERAGVDVRFVYLARSARSILISDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDEDTAQHLEEKMLENVKPGSASPQPGSKPSNPTMEWTKQQGRLANGAMNYHPKD 573
            E LAA+P E + EG++T+  F  CR + +GMMS+PNFNG++K LQYVDFRL+AEEAERAGVD+RFVYLARSA  IL SD+ H++YGG+F+RESR L+NN AVV STFQEL P F TCFRY  M+DP QA RVA F+AP+  TA+ L ++ML +VK  S  P+ G+K S     W +   RL       HP+D
Sbjct:   51 EKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGSFIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLSHVKIKSP-PESGNKQS-----WGEGGKRLR------HPED 230
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BLAST of mRNA_Ecto-sp13_S_contig11494.1308.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 6.790e-59
Identity = 98/155 (63.23%), Postives = 124/155 (80.00%), Query Frame = 1 
Query:    1 ENLAAYPAEFMTEGQATIAQFVTCRSK-SGMMSFPNFNGNDKPLQYVDFRLLAEEAERAGVDVRFVYLARSARSILISDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDEDTAQHLEEKMLENVK 462
            E LAA+P E + EG++T+  F  CR + +GMMS+PNFNG++K LQYVDFRL+AEEAERAGVD+RFVYLARSA  IL SD+ H++YGG+F+RESR L+NN AVV STFQEL P F TCFRY  M+DP QA RVA F+AP+  TA+ L +++L +VK
Sbjct:  174 EKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGSFIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTAEKLADQILSHVK 328
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BLAST of mRNA_Ecto-sp13_S_contig11494.1308.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.210e-8
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   82 SGMMSFPNFNGNDKPLQYVDFRLLAEEAERAGVDVRFVYLARSARSILISDTQHNHY 252
            +G +S+P  NG  K  QYVD RLLAE AE  GVD+R +Y+ RSA+ +L++DT H  +
Sbjct:   65 TGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGF 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11494.1308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMV3_ECTSI1.040e-17089.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KIA1_9PHAE2.410e-6157.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV4_ECTSI6.790e-5963.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1E6_ECTSI4.210e-850.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11494contigEcto-sp13_S_contig11494:17..3785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.9
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog44056.XP_009035729.1
Model size858
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002620.1
EC3.1.3.16
Cds size828
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462602.8918738-UTR-Ecto-sp13_S_contig11494:16..461681462602.8918738-UTR-Ecto-sp13_S_contig11494:16..46Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11494 17..46 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462602.9027417-CDS-Ecto-sp13_S_contig11494:46..971681462602.9027417-CDS-Ecto-sp13_S_contig11494:46..97Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11494 47..97 +
1681462602.9122455-CDS-Ecto-sp13_S_contig11494:690..8691681462602.9122455-CDS-Ecto-sp13_S_contig11494:690..869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11494 691..869 +
1681462602.9217772-CDS-Ecto-sp13_S_contig11494:2063..23341681462602.9217772-CDS-Ecto-sp13_S_contig11494:2063..2334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11494 2064..2334 +
1681462602.978741-CDS-Ecto-sp13_S_contig11494:3458..37851681462602.978741-CDS-Ecto-sp13_S_contig11494:3458..3785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11494 3459..3785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11494.1308.1prot_Ecto-sp13_S_contig11494.1308.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11494 47..3785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11494.1308.1

>prot_Ecto-sp13_S_contig11494.1308.1 ID=prot_Ecto-sp13_S_contig11494.1308.1|Name=mRNA_Ecto-sp13_S_contig11494.1308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
MTEGQATIAQFVTCRSKSGMMSFPNFNGNDKPLQYVDFRLLAEEAERAGV
DVRFVYLARSARSILISDTQHNHYGGTFMRESRALINNAAVVESTFQELG
PGFATCFRYESMSDPEQAHRVARFIAPDEDTAQHLEEKMLENVKPGSASP
QPGSKPSNPTMEWTKQQGRLANGAMNYHPKDPRYGPHRAKYDGNQFLKAG
TAERAAELEAAAAEAAAEASKAIEAERAKEEARDRDSWDLSFELVVARLQ
QKLDKIEEVVCTTIATTMGTSDGSA*
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mRNA from alignment at Ecto-sp13_S_contig11494:17..3785+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11494.1308.1 ID=mRNA_Ecto-sp13_S_contig11494.1308.1|Name=mRNA_Ecto-sp13_S_contig11494.1308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3769bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11494:17..3785+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACCTGGCCGCCTACCCCGCGGAATTCATGACGGAAGGGCAGGCGAC
CATCGCTCAATTCGTGACGTGCCGCTCCAAGGTTGGCGGCCTTGGCTTGA
AAGTAGCGCCTGTGTTGGAAGGCGCGCCTTGCTGCTGCTTGTGGTGGAGC
GGCCGTCGGTAGCCTTCTCGAGGAATTTTTGCTTGGGGGGTACGGGGGTT
AGGGTAAGGGAAACGAAGGCCCCCTCTCTATTTCATTAGTAATATTAACC
TCGCGACGGTGGTCCGTGGCCCTACGAAGTCGTGGTCGCGTCGTAGGGGA
GGGGAAGGAGGTGTGGTGGAACTAGTGTTTGGTGCCTGTCTTTCGTTGGC
GTCTCCACTGCTGTTGCCACTTTCGGGCGTGGTGGTGGTGGTGGTGGTGA
TGTTGTGGTTTGTAAGGTGAAGAGCGGCGAAAGGGCTGGCAGCTTGGTGT
CCCTCACGAATCCCTTTTGGCCCCTCTCCGCCGTCACGAGAAGGCGTTAC
TGGCCCTCTCTCCCCTGTCTGCCAGCTGCCGTGACATTGAAACAACAACA
ACAACAACAACAACAACAACAACAAAACAAGTACAACGACGTCGACGAAG
ACAACGGTTGTACAGACGAGATGCCCCTTACACGCTTGGTTGCGGTGCCC
CGTTTCGACCGTTTCGCTTGGCAGTCCGGGATGATGTCGTTCCCGAACTT
CAACGGCAACGACAAACCCCTCCAGTACGTGGACTTCCGGCTGCTGGCGG
AGGAGGCCGAGAGAGCCGGCGTCGACGTCCGATTCGTCTACCTCGCCCGA
TCGGCCAGGAGCATCCTCATCTCGGACACGCAACACAATCACTACGGGGG
AACGTGAGTGTTGTTTTTTTCTTGTGCGTGTGTTTGGTGGTCATCGGCTG
CGCTAAGCCTGCTGCTGGCCAATGAAAAGGCTTGCAGCGGGCCTGCGAGT
GGAAGAACGATACGTGTACATGTGTGTTTGCGTGTATTTAGTTTCGGTGG
CATCGGCGGCGCTAACTAGCCCGGTTTGTGTCAATGCCTCGGTCTCGAGG
CATCCAAACGCGCGAACCTCGCTCGCAGCAGTTCTGTGGATGTTCCATCA
TCGACCGGGCTAGTTAGGTTGATCAAGAGTGCGTCTATAGCGGTGTCGGC
AGCAGGAAGAAGCCAGCCTCTCCCGAAGTGCCTTCTGCGTTGTGTTTCTA
CTCAGCATCGACCACGCTACGTATGCGGCTGACGAACGACCAGTGGCTGA
CCAATAAAAAATCAGGTGTCCGTTCACACCGGGCGGAAATGCGAGTAGTA
ATTGCGAGGTCTCCCGAATTATAGCCACAAACGAGTCTAGCGAGCTTGGT
GCGGAAGATTGCTGTCTACGGCACCCTTTTGCGGCGGAGTGCATCGTCAC
TACGCGCCGCTGCCGGAGACGTACCCGCTGCTTCCACAGGGTGACGGCCC
TGGCAAGATCTAATCAGCCAACAGCCGAATTTGGAGTTTGTGATGGGATA
TCAATCTTCCATGTCCATGCCGCGGCTTGTCGCATAGCATGGACGCCCAC
CAAGCCAGGTGTTCGATTGGCTTTCTTCGTTCCTCACCCCAGATAACGGC
CTCTCGAGCCCTCAAAGGCAGGAGGCGCTATCGTGTGCCCCTCTGTTTCG
CTTCATGGTTTCCCCGGTGTCGAGCGTTTTGACCAGTGCCATCACACACA
CACGCACACACACACCCTTGGTTGGAAAGCGTGTTCACGTTTTTTTTGTC
CCTCTACAACATTAACTGGCGTATTTTTCATTGCCCAGCACGGTCGATGC
TCATCCAAACACACACACGCACACACGCGCGCGTGCGCGTTTTGCTCGAC
AACGGCAACGGCAACATACAAGACTGGCGTCTTCTCATTGGTCAACCGGT
CAGCGCGGTCGATGCTCATCCAAATACGCGCGCGTGCGCGTTCTGCGCGA
CAACAATAACGGCAACCAGGCAGTCGTATTTTCATTGGCCGGCTCGATCG
ATGGGAACACGCGTGCGTTTTTTTTTTCTCGGACAACCGGCAATCAGGTT
CATGAGGGAATCCCGAGCCCTCATCAACAACGCGGCCGTCGTAGAGTCCA
CCTTCCAGGAGCTGGGCCCGGGCTTCGCCACCTGCTTCCGGTACGAGAGC
ATGTCCGACCCGGAGCAGGCGCACCGCGTGGCGCGCTTCATCGCGCCCGA
TGAAGACACTGCGCAGCACCTCGAGGAGAAGATGCTGGAGAACGTCAAGC
CGGGGTCGGCGTCGCCGCAGCCGGGGTCGAAGCCGTCCAATCCGACGATG
GAGTGGACAAAGCAACAGGTGTGCTTGGTAGGGAGGGTTTTTGTCGGTGT
GATTTTGTTGTTGTTGTTTTTCTCCCCCTGTCTCGTCTTCTTTTATTTTT
CATCTCTCACGCGTGTGCCTTTGCTGTTGGTTCTCAGACATGTTGCTTTT
TGAGCCTGTCGTTGGGCTGACTCTTTTTCGTGCATCAGTGCGTTTGTCCA
TGGCGCAGTAGCAGCAGCGTCGGCAGATTCCGTGATAATATCATCCAAGT
GCCATAGACAACCATGGTAGAGAGAAGGGTTGACTTCATACGTCGTTTTC
TTGTTCTCTTTTTGCACGACGACCTCAACATTTTTTGGTGTTTTCCATGT
GTGTACACGGTGCCCGAGTATTCATCCACCGGGGACAAATGCACGAATCG
TCACAGGTACCACCGAATGAAAATGCACCCGGAAGAGCTTTCCGCAAGAC
AGCTCCACGTTTGTACACTTACGCATACCCGTCCCCCAAACGCACGTACC
CTCCTGATACAATCTCGTGCGCTATTGTGCTTGACCCCTGCCCGCGCTTC
TATGAAGCTCATTCACCCGCATGTTCCATGTGTGAATCTTGCCAAACATG
GGGAACAAACACGCCCCACATGTCTACATCCAATTTTGTTTGGATTTTCT
CCGGCGATATCCTCCAAAGTTTGGCCTTCGGCGCTCTACTCACCTCAAAG
AAACGATTCCGTTCAATTTTTTCATGGTACCACGCTGTAGAGACATGCCT
AAGGTTGCTCTAGAGGGTCGGCCACATTTTGGGCTGCCACTACAGCAGGA
ATTGTTGACGAATGACGGTCCGTCTCATAGGAATTCGGCCGCCGTGGAGG
CTCCGTGTGATCGATCGATGCCTCGCCGTAACCAAAAAAGAAATAACGCT
TTTTGCGAGGACTTGCAACACGGGTGGAACATACAGAATTGATGCAACGA
CGACATCCCCTCCCCGCGCCCAACCGCTGTACCCCCCTTGAGTCGGACAA
CATCTTCGTATGTAAGCCCTCTCTCACCTCTCTGTCTGTGTCTGACAACA
TATCCGTACCTTCGTGTATTCTCCTGTTTCCTTGAACCCGCCGCTCGCTC
TGCCCCTCCATGCCTGCAATCGGGGCAACTCTTTTTCCAAAGGGACGGCT
TGCAAATGGCGCGATGAACTATCACCCGAAAGATCCTAGGTACGGCCCGC
ATCGCGCGAAGTACGACGGGAATCAGTTTCTCAAGGCGGGTACCGCGGAG
CGGGCGGCAGAGCTGGAGGCCGCGGCAGCGGAGGCGGCAGCGGAAGCGTC
AAAGGCGATCGAGGCGGAAAGGGCGAAAGAAGAGGCCAGAGACAGAGACA
GCTGGGACTTGTCGTTCGAGCTCGTGGTCGCGCGGCTCCAGCAGAAGCTG
GACAAGATCGAGGAGGTCGTGTGCACAACGATAGCGACGACGATGGGCAC
GAGCGACGGCTCCGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11494:17..3785+

>mRNA_Ecto-sp13_S_contig11494.1308.1 ID=mRNA_Ecto-sp13_S_contig11494.1308.1|Name=mRNA_Ecto-sp13_S_contig11494.1308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11494:17..3785+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGAAGGGCAGGCGACCATCGCTCAATTCGTGACGTGCCGCTCCAA
GTCCGGGATGATGTCGTTCCCGAACTTCAACGGCAACGACAAACCCCTCC
AGTACGTGGACTTCCGGCTGCTGGCGGAGGAGGCCGAGAGAGCCGGCGTC
GACGTCCGATTCGTCTACCTCGCCCGATCGGCCAGGAGCATCCTCATCTC
GGACACGCAACACAATCACTACGGGGGAACGTTCATGAGGGAATCCCGAG
CCCTCATCAACAACGCGGCCGTCGTAGAGTCCACCTTCCAGGAGCTGGGC
CCGGGCTTCGCCACCTGCTTCCGGTACGAGAGCATGTCCGACCCGGAGCA
GGCGCACCGCGTGGCGCGCTTCATCGCGCCCGATGAAGACACTGCGCAGC
ACCTCGAGGAGAAGATGCTGGAGAACGTCAAGCCGGGGTCGGCGTCGCCG
CAGCCGGGGTCGAAGCCGTCCAATCCGACGATGGAGTGGACAAAGCAACA
GGGACGGCTTGCAAATGGCGCGATGAACTATCACCCGAAAGATCCTAGGT
ACGGCCCGCATCGCGCGAAGTACGACGGGAATCAGTTTCTCAAGGCGGGT
ACCGCGGAGCGGGCGGCAGAGCTGGAGGCCGCGGCAGCGGAGGCGGCAGC
GGAAGCGTCAAAGGCGATCGAGGCGGAAAGGGCGAAAGAAGAGGCCAGAG
ACAGAGACAGCTGGGACTTGTCGTTCGAGCTCGTGGTCGCGCGGCTCCAG
CAGAAGCTGGACAAGATCGAGGAGGTCGTGTGCACAACGATAGCGACGAC
GATGGGCACGAGCGACGGCTCCGCATGA
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