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Homology
BLAST of mRNA_Ecto-sp13_S_contig1149.1306.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI) HSP 1 Score: 347 bits (891), Expect = 5.830e-102 Identity = 275/333 (82.58%), Postives = 275/333 (82.58%), Query Frame = 2
Query: 518 AAKGVAGSPGKAKAKKPASPKPGRAPVGGGKISLGNNNSNGGG--SQATIVGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKPSPGANGFSGDVEVVKGKPRKKTVKPKAAGAGAGGVEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDKKAEEGSGKPRXXXXXXXXXXXXXXXXXXXEQPARKSAMDVSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNED 1507
A KGVAGSPGKAKAKKPASPK G A V SQAT VGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKV XXXXXXXXXXXXXXXXXX GKPSPGANGFSGDVEVVKGKPRKKTVKPKAA AGAGGV G APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TDKKA EGSGKPR XXXXXXXXXXX EQPARKSAMD SDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNED
Sbjct: 62 APKGVAGSPGKAKAKKPASPKQGGASVXXXXXXXXXXXXXXXXXXSQATTVGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVEKRKGKAAKVRGRKGASXXXXXXXXXXXXXXXXXXTDAGKPSPGANGFSGDVEVVKGKPRKKTVKPKAADAGAGGVVGVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGTDKKAGEGSGKPRKXXXXXXXXXXXAAA----EQPARKSAMDGSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNED 390
BLAST of mRNA_Ecto-sp13_S_contig1149.1306.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE) HSP 1 Score: 312 bits (800), Expect = 7.420e-90 Identity = 302/327 (92.35%), Postives = 302/327 (92.35%), Query Frame = 2
Query: 650 QATIVGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKPSPGANGFSGDVEVVKGKPRKKTVKPKAAGAGAGGVEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TDKKAEEGSGKPRXXXXXXXXXXXXXXXXXXXEQPARKSAMDVSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNEDXXXXXXXXXXXXXXXXXXXXXXA----MAAADAIASLAG 1612
AT VGP PGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GKPS GANGFSGDVEVVKGKPRKKTVKPKAAGAGAG V G APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TD KA EGSGKPRXXXXXXXXXXXXXX EQPARKSAMDVSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNEDXXXXXXXXXXXXXXXXXXXXXX MAAADAIASLAG
Sbjct: 72 SATTVGPAPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKPSRGANGFSGDVEVVKGKPRKKTVKPKAAGAGAGRVVGVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDTKAGEGSGKPRXXXXXXXXXXXXXXA----EQPARKSAMDVSDEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNEDXXXXXXXXXXXXXXXXXXXXXXXXXXXMAAADAIASLAG 394
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 358.2 |
| Seed ortholog evalue | 5.3e-96 |
| Seed eggNOG ortholog | 2880.D8LDU9 |
| Model size | 1613 |
| KEGG ko | ko:K14436,ko:K14437 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| EggNOG free text desc. | helicase activity |
| EggNOG OGs | COG0553@1,KOG0384@2759 |
| EC | 3.6.4.12 |
| Cds size | 1293 |
| COG Functional cat. | KL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03036 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462602.7045858-UTR-Ecto-sp13_S_contig1149:14248..14320 | 1681462602.7045858-UTR-Ecto-sp13_S_contig1149:14248..14320 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1149 14249..14320 + |
| 1681462602.7177017-UTR-Ecto-sp13_S_contig1149:15278..15525 | 1681462602.7177017-UTR-Ecto-sp13_S_contig1149:15278..15525 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1149 15279..15525 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462602.725311-CDS-Ecto-sp13_S_contig1149:15525..15747 | 1681462602.725311-CDS-Ecto-sp13_S_contig1149:15525..15747 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1149 15526..15747 + |
| 1681462602.7333417-CDS-Ecto-sp13_S_contig1149:16310..16596 | 1681462602.7333417-CDS-Ecto-sp13_S_contig1149:16310..16596 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1149 16311..16596 + |
| 1681462602.7421095-CDS-Ecto-sp13_S_contig1149:17112..17790 | 1681462602.7421095-CDS-Ecto-sp13_S_contig1149:17112..17790 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1149 17113..17790 + |
| 1681462602.7506425-CDS-Ecto-sp13_S_contig1149:18525..18553 | 1681462602.7506425-CDS-Ecto-sp13_S_contig1149:18525..18553 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1149 18526..18553 + |
| 1681462602.7598195-CDS-Ecto-sp13_S_contig1149:18565..18644 | 1681462602.7598195-CDS-Ecto-sp13_S_contig1149:18565..18644 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1149 18566..18644 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1149.1306.1 >prot_Ecto-sp13_S_contig1149.1306.1 ID=prot_Ecto-sp13_S_contig1149.1306.1|Name=mRNA_Ecto-sp13_S_contig1149.1306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
MDGGGGNEAVVKAATAAAAAAAEASSAPLPPQKQQQQQQPAKKKKRPPSQ EAASPGGTPSSRKKKKAAKGVAGSPGKAKAKKPASPKPGRAPVGGGKISL GNNNSNGGGSQATIVGPVPGGVSGSSIYCVCHSSDEGFMVECSDGTGGCG GWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVEKRKGKAAKGR GRKGASSSPSSTQPPPSPPPSSSSATGKPSPGANGFSGDVEVVKGKPRKK TVKPKAAGAGAGGVEGAAPPAAGAAAAAAGMPPPSSKPKLKRRRSSGGSS SAGGKGTDKKAEEGSGKPRKPKLKRQRSAAAAVAAAAAEQPARKSAMDVS DEDDSWGEESVDEDGRGEKGARASAYSTRDRKGRVTYVEEASDNEDDYLT DDDDNGGGDVSSSKRGSAAMAAADAIASLAG back to topmRNA from alignment at Ecto-sp13_S_contig1149:14249..18644+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1149.1306.1 ID=mRNA_Ecto-sp13_S_contig1149.1306.1|Name=mRNA_Ecto-sp13_S_contig1149.1306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1149:14249..18644+ (Ectocarpus species13 EcNAP12_S_4_19m) GCAAGGCGTGTGCTTGCGCCAGGAGTGAATGCCATCGGAAGCCCTGGAAA
GGGCCGGAGTGCTACGGGGAAGGTGAGCGTGTTTGCTGTGTGTCCCGCGC
TGCGTTCGAGAGAGAGCTGGGTCGTCTTTCGAGCAATAACTGGTGGGAGA
GGGGAGGCGAGTTGCGGCGAGGTTGTCGCATTTTTTCTGACGTGCGAGAT
GCTGTCTTATAGAAAGTGGCGGGTTCGTAGCGCCCCCCCGCGCCGCTTGT
GGCCTGCGGCGGGCAGCTGCGGCAGCGCACAGACAGGACCTAACAAGATT
TTCAAACTTGCGGCATGCTGTTTTCTCAGGAGCGAAAGGATAGTGTACAC
ACATGCGCGATCGGCTGTGCGATGTCGAGTTCCACCACAACGTGCGTAGC
CTGTGGGGGTTATTTTTGCAAACGTGGTGTGTGTGTGTGTGTTTTTGTGT
CTGAATCCGTGTCTATCTGGTTGGGCACCCATCAGCAGCAGTCAGCATGG
GCTGAAGCCATGCTATTCCGATGTTCACCGGCAAGGATCGTCCAGCGGAT
AGCGCTATTCCCTCCGCCGTGGTGTGCTTGGTTACACCCCTGTCGATTTG
TTTGGAGAGCGACTTCTGCTGCATGGGTTGGTTCTGGTTGGTTCGCTGAA
CGAAAGATGCGCTTTACACGGCGGCATCTGGTACACCCGCATGTTCGTTG
ACTAAGCTTGGTGGAGTGGCCATGCCTCCCGCAAACCTCAGCAATGTTCT
TGCTCCGTGAGGTTGAAACAGCACACGACCTCTTGTTTCATGAAATCCAA
ATCCACCACACAACAAGACGAACTACGTATCGCTTGACTATTTAGTCCAC
ATCTAGACTACATGTAATAAGTATGATACGGTGTAACTCGAGGATCACGC
GTGATGATGTGAGAACTCACCCTCTCCAATGCCTCCGTACAAGGTTCCGA
TTTGGCTGTTTCTGTGAGTAATGCTGCAGTGCTCCAGACCTCAAGACCCG
CCTGTGTCTCCGCGCGTCTTGTTTCAGCAGCAGCAGCACCGGTCCCACCG
ACAACAATATAATCTAGGCTGGTCACCACAGGCATCTGTTCTCCGACGGT
GGTCGGGGGGGGGTGTCTGCCTACAGGAAAGCGGGGCATGATTCGGGTGG
ATCGCACGCCATCTGCATGCTTCTCGCGGCTGGCTACGGGTACAAGGACG
TAGCGTTTGCAGATAGCAGATACATTTAGGAGCAGCACCCGCAGCAGCAG
CAGCCGGTCGTGCTCGGGCGAGAGAGGATGGACGGCGGCGGTGGGAACGA
GGCGGTGGTGAAGGCGGCGACCGCAGCGGCGGCGGCGGCGGCGGAGGCGT
CGTCGGCACCGCTGCCGCCACAGAAGCAGCAGCAGCAGCAGCAGCCGGCG
AAGAAGAAGAAGCGACCCCCCTCCCAGGAAGCGGCGTCGCCCGGCGGGAC
CCCCTCATCGCGGAAGAAGAAGAAGGCCGCCAAGGGGGTCGCTGGATCGG
TACGTTTTCCGTCGGTGTACCTTTGCAGTACATTTGTTGTTTGTTTTGTG
GGATATGCAAGAGAAGAACAGTAGTAGCGTGCTTTCCCCCGTTGGTCGAG
GTGGGAGTTCTAAATTTTCGGTGTTTTTTTTCTCTGAACACGACGGCTCG
CACCAGGACCGCAGCAGTAGCATGAGCGATCCATGAGCGCTGCAGCAGTA
CTCTCCGCACGTCCTGTCTTGATAACATACTCTCAACCCTCGCGCGCGGC
GAAAGGCGATTTGTTGCACGACCGCTTTAGCTGGCGTTTCCACTACCTGG
AACAAGGCTCATCTTGCTTCGACCTGTAGACCTCGCGTTGGAGTGACCCC
TTGCCCCGGCTGTGCAGCGCGCTATGATAGTAGTCTACGATATGCCCCCC
CCCACCCCCTGGTCCGGTGAGAACCCGGCGTGCTACGTCCCGGCTCTGTA
GGGATGCGAGGATAATGGTTTAACGACTACGGCATGCACGACTATGATAC
ACCTCCTCACCCCCTCGAAATCAAAGACTGACCCCCCCACCCCACCCGAC
GCTCCCCAAAAGCCTGGCAAGGCTAAAGCGAAGAAACCCGCCTCTCCAAA
GCCGGGAAGAGCACCCGTCGGCGGGGGTAAGATCAGCCTAGGCAACAACA
ACAGCAACGGCGGGGGCAGCCAGGCTACTATCGTTGGTCCGGTGCCGGGG
GGCGTGTCCGGGAGCTCGATCTACTGCGTCTGCCACAGCTCGGACGAGGG
TTTTATGGTGGAGTGCTCCGACGGGACGGGGGGCTGCGGGGGCTGGTTCC
ACCCGGAGTGCTGCAACCTCGAGCTCAGCCCGGAGCAGCGGCAGAAGAGT
GAGCTTTCGTGTTGTGCTGTGCTGTCCGGGGGATGGGGGGGGAGGGCAGG
GGGAGGCACACACTCATTGTTTTGCATCCTTAGCGAATACACCATTGACC
ACGCGTCCTCGAGAGGACGGAGCATGGGGGGGGGAGGGGCGGGGGGGGGA
GGCAGAGGAAGGTCCTTGCTGGTGTGCATACCATTCATTGGTGTGGCGTC
AGTGGCTCCTACGTCGATCCCTGCGATTGGGCTTGGTCCTTTGTGATCTG
CCGATTATTTTGGAAGGCTTTTGTACAATCAAGCTTGTGCCGGTCTGCGG
TATGGGTTGAATTTTGTGTTTGTTGGTTTGTTGGTCGGTTTACGAACGGT
GGGGCCAAGTGTTCCACCGCGAACCCGATTGTAGGTATTCATGTTTTTGT
GTTCATGTTAATCTCGGGGAAGAGAGATTTTTTCCCTCCACCTCCTCCTT
ACCACGAACTCTCCTCCCACCGCCGCTACGCGTCCGCGTGCCGGCCTGCC
TGCCCACCCCCCAGACGCCCTGAAGAAGTTCAAGTTCGTGTGCTCACTGT
GCGTCAAGGTCCGGCTGAAGGTCGAGAAGCGCAAGGGGAAGGCGGCCAAA
GGCAGAGGTCGCAAGGGCGCGTCGTCATCACCGTCATCGACACAACCGCC
GCCGTCGCCGCCTCCGTCGTCTTCAAGCGCCACCGGCAAGCCTTCACCAG
GCGCCAACGGCTTCAGCGGCGACGTGGAGGTGGTGAAGGGCAAGCCAAGG
AAGAAGACCGTGAAGCCGAAGGCCGCTGGCGCTGGAGCGGGCGGGGTAGA
AGGGGCCGCTCCGCCTGCGGCGGGGGCGGCGGCGGCGGCGGCGGGGATGC
CGCCCCCTTCCTCCAAGCCAAAGCTCAAGCGCCGGCGCTCTTCTGGCGGT
AGCAGCAGCGCTGGTGGCAAAGGCACCGATAAGAAAGCTGAAGAGGGCAG
CGGTAAGCCGCGGAAGCCGAAGCTCAAGCGGCAGCGGTCGGCAGCGGCGG
CGGTGGCGGCGGCGGCGGCAGAGCAGCCGGCCAGGAAGTCGGCGATGGAT
GTCTCGGACGAGGACGACTCCTGGGGGGAGGAAAGCGTGGACGAGGACGG
GAGGGGAGAGAAAGGGGCCCGCGCCTCGGCGTACAGCACGCGGGACCGGA
AGGGGAGGGTGACGTACGTCGAGGAGGCCTCTGACAACGAGGGTGAGTGG
GAGCGGGGGACGGGAGAAAATGTTCGGGGTCGACTTGATAAGGGTAGGGG
TGAGGGGGGGGGAAGGGGGTACATCGTGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGAGAGGTTGCGCGTGTAGCGATGGTGTTGATTTCAGCTAA
TAACTGGTACGTACCAGCACCCGTGATGCAGGAGCAAGGTGATGTTGTTG
CGTTCGTAGTGAAACTGGAAAGTGTTCTGGACGGATGGGCAAAGGTTTTT
GTATAGCTTTAGATCGGTTTTGCGGTCTCGGCGGTTCGATTACGCCCTAC
GAGTTACCCCACAACTGGCCACCATCATTACCCCTGAGCGGAAAGCAGAT
GACAACCTACGCGGCGAATGAAAAACAGAAGAGAACGAGCACCGCCGATT
TCCACACACGCGCTTCAGACGTTCATTTTTTTGTCAAGCCCGCTTTTTTA
ATGTAATCGTCGGAGGGTACATACGCGAATGTATTCGAGATATTGTTTCG
CTTGTAGGCGGCATCTTCCCGCCCTATGTGTTCTCGCGATACATGCACAT
GTAGTTGGAATTCCTCCCTCCCTCCCCCACCGACGAAAGAAAAAACTTTT
TAAGAGAAGCAAACTCCCGCCCTGCCGTGCCGCATCGGACCAAGACGCCG
TTCACGCAGCCCCGCTCGCCCCCACCGTTCGCCCCGCCCCGCGACCGTAC
CGTTGGCGCGCCGTTGAACGAGATCAGACGACTACCTCACCGATGACGAC
GATAACGGCGGCGGCGGCGGCGGCGGCGACGTCTCCTCTTCCAAGCGGGG
GTCCGCGGCAATGGCCGCCGCCGACGCCATCGCCTCTCTCGCCGGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1149:14249..18644+ >mRNA_Ecto-sp13_S_contig1149.1306.1 ID=mRNA_Ecto-sp13_S_contig1149.1306.1|Name=mRNA_Ecto-sp13_S_contig1149.1306.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1149:14249..18644+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGACGGCGGCGGTGGGAACGAGGCGGTGGTGAAGGCGGCGACCGCAGC GGCGGCGGCGGCGGCGGAGGCGTCGTCGGCACCGCTGCCGCCACAGAAGC AGCAGCAGCAGCAGCAGCCGGCGAAGAAGAAGAAGCGACCCCCCTCCCAG GAAGCGGCGTCGCCCGGCGGGACCCCCTCATCGCGGAAGAAGAAGAAGGC CGCCAAGGGGGTCGCTGGATCGCCTGGCAAGGCTAAAGCGAAGAAACCCG CCTCTCCAAAGCCGGGAAGAGCACCCGTCGGCGGGGGTAAGATCAGCCTA GGCAACAACAACAGCAACGGCGGGGGCAGCCAGGCTACTATCGTTGGTCC GGTGCCGGGGGGCGTGTCCGGGAGCTCGATCTACTGCGTCTGCCACAGCT CGGACGAGGGTTTTATGGTGGAGTGCTCCGACGGGACGGGGGGCTGCGGG GGCTGGTTCCACCCGGAGTGCTGCAACCTCGAGCTCAGCCCGGAGCAGCG GCAGAAGAACGCCCTGAAGAAGTTCAAGTTCGTGTGCTCACTGTGCGTCA AGGTCCGGCTGAAGGTCGAGAAGCGCAAGGGGAAGGCGGCCAAAGGCAGA GGTCGCAAGGGCGCGTCGTCATCACCGTCATCGACACAACCGCCGCCGTC GCCGCCTCCGTCGTCTTCAAGCGCCACCGGCAAGCCTTCACCAGGCGCCA ACGGCTTCAGCGGCGACGTGGAGGTGGTGAAGGGCAAGCCAAGGAAGAAG ACCGTGAAGCCGAAGGCCGCTGGCGCTGGAGCGGGCGGGGTAGAAGGGGC CGCTCCGCCTGCGGCGGGGGCGGCGGCGGCGGCGGCGGGGATGCCGCCCC CTTCCTCCAAGCCAAAGCTCAAGCGCCGGCGCTCTTCTGGCGGTAGCAGC AGCGCTGGTGGCAAAGGCACCGATAAGAAAGCTGAAGAGGGCAGCGGTAA GCCGCGGAAGCCGAAGCTCAAGCGGCAGCGGTCGGCAGCGGCGGCGGTGG CGGCGGCGGCGGCAGAGCAGCCGGCCAGGAAGTCGGCGATGGATGTCTCG GACGAGGACGACTCCTGGGGGGAGGAAAGCGTGGACGAGGACGGGAGGGG AGAGAAAGGGGCCCGCGCCTCGGCGTACAGCACGCGGGACCGGAAGGGGA GGGTGACGTACGTCGAGGAGGCCTCTGACAACGAGGACGACTACCTCACC GATGACGACGATAACGGCGGCGGCGACGTCTCCTCTTCCAAGCGGGGGTC CGCGGCAATGGCCGCCGCCGACGCCATCGCCTCTCTCGCCGGG back to top
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