mRNA_Ecto-sp13_S_contig11488.1302.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11488.1302.1
Unique NamemRNA_Ecto-sp13_S_contig11488.1302.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.520e-76
Identity = 132/165 (80.00%), Postives = 137/165 (83.03%), Query Frame = 3 
Query:   69 QTAEDQQGTRE----VDDMVDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSM 551
            QT  DQQ  R+     DD  DSKKTW+APPGTALD+LMLHLHLGGVAC GRLTS SHWDS+SL AHGIIIRTWCGASMGGLDPD  E DE T LIELHG LGRKLIRGVMDFRV SEYSPSLLALLEV  RGPIVGAEDA GTT G GDWQC INGA TAA+LSM
Sbjct:  437 QTDTDQQTARKRRRGTDDKADSKKTWYAPPGTALDELMLHLHLGGVACAGRLTSYSHWDSLSLPAHGIIIRTWCGASMGGLDPDSLECDEATRLIELHGTLGRKLIRGVMDFRVSSEYSPSLLALLEVCWRGPIVGAEDASGTTYGPGDWQCDINGAHTAAMLSM 601
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: A0A6H5K932_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K932_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 6.920e-67
Identity = 126/200 (63.00%), Postives = 143/200 (71.50%), Query Frame = 3 
Query:   69 QTAEDQQGTRE----VDDMVDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPHGRGAGS*RY*RERRNR*NPDRVQRGV 656
            QT  DQ+  R+     DD  DSKKTW+A P  A+D+LMLHLHLGGVACTGRLTS S+WDS+SL AHG IIRTWCGASM GLDP++ E DE T LIELHG LGRKLIRGVMDF + SEYSPSLLALLEV  RGPIVGA+DA GT  G GD QC ING  TAA+LSM E+     H        Y   R+N  + +RV  G+
Sbjct:  202 QTETDQKTARKRRRGADDTADSKKTWYATPANAVDELMLHLHLGGVACTGRLTSYSNWDSLSLPAHGTIIRTWCGASMDGLDPNVLECDEATRLIELHGTLGRKLIRGVMDFCLSSEYSPSLLALLEVCWRGPIVGAKDASGTAYGPGDCQCDINGEHTAAMLSM-ENLPAFTH-------MYESARKNAASRNRVFAGI 393
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: D7FWV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV6_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 2.270e-62
Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 3 
Query:  129 TWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            TW+APPGTALD+LMLHLHL GV+C+GRL++ SHWDS+SL AHGI IRTWC ASMGGLDPD FE D+ T LIELH ALG K  RGV+DFRV S+YS SLLALLEV  RGPIVGAED  G++ G  DWQC INGA TAA+++M E+  V  H
Sbjct:  259 TWYAPPGTALDELMLHLHLVGVSCSGRLSNYSHWDSLSLPAHGITIRTWCSASMGGLDPDEFEPDQATRLIELHNALGLKFYRGVLDFRVSSQYSQSLLALLEVCWRGPIVGAEDVSGSSYGREDWQCDINGAHTAALMNM-ETVPVFGH 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.870e-62
Identity = 106/155 (68.39%), Postives = 123/155 (79.35%), Query Frame = 3 
Query:  114 VDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            V   KTW+APPGTALD+LMLHLHL GV+C G+LT+ S WDS+SL AHG++IRTWC ASMGGLDPD FE D+ T LIELH ALG K  RGV+DFRV S+YS SLLALLEV  RGPIVGAEDA G++ G  DWQC INGA TAA+++M E+  V  H
Sbjct:  420 VAESKTWYAPPGTALDELMLHLHLAGVSCKGKLTNYSRWDSLSLPAHGVVIRTWCSASMGGLDPDDFEPDQATRLIELHNALGLKFHRGVLDFRVSSQYSQSLLALLEVCWRGPIVGAEDASGSSYGREDWQCDINGAHTAALMNM-ETVPVFGH 573
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: D7G6J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J5_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 6.210e-62
Identity = 106/151 (70.20%), Postives = 122/151 (80.79%), Query Frame = 3 
Query:  126 KTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            KTW+APPGTALD+LMLHLHL GV+C+GRL++ SHWDS+SL AHGI IRTWC ASMGGLDPD FE D+ T LIELH ALG K  RGV+DFRV S+YS SLLALLEV  RGPIVGAED  G++ G  DWQC INGA TAA+++M E+  V  H
Sbjct:  258 KTWYAPPGTALDELMLHLHLVGVSCSGRLSNYSHWDSLSLPAHGITIRTWCSASMGGLDPDEFEPDQATRLIELHNALGLKFYRGVLDFRVSSQYSQSLLALLEVCWRGPIVGAEDVSGSSYGREDWQCDINGAHTAALMNM-ETVPVFGH 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.160e-61
Identity = 106/151 (70.20%), Postives = 122/151 (80.79%), Query Frame = 3 
Query:  126 KTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            KTW+APPGTALD+LMLHLHL GV+C+GRL++ SHWDS+SL AHGI IRTWC ASMGGLDPD FE D+ T LIELH ALG K  RGV+DFRV S+YS SLLALLEV  RGPIVGAED  G++ G  DWQC INGA TAA+++M E+  V  H
Sbjct:  258 KTWYAPPGTALDKLMLHLHLVGVSCSGRLSNYSHWDSLSLPAHGITIRTWCSASMGGLDPDEFEPDQATRLIELHNALGLKFYRGVLDFRVSSQYSQSLLALLEVCWRGPIVGAEDVSGSSYGREDWQCDINGAHTAALMNM-ETVPVFGH 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 5.110e-60
Identity = 106/155 (68.39%), Postives = 122/155 (78.71%), Query Frame = 3 
Query:  114 VDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            V   KTW+APPGTALD+LMLHLHL GV+C G+LT+ S WDS+SL AHG+IIRTW  ASMGGLDPD FE D+ T LIELH ALG K  RGV+DFRV S+YS SLLALLEV  RGPIVGAEDA G++ G  DWQC INGA TAA+++M E+  V  H
Sbjct:  383 VSECKTWYAPPGTALDELMLHLHLAGVSCKGKLTNYSRWDSLSLPAHGLIIRTWFSASMGGLDPDDFEPDQATRLIELHNALGLKFCRGVLDFRVSSQYSKSLLALLEVCWRGPIVGAEDASGSSYGREDWQCDINGAHTAALMNM-ETVPVFGH 536
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.190e-58
Identity = 101/141 (71.63%), Postives = 112/141 (79.43%), Query Frame = 3 
Query:  129 TWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSM 551
            TW+APPGT LD+LMLHLHL GV+C GRLTS SHWDS+SL AHGI IRTWC ASMGGLDPD  E D+ T LIELH  LG K   GV+DFRV S+YS SLLALLEV  RGPIVGAE+  GT+ G  DWQC INGA TAA++SM
Sbjct:  451 TWYAPPGTVLDELMLHLHLVGVSCRGRLTSYSHWDSLSLPAHGITIRTWCSASMGGLDPDELEPDQATRLIELHNELGLKFYHGVLDFRVSSQYSQSLLALLEVCWRGPIVGAEEVSGTSYGPEDWQCDINGAHTAALMSM 591
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.250e-58
Identity = 105/155 (67.74%), Postives = 119/155 (76.77%), Query Frame = 3 
Query:  114 VDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            V   KTW+APPGTALD+LMLHLHL GV+C G+LT+ S WDS+SL A GIIIRTWC ASMG LDPD FE D+ T LIELH ALG K  RGV+DFRV S+YS SLLALL V  RGPIVGAEDA G+  G  DWQC INGA TAA+++M E+  V  H
Sbjct:  440 VSECKTWYAPPGTALDELMLHLHLAGVSCKGKLTNYSRWDSLSLPAQGIIIRTWCSASMGRLDPDDFEPDQATRLIELHSALGLKFYRGVLDFRVSSQYSQSLLALLGVCWRGPIVGAEDASGSCYGREDWQCDINGAHTAALMNM-ETVPVFGH 593
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 4.200e-56
Identity = 102/155 (65.81%), Postives = 118/155 (76.13%), Query Frame = 3 
Query:  114 VDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGIIIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*SEYSPSLLALLEVY*RGPIVGAEDAPGTTNGLGDWQCGINGAPTAAILSMGESADVHPH 578
            V   KTW+APPGTALD+LMLHLHL GV+C  RLT+ SHWDS+SL AHGII R+WC ASMGGLDPD FE D+ T LIELH     K  RGV+DFRV S+YS SL ALLEV  RGP+VGAEDA G++ G  DWQC INGA TAA+++M E+  V  H
Sbjct:  507 VSECKTWYAPPGTALDELMLHLHLAGVSCISRLTNYSHWDSLSLPAHGIITRSWCSASMGGLDPDDFEPDQATRLIELH-----KFCRGVLDFRVSSQYSKSLFALLEVCWRGPMVGAEDASGSSYGREDWQCDINGAHTAALMNM-ETVPVLGH 655
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11488.1302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFQ2_ECTSI1.520e-7680.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K932_9PHAE6.920e-6763.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV6_ECTSI2.270e-6270.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMS8_9PHAE2.870e-6268.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J5_ECTSI6.210e-6270.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV89_ECTSI4.160e-6170.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J754_9PHAE5.110e-6068.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE2.190e-5871.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE2.250e-5867.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2B8_9PHAE4.200e-5665.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11488contigEcto-sp13_S_contig11488:258..2816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score177.9
Seed ortholog evalue2.2e-42
Seed eggNOG ortholog2880.D8LFQ2
Model size717
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E3IK@1,2SAKM@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-01_001310.1
Cds size291
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462602.3923118-UTR-Ecto-sp13_S_contig11488:257..2921681462602.3923118-UTR-Ecto-sp13_S_contig11488:257..292Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11488 258..292 -
1681462602.4059002-UTR-Ecto-sp13_S_contig11488:1472..15631681462602.4059002-UTR-Ecto-sp13_S_contig11488:1472..1563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11488 1473..1563 -
1681462602.417247-UTR-Ecto-sp13_S_contig11488:2225..24151681462602.417247-UTR-Ecto-sp13_S_contig11488:2225..2415Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11488 2226..2415 -
1681462602.4459116-UTR-Ecto-sp13_S_contig11488:2706..28161681462602.4459116-UTR-Ecto-sp13_S_contig11488:2706..2816Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11488 2707..2816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462602.4330866-CDS-Ecto-sp13_S_contig11488:2415..27061681462602.4330866-CDS-Ecto-sp13_S_contig11488:2415..2706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11488 2416..2706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11488.1302.1prot_Ecto-sp13_S_contig11488.1302.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11488 2416..2706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11488.1302.1

>prot_Ecto-sp13_S_contig11488.1302.1 ID=prot_Ecto-sp13_S_contig11488.1302.1|Name=mRNA_Ecto-sp13_S_contig11488.1302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MVDSKKTWHAPPGTALDQLMLHLHLGGVACTGRLTSSSHWDSMSLAAHGI
IIRTWCGASMGGLDPDLFEYDEDTHLIELHGALGRKLIRGVMDFRV*
back to top

mRNA from alignment at Ecto-sp13_S_contig11488:258..2816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11488.1302.1 ID=mRNA_Ecto-sp13_S_contig11488.1302.1|Name=mRNA_Ecto-sp13_S_contig11488.1302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11488:258..2816- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAAGCGGATGGTGACACCAGGACCCTTTGTTGCGCGGACATGACAGA
GGCAATCCTCGCCTCTACCAGACGGCGGAGGACCAGCAGGGCACGAGAGA
AGTCGATGACATGGTGGACAGCAAGAAGACCTGGCACGCACCTCCCGGTA
CGGCTCTGGACCAGCTCATGCTTCATCTCCACCTCGGTGGCGTGGCTTGC
ACGGGTAGGTTGACCAGCTCCAGTCACTGGGATTCGATGTCGTTGGCGGC
GCACGGCATCATTATTCGAACCTGGTGCGGCGCGAGCATGGGCGGACTGG
ATCCAGATTTGTTTGAATACGACGAAGATACTCATCTAATCGAGCTGCAC
GGCGCGCTCGGGCGTAAGCTCATTCGCGGTGTGATGGATTTTCGGGTCTA
GAGTGAGTACAGCCCGTCTCTCCTCGCGCTACTCGAGGTGTATTAGAGGG
GACCTATCGTTGGGGCAGAAGACGCACCGGGCACAACCAACGGACTGGGG
GACTGGCAGTGCGGCATCAACGGGGCGCCCACGGCAGCAATACTGAGCAT
GGGGGAATCTGCTGACGTTCACCCACATGGACGAGGTGCAGGTATTCGAC
GGCCACAACATTGAGAATTGGACGTTGTACGTCGTCCGCCTGGACGCTGC
TGGTGACCCCGAAGTGTGCCTGAATTCTGATGTAACGGCAGTCTTTGGTC
GGAACTACAAGCGATGTTTGGCGCTCGTGCACACCCCCGCCCCACACCGC
GTAACCCACTTCGTACAATCTGCGAGGACGGTTCAAAAGTGCCACTTACC
CGGCCTCGTGCAGGATCTGCTGGCCCGGGATCTTAACAAATTTGCCGTTG
TTTCGTTAGGGTAAATCATCATACATCATTTTGGAGCTGCACTCTGACAT
AGACTATTCCAGAACCGAAGCACACAGCGTCAGCTTGAAAAGATTAACGC
GACGATCATAGCAGTCGATACAAGGTGTGTGGTCTCAAATGGGCGGGCTG
GTTCAGAATCGAATCGAAGACAACCGCGTACTTTTGGTTGCCGGGCTCGA
GCTCAAAAACGACGATGCTCGAAAACGACGCGGAGTGCAGTTTTCTCGCC
GAACGGTTACTGCTTGTGGTTGGACTCAGCTTGAGCTGGAAAGCGCGGTG
TACTTTAGGCAGCAACGGCCGCTCCTCGCCGGTAGAAGTTCGCCTTGCCG
GTACGACCCTGATATTCGCTTTGTGGTCGATACTGCTGTACCACCTCCAT
CAGGGTCATGAAGGTATTGACGTGAAAGAAGGAACCGTTGAAACCCTGAT
CGGGTACAACGAGGTGTACATGCAATACGACGACGACTCCGGAGGTGAGT
CGAAGAGGCGAGGATAGAGAGATATATTAGCTCAGCTTGTTTACACAACG
GTTCTCGGTGAGATACTGATTGGTGTACGGAAACGAAACATGAAAGGACC
CTGTACTAGCAAGGCGCCCAGCAACCGTGACCTCTTGACACGAAGCGCGA
AGCTATGCAGACATCAAGAGCCAAAATAGTATACCGCATGTCGCGTAAGA
TACGAACGCCCTGATCGATTCCCAAAACTTGACTACTCCATAGCCGTAAG
CGTGGCGGTGCCGAAAACAGCGGGGTTGGACCCGTCTCACCAAGAGCTTT
CCTAAATCGTACAATTTGGTTGCAGCATCCTGTTTGCCGCGAAGTGATTC
GAGCTTTGAAAACCGACCCAGGGGCTGTGATGTCTTTTGCATCCCACGTT
CGCACGACCTTCTGCGGCGACGATCGACAGATATTGTCTCGCCGCGAACT
TACCCCACGAAGGCGATCTTCAGAAGCAGGATCTTTCGTGACCCCGCCTC
TGCCGAGGGCTCTTAGCCGCGAGATGTTGTGATGCAGAATAAGATCCTCA
TTGAGCATATAGGTAGATTCGTCGCCCGCCTTGTGTACCCCTTCGAACAT
TATCTTGCTGGTGGCGATCGGTTCGAGGTGAAGCTGATGAGAAATTTCGA
CCCGTGAGAGGGCCCCTCTCTCGAGAAGAATCCATCGTTCTGTAGTCCCT
TCTCATGAAAAAGTCTCTGTAACCTAGGCGGTCTTTGGGGCCGCGCGCGC
GCACGCATGACTCCTTCGTTCGCTAAGGCTCGAACACGTGACTAACAGAC
AAAGCTGAGGGAGGCAATCGAGAGTGTATATCGCTGATGTGCATACCTGA
GATGAATTTTATGATTGCCTCAGTCGCGACAGGGTAAACAATCGTTGGCA
CAAGTCTTGATCAGCTGTGCAGCACTGGTTTAGATGCATCCGTGTTTGGC
AAAACCTAAAATAGGAATTCGCCTCCTCTGGGCGATGCCATGCACACTGC
GAGGCATTCTAGAAGCACGAGGGCGTGTACCCACAGCAGTACAAACGTTC
CCGATAGCGTGGAGCACTTCCGTCTCAGATTCAGACTTTGCATCAACCTG
CTGCGGCAGGCACTGAAGCAATCGCGAATCACTCAAGTAACAGCAACGAA
AAAAATCCAATCGTTTGTGGGCAGGCATTGGAAGCCGTGGTGACCGGAGC
ATCATCCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11488:258..2816-

>mRNA_Ecto-sp13_S_contig11488.1302.1 ID=mRNA_Ecto-sp13_S_contig11488.1302.1|Name=mRNA_Ecto-sp13_S_contig11488.1302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11488:258..2816- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACAGCAAGAAGACCTGGCACGCACCTCCCGGTACGGCTCTGGA
CCAGCTCATGCTTCATCTCCACCTCGGTGGCGTGGCTTGCACGGGTAGGT
TGACCAGCTCCAGTCACTGGGATTCGATGTCGTTGGCGGCGCACGGCATC
ATTATTCGAACCTGGTGCGGCGCGAGCATGGGCGGACTGGATCCAGATTT
GTTTGAATACGACGAAGATACTCATCTAATCGAGCTGCACGGCGCGCTCG
GGCGTAAGCTCATTCGCGGTGTGATGGATTTTCGGGTCTAG
back to top