mRNA_Ecto-sp13_S_contig11484.1298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11484.1298.1
Unique NamemRNA_Ecto-sp13_S_contig11484.1298.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: D8LLA6_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLA6_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 7.760e-63
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD
Sbjct:  411 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 505
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: W7T7M1_9STRA (Phenylalanyl-trna synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7M1_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.030e-57
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    4 IRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRF 282
            ++FKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP+DVRVIAWGLSLERPTMIKY I+NIRELFGHKA L+RT+ AP+C+F
Sbjct:   70 LKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A7S4J9M2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9M2_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.560e-57
Identity = 78/95 (82.11%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            ++R+KPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP++VRVIAWGLSLERPTMIKY I NIR+LFGHK ++ RT+TAP+CRF+
Sbjct:    4 KLRYKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRFE 98
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A835YKG3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG3_9STRA)

HSP 1 Score: 192 bits (487), Expect = 4.530e-57
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            Q+RFKPAYNPYTEPSMEIFGYHPDLK+WTEIGNSGMFRPEML PMGLP+DVRVIAWGLSLERPTMIKY I+NIRELFGHKADL RTK AP+CRFD
Sbjct:  408 QVRFKPAYNPYTEPSMEIFGYHPDLKRWTEIGNSGMFRPEMLRPMGLPEDVRVIAWGLSLERPTMIKYRISNIRELFGHKADLGRTKRAPICRFD 502
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A7S2Y5I1_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5I1_9STRA)

HSP 1 Score: 184 bits (466), Expect = 9.820e-57
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            Q+RFKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP++VRVIAWGLSLERPTMIKY I NIR+LFGHK ++ RT+TAP+CRFD
Sbjct:  145 QLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLQPMGLPENVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRFD 239
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: K0TQQ6_THAOC (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQQ6_THAOC)

HSP 1 Score: 181 bits (459), Expect = 1.060e-55
Identity = 80/95 (84.21%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            Q+RFKPA+NPYTEPSME+FGYHPDLKKWTEIGNSGMFRPEML PMGLP++VRVIAWGLSLERPTMIKY I NIR LFGHK DL  T+ AP+CRFD
Sbjct:  134 QLRFKPAFNPYTEPSMEVFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIDNIRNLFGHKVDLAMTRNAPICRFD 228
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A7S2XV42_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2XV42_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.710e-55
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            Q+RFKPA+NPYTEPSMEIFGYHPDLK+WTEIGNSGMFRPEML PMGLP++VRVIAWGLSLERPTMIKY I NIR+LFGHK D+ RT+TAPVCR+D
Sbjct:  237 QLRFKPAFNPYTEPSMEIFGYHPDLKQWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVDMARTRTAPVCRYD 331
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A6V2DUX8_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2DUX8_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.540e-54
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            Q+RFKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP++VRVIAWGLSLERPTMIKY I NIR LFGHK D+ RT+TAPVCRFD
Sbjct:  408 QLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPENVRVIAWGLSLERPTMIKYRINNIRALFGHKVDMARTRTAPVCRFD 502
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A7S2VEP6_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEP6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 6.700e-54
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 285
            Q+RFKPA+NPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEML PMGLP++VRVIAWGLSLERPTMIKY I NIR+LFGHK ++ RT+TAP+CRFD
Sbjct:  411 QLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLQPMGLPENVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRFD 505
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BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Match: A0A482RR57_9ARCH (Phenylalanine--tRNA ligase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RR57_9ARCH)

HSP 1 Score: 179 bits (453), Expect = 7.360e-54
Identity = 79/94 (84.04%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRF 282
            Q+RFKPAYNPYTEPSMEIFGYHPDLK+WTEIGNSGMFRPEML PMG P+DVRVIAWGLSLERPTMIKY I NIR+LFGHKAD+++ K AP+ RF
Sbjct:  226 QLRFKPAYNPYTEPSMEIFGYHPDLKRWTEIGNSGMFRPEMLRPMGFPEDVRVIAWGLSLERPTMIKYRIENIRDLFGHKADISKQKNAPIARF 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11484.1298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA6_ECTSI7.760e-63100.00Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
W7T7M1_9STRA3.030e-5787.10Phenylalanyl-trna synthetase n=1 Tax=Nannochlorops... [more]
A0A7S4J9M2_9STRA3.560e-5782.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A835YKG3_9STRA4.530e-5790.53Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus... [more]
A0A7S2Y5I1_9STRA9.820e-5785.26Phenylalanine--tRNA ligase n=1 Tax=Amphiprora palu... [more]
K0TQQ6_THAOC1.060e-5584.21Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thal... [more]
A0A7S2XV42_9STRA1.710e-5585.26Phenylalanine--tRNA ligase n=2 Tax=Bacillariophyta... [more]
A0A6V2DUX8_9STRA1.540e-5487.37Phenylalanine--tRNA ligase n=1 Tax=Ditylum brightw... [more]
A0A7S2VEP6_9STRA6.700e-5485.26Phenylalanine--tRNA ligase n=2 Tax=Amphiprora palu... [more]
A0A482RR57_9ARCH7.360e-5484.04Phenylalanine--tRNA ligase n=1 Tax=archaeon TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11484contigEcto-sp13_S_contig11484:382..1089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score208.8
Seed ortholog evalue1.2e-51
Seed eggNOG ortholog2880.D8LLA6
Preferred nameFARSA
Model size288
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0002161,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0052689,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.phenylalanyl-tRNA aminoacylation
EggNOG OGsCOG0016@1,KOG2784@2759
EC6.1.1.20
Cds size288
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462602.0855947-CDS-Ecto-sp13_S_contig11484:381..5281681462602.0855947-CDS-Ecto-sp13_S_contig11484:381..528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11484 382..528 +
1681462602.098884-CDS-Ecto-sp13_S_contig11484:948..10891681462602.098884-CDS-Ecto-sp13_S_contig11484:948..1089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11484 949..1089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11484.1298.1prot_Ecto-sp13_S_contig11484.1298.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11484 382..1089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11484.1298.1

>prot_Ecto-sp13_S_contig11484.1298.1 ID=prot_Ecto-sp13_S_contig11484.1298.1|Name=mRNA_Ecto-sp13_S_contig11484.1298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
QIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPKD
VRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD*
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mRNA from alignment at Ecto-sp13_S_contig11484:382..1089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11484.1298.1 ID=mRNA_Ecto-sp13_S_contig11484.1298.1|Name=mRNA_Ecto-sp13_S_contig11484.1298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11484:382..1089+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCCGCTTCAAGCCCGCGTACAACCCGTACACGGAGCCGTCGATGGA
GATATTCGGGTACCACCCGGACCTCAAGAAGTGGACGGAGATCGGCAACA
GTGGCATGTTCCGCCCCGAGATGCTCCTTCCCATGGGCCTTCCCAAGGTA
CTTTTTTTTTTTTTTTGCTGGTGTTGGATGGTGCTGCTGTTTTTTACCAT
TTTTGCATGTGCCGTGAGCAAGAGCGTGGTGTACTTTGTGTGGTGCGCGG
CATGTTTTGAAGGGTCGCCTGGGGCTGCTCTTGCCTTTTTGTGTGTGGTG
CTGCTGTTGTGTTTTTGGTGTGGTTGCCTTCTCTTCCATCCATATCCTTC
CGAAACACAAGTCTTGCCGTTGTCGTAAAGTGCGTTCTCGCGTAATTGTG
CCCAGCTGCTGTGAAGGCATGCGTGCATACCTGCGTGCATGCATACGTTT
GTGTCGCGCGAACCGAGTCGCGGTTGTTGCTGTGCATACGCCACTCTCCT
GTGTCTAAGTTTTCAACCCCCCCCCCCCCCCCCCCTGGCCACGTCTCCCG
CGTGCCCCCATGTCCAGGACGTGCGAGTGATCGCCTGGGGTCTGAGCCTG
GAGCGGCCGACGATGATCAAGTATGGCATCACCAACATCCGAGAGCTGTT
CGGGCACAAAGCAGACCTCAACCGCACCAAGACCGCTCCCGTGTGCCGTT
TCGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11484:382..1089+

>mRNA_Ecto-sp13_S_contig11484.1298.1 ID=mRNA_Ecto-sp13_S_contig11484.1298.1|Name=mRNA_Ecto-sp13_S_contig11484.1298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11484:382..1089+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCCGCTTCAAGCCCGCGTACAACCCGTACACGGAGCCGTCGATGGA
GATATTCGGGTACCACCCGGACCTCAAGAAGTGGACGGAGATCGGCAACA
GTGGCATGTTCCGCCCCGAGATGCTCCTTCCCATGGGCCTTCCCAAGGAC
GTGCGAGTGATCGCCTGGGGTCTGAGCCTGGAGCGGCCGACGATGATCAA
GTATGGCATCACCAACATCCGAGAGCTGTTCGGGCACAAAGCAGACCTCA
ACCGCACCAAGACCGCTCCCGTGTGCCGTTTCGACTGA
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