mRNA_Ecto-sp13_S_contig1148.1296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1148.1296.1
Unique NamemRNA_Ecto-sp13_S_contig1148.1296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1148.1296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1148contigEcto-sp13_S_contig1148:1139..8063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3340
Hectar predicted targeting categoryother localisation
Exons9
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1148.1296.1prot_Ecto-sp13_S_contig1148.1296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1148 1587..2406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462601.8148518-UTR-Ecto-sp13_S_contig1148:1138..11731681462601.8148518-UTR-Ecto-sp13_S_contig1148:1138..1173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 1139..1173 +
1681462601.8257737-UTR-Ecto-sp13_S_contig1148:1378..15861681462601.8257737-UTR-Ecto-sp13_S_contig1148:1378..1586Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 1379..1586 +
1681462601.866113-UTR-Ecto-sp13_S_contig1148:2406..32431681462601.866113-UTR-Ecto-sp13_S_contig1148:2406..3243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 2407..3243 +
1681462601.876234-UTR-Ecto-sp13_S_contig1148:3726..40591681462601.876234-UTR-Ecto-sp13_S_contig1148:3726..4059Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 3727..4059 +
1681462601.8856368-UTR-Ecto-sp13_S_contig1148:4315..45191681462601.8856368-UTR-Ecto-sp13_S_contig1148:4315..4519Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 4316..4519 +
1681462601.9024045-UTR-Ecto-sp13_S_contig1148:4675..47931681462601.9024045-UTR-Ecto-sp13_S_contig1148:4675..4793Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 4676..4793 +
1681462601.9173357-UTR-Ecto-sp13_S_contig1148:6396..65511681462601.9173357-UTR-Ecto-sp13_S_contig1148:6396..6551Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 6397..6551 +
1681462601.9291167-UTR-Ecto-sp13_S_contig1148:7045..80631681462601.9291167-UTR-Ecto-sp13_S_contig1148:7045..8063Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1148 7046..8063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462601.8390415-CDS-Ecto-sp13_S_contig1148:1586..16011681462601.8390415-CDS-Ecto-sp13_S_contig1148:1586..1601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1148 1587..1601 +
1681462601.8478448-CDS-Ecto-sp13_S_contig1148:1838..19891681462601.8478448-CDS-Ecto-sp13_S_contig1148:1838..1989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1148 1839..1989 +
1681462601.8565383-CDS-Ecto-sp13_S_contig1148:2140..24061681462601.8565383-CDS-Ecto-sp13_S_contig1148:2140..2406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1148 2141..2406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1148.1296.1

>prot_Ecto-sp13_S_contig1148.1296.1 ID=prot_Ecto-sp13_S_contig1148.1296.1|Name=mRNA_Ecto-sp13_S_contig1148.1296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
MIPQELHAKDMERMGFECLALDQDEVALSIAQSLKVDWRALAAPLPIVPG
EVSGPVVEQTECGAHPQGTSAPAVSSGRHGGGGRERVAMGGGLAGSSTPA
AVPETLAAGSGGVSGVAPWKHTSSEFEQGIVFFNPPVGRIFRV*
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mRNA from alignment at Ecto-sp13_S_contig1148:1139..8063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1148.1296.1 ID=mRNA_Ecto-sp13_S_contig1148.1296.1|Name=mRNA_Ecto-sp13_S_contig1148.1296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1148:1139..8063+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAGGGCACGGGAGCCAACGAGGCGGCGCACAGGTATCGACTGGCAGT
GTCTGGTGGTGTGAGGGCAGTCGTGGTGAGGGGTTTGTATTAATAGTGGT
ACTGCACCCCGCAGAAAAGGGGGGGGGAGAACGTATTTATGTTTTCGTCT
GACGAGGCATCTCCCGTGGTGTGGTCGAGGTAAGGGCTCGCCCTTTCTCC
TAATCATTGTATTGCCTGCCCGTAATTTCGGCGTTTTCAGCAAAGGTAAC
AAGAGAATCGCGGGAATCGCTTCGCGGATGAGCGAGGCGCGATCTGAGCG
TGAGATCTAGCTTTGGATTCACAACTACAACCGGGGCATCGACGAGAACC
GAGGCATCGCGCATCCGGACTTTCTCAAGCATTTCTGGGAGGAGAGATGC
CGCCAGCTAGCAGGGAACGTTGACGGCCCAGCACCCGGAGGGAACTTGAT
GATTCCACAGGAGGTAAGCCTGACTACCCGTGTTGGCTCACTCGCGTTCA
GGCGCAATCCCTGTGCTGGTAGTTCAGGCCCAAGAGTTGCATATGTATAT
TCCTTGGATACGTCGCTTGTTTCGTGAATGCACTCCTTTGGTGCTTTGGG
GAATTTCCAGGATTCACTGTTCAATCTCCGACTTGACGCCTTCGACAATC
AGCTTTGCTTTTACCCCGACTGCCACTCGCTGCATTCACTTGTTCGCCAG
CTGCACGCGAAAGACATGGAGCGGATGGGGTTCGAGTGTCTCGCTTTGGA
CCAAGACGAGGTTGCCCTTTCGATCGCCCAAAGTCTCAAGGTGGACTGGA
GAGCGCTAGCTGCCCCACTACCGATTGTCCCTGGGGAGGTCTCTGGGCCA
GGTATGTCTAGATATCTTGTATCCCCTCCTGCTCCTTTTACTTTGGCGCG
TAAGCTGAATGTGTGAAGCCCGGGAAACTCATTTGCTTTGGTCGTGGGTC
GTGTCTGCCATTTGTTTCAACAACGCCAATGCTCTGCACGTTACTTTTGC
AGTTGTGGAGCAAACCGAGTGCGGGGCTCACCCGCAGGGCACGTCCGCCC
CAGCCGTATCTTCCGGCAGGCACGGCGGAGGAGGCAGGGAACGTGTCGCC
ATGGGAGGCGGGTTGGCGGGATCGTCGACGCCTGCTGCTGTGCCCGAGAC
CCTGGCGGCTGGAAGCGGCGGTGTTTCTGGCGTGGCACCCTGGAAGCATA
CATCCTCCGAGTTTGAGCAGGGGATTGTTTTTTTTAACCCCCCGGTGGGA
CGTATCTTCCGTGTGTAAAGCGGTCATTTTCTGGGGACCGAGCCTTTCTG
GTCTTTTTTGTTTTTTTTGCAGAGTACCTTGCTGGAATAGGGGAAAATAT
TACTACTCGCGCGTTCCTCTTGCCTCTTCCGCCTGGAATAGGGAAAGTTA
TTACCTCTCGCGCGTTTCTCCCGCCTCTTCTGCCTGAACTCGTGCGTGTA
AATCTTACCCATAGTACGTGCAGCGAACGAGGTGTGTTCGATAGGTGCCT
GGGGCGCGGGCGTGATTGGTGTAATATACTCTCCCCGGGGCCGGGTTGAA
AATGGAGGCGGGGCCGGTCGGACCGAAATTGAGGGGACTCCCCGGCCCAA
TCAGGACAGTCGGGAAAAACGCACCTCCACAAGCCTAGTTGGGAAATCTA
TACTAAACCCTAGAAATAGGGTCAAAAATATCACGCCGCGTTCCTCGAGA
CCCGGCGGAATCGAGCTCGAGCCGTTGGTGCAGAGGGCGCACCTGCTTCT
TCGCCAACACACGCGGCCCTAGCGGGCACCCAGCCCCCCAGCGCGTGATG
GTCGCCTGCCGCGTTATCGCACTGTCTCGTGCGGATGCGCTGACCGCTGT
CGGTGCCTCAACCACAACGTCATCGGTCGTTCATGGCAGCACGCTCAACC
GCGGAGGCGGCGGTGCCAGGCTGTGGGGAAGGACGCACCACCCCAGCGGC
AGCTGCCCAGCAGAGACCCTAAGGAGCAATGGAGATGAGGGAAATGTGCC
CACCCTGGCGGGACGCCATGATTGCCTTCGGCATGGTCCGACATCTCCTG
GAGTCGATGCAGCGGACCGGCGTGCAACATGATGTGCCGTTTGCGGGAGT
CTCAGGTGGGAATGAGGCGTGGTGTTGGACGTGCGACTACATAGCAGGGT
TAGCACGGGGCAAGGGCCCGGGCAGCTTCCTCGTCGTGCCGAGTGTAGTG
TTGTTGGACCTTCTATCGCAGCAATGCTGCTGCTTCTGCTGCTGCTAGTA
CTCAAGCATGTATGTTGTGATGAGGAAATAGTTCCCGGTTCGGTGTTCCC
GGTCCGTTGTTCCCGGGCCTGAAGAGATGGCCGTGAGCGGACGCCTTTCA
CGTCACCGACTCTATGGTGGCAGGGTACAAGTACTACGCCCACGCAGCAA
GGTATCTGTGGCGTTTGAGCCTCCCTCTCAATACAAACGCTTTTCTTTCG
CGTATGCTTTGAAGGCTGCACACTGCTGTCCCTCGCCTCGTCGCCCTTCC
TCGTTCACCCGTAGCATGCACTGAATAGTACTCACAGCACCTTTCCCCGC
GGCTTCTTCTCAACTGCCGCCATCGGTTTGCTTTGCAGGGAGCTCGGCTC
GATCGTCGCTGACCAATGTGAGACGTTTTACAGTTGCGCTAATAGCCGCG
TGGAGTCCGGCCTTAGCGCTTCGGACGCAGCGGGACCGGGCACACCGCCG
CCGCCGCCAACAGCACGCGCGTCAACACCTGCAAGCATCTCGCGGACCAG
CAACTGAACAATGGAACTGAGCAACGGGGCTGCAGCTTTTTCTCGGGCTG
GGGATGGTCTGGCGACGGAGCCGGAGGGAGATCGCGGGAGCCACTCGCAA
GGGGTGGGAAGGAGAAGGGACGGGGGGGGAGAACACGTCCCCGGTTGGTG
TTCGATCGTCAAGCTGCCCAGGTAAGGTGGGGGGCTACGAAGGAGAGGCA
AAATAAGGACTGAGGTTAGAGACGGAGAGTGAGGGAGCCAGAAGGGGGAA
CGGGCTAGGAGAGGGAGAGAGAGCGAGACAGAGAGAGAGGGAGAGGGAGA
ATGCGTGGCACGATACGTATCGTAGAAAACACACAAGGAGCAGATCAACC
AAGGCGTTGGACGCTGCGTGGTTGTGGGGCTTCTCGTTTGAGGCTTCTCG
TTTTTGTTCTTCCTTTTTCTTCTGCAGACCATCCTTGACTCCACGGCAGC
AGCTACCGCAGCAGCGGCGGTGGCGACGGTGGTGGCGAAGGCGCTGGGGT
CATGGGGGAAGCGGTACATCCGGACGTCCACACCACTGGACGGCATCGAT
TCTCGCCTTGGCCAGTGACTGACGACGTGGTCCAAGATCAACGCCGAACT
TCTGGGCGCAGATTAAGAAGCTCTTATTTCGGTGCGTCTTCCTACTTGCC
ATTTTGCACAAGAGCATACCCTTTTGCAAATCTCAACACCTTTGCACCAA
CGCTTGCCCCTGGCACCGTTCGCGTTTTGTTTTACCAGTCTTTTTTATTC
TACCTGTTTCGGTCCATTTCTCTCGTTTCCTTCACAGGACGAGGCATGGC
GCATGCGTCGGCACAGTGGACGCAATCGGGAATGTGCGGAAGCGCGCACG
GAAGGTGTGCTTGTTCTCCGGCCGACCATCCGGGAAAGAACGAGAGTCTA
CACAGGTATGTGTGTCTGAATATATTTACATATGGGTCGAACAAAGAGTA
AAGAATGGTGCGGCACGTCGCGGAAGGATGGAGAACATATCGGACAGCGC
CCACGGTTTAGACGTTGCTTCACGGAAAGCCGCATGTTCTTTATTCGCTC
TTTCCTGGTTGTTCGTCGTGCATTTTCTGCACAGCAGCCTGAACACGCTC
CCGGTATCGCAGTCAGCTAGGGTAGGGCCGGCGATGCACCAGGAACGGCC
AGTGGGGACGGGGCGAGGAGCGGAGGAGGGGGGAGGGAAGCGGGGTAGAT
CGTCAAGGACGTGGTGCACCGGGAACGGCCAGCGGGGGCGGGCGGGGCGA
GGAGCGGGAGCAAGGCGAGGAGCAGGGGCGGGACAAGCAGCGGGGCGGGG
GGAGGGAAGCGGGGTATGCCGTTGTCTGTTGTTCGTATCGCACCTCGTGG
AACCAGGCCAGCGGGCAGCGATGGCCCAGGAGCGACTTTGCTCATGACCG
ATGCAGAAATTTAAGTCCTCGGGCATAACGTGCTGAGGGTGACGCTGCGT
AGTTTAGAGGGTGTGGGCGTGGGCGTTGGCAGAGCTTGTACGCAAACTCA
AAGGTGCCGTTAGGGTGGGCAAGCGGAGGAAGCTGAACCCCCCAACGAGA
AATGGACTAGCGGTGCAGAGGTGTTGATTTTTTTCTTTTTGCGCGTGATT
CGTGTGATTATTGGTCTCATTACTTCTCCCGGTCTAGGGGCGTCTTCCGG
CCGAGAGTATTGCCGAAAGTGTGATATATGAACAGCAGTGGAGTGTAAAT
GGAAACAAGGTGGTTCTTTTTTTATTACATTTTTCACAGCAGTTTGAAAA
ACGTTTCGAAGTACCAGACGTGCACTTCTTTTTAAATTCTCTTTAAGTCT
TACGAAACGCATGAGGGTCTTGCGCATGTAGCCACAAAAACATCGCTCCG
GCCTCGACCGTGGCCAAAAAAAAAACGACGGCAAAAAAGAAGGAGGAAGG
AAAAAAGTAAAAAAAATGACATGGACTAGAAACAGAGGACAAAATAATTG
GACTACACACACGTACCGCCTTATTGCCATGCTCGGGCATCGATCGTGGT
ACAAACAACCGGATATACGAGGGGGGGGAAAGAGAAGGAAAAATGCAAAA
GACGTAAAAAAAAAAAGATAAAAAAAAGGGGAGGTAGAACAAAAAGGAAA
CGCAGGTGAGAGTCCAACCCTCAACTTTGTGCCTTGATCGTCTAGACAGG
TGTATTATATACGCTAGAAAGACAGTTTCCGGGTGGTCTATCAGCACACT
ATAAGTAAGACGTTTTTTTCCCAACAACCCGTCCACCCGTCTCTGACTCT
GACTTATGGTCCACAACATCGAACCACTTTTTGCCCCAAAAACTATACTC
CTCCCCTGACTTCAGCTCTAAAATCGCCCCAAAAACTAGACTGCTCCCTT
GACTTGTACCCAAAACAAACAAACTTGCTCCCTAGACTCCAGCTCCTGTG
CTCCCCACAATTAAGTTTCGTACATGAGAGCGTCATCTTGGCCTTCCCCG
TGCCCTTTGTTTATCTCCAGCCCCCTCGTACCAACGCGCCCCTTTACGTT
CGTACCAGACCTCGACTGGGCGCGCCTCCAGCCGCCGACCTCATCGACCC
CATGAGAGAGGATTTTGGAAGGAGGAAGTGCGGCGCGGGTCGAAGGGAAC
GGGGGTTTGCCAACGGCGCGGGGCGAGGGGGGTGGTACTGACCTGGGTTG
GACTTTGTGGACGGTGAGTTTTTGCGTCGGTGCTGTGCATCAAACGCAAC
CTTAAGGCTTGTACTCAAATTCGGCGAATAAATCGTCGGGTACGCAGTTT
AAATCTTCGACAACTTTCGGCTTGCACGCCCTCATGTCTCCTGACACAGA
TCGCGTTTCAGGTTCAACGTCTACTCCTTTCTGTCCTTTACTACCCAGAA
CTTCTTTCATGCTCTTGTACAACTTGCTCAGCTCGAGTTCTATGGTTTTG
AGCGCTGGAACATCTTCCACGTCCAGCATAATTTGCTTTAACTCTCCAAG
TTTCGAGCTAATGCTCTCCGGTATGATGAGACTCTCACTTCGTCCTTGCT
CATTGCGGTGTCGTTTTTAAAGGCCATGGTGTCAGCTTGTGTCAGTAGCC
GGCGAAGAGTGCGCGCCATGTGCGCCCGCTGATGTCCGAAAATAATCGAA
AAAACTTTTCATCTGACGTGTCTGCTCTCCACCCTATCCACTCCTGTTGT
TGCTCAGGAGGCGCCCCCCTCCGGCCAGCGACAAGCGATTTCATTGAACG
CAAGAGCCCGACGACCCCACCTTCAATGAGAAGTCTGTGAACACGACGAG
ACGAATAGTTCTATGAGTTTTGAAATTCCAGTAGTCGGACCGGATTATCA
TTTGGAATGCTTGTGCGCGATGGTTGAGGTTATCGATGATGAACGAATGT
GTTGTACAAGAAAGACCTGTCAAGAAGCGGGGAGGGGGCTCCCCCCAAAA
ACCGATGTTTTGTAAAGAGGCCGGCAACACGACTCCAGGGATGGGTTTGT
TGAAATCTTCCTCCCACCTTAGCTGCCGCGTCATGTGTCAAGAGTGGTTT
GGGCGCGAGACCCCCCCTCAAGTGGTTTTGAAAACACGGTTCCAGGGCCG
ATGCGTCTACAGTCACGGGCAGGGTTGGGATATCCCGGAACATCTCACCA
AAAGCCGCTGGTATCTGTGTGAGGGGGGATGGTAGACACCGGAATATTGA
TTTGTGGCGATGGAGAATGCACTGAAACACAGCGGTGAGCCGGCGACGGT
TCCGCGTCCTCTTTTCATGTGCTTCGACATCTCTTTCGACGTTAGGTGGT
GTGTGTCTTGTGGATGTAAAGCCGTTGTGTGAAAAATGTGAAGAATATGT
ACAAGTAAACCCGGCCGCGCGCGGAATCTCCGGACCGAAACCTTTGCGGC
GAGTGTTCGTTTCGTTTATCGGTTAAGGGTACGAGGGTGTGATGGGGTGC
TACCGGCCGAATGCGGGCGGGGTATTCTGTCTATCCTGGGACGGCGGGGC
ATGAATTTGTGGGCCCGAAAGGCATTGCAAGCCATCCGGGCGGCAAACCG
TCCCATTGCTCCACTTAAACGGGGTGCCGAGCTTCCTTTTTGTGCCCCTG
GCGGGATGGATACTGGGGTTGGGCAATGGGTGTTGCCACCGCAACCTGGA
CACACTTCGTCGCTAAAAAAGTCAGTGTTGCGTCGAGAAGTCATGCATGT
GCCTCTGCGTACGCTGCCTACACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1148:1139..8063+

>mRNA_Ecto-sp13_S_contig1148.1296.1 ID=mRNA_Ecto-sp13_S_contig1148.1296.1|Name=mRNA_Ecto-sp13_S_contig1148.1296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1148:1139..8063+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCCACAGGAGCTGCACGCGAAAGACATGGAGCGGATGGGGTTCGA
GTGTCTCGCTTTGGACCAAGACGAGGTTGCCCTTTCGATCGCCCAAAGTC
TCAAGGTGGACTGGAGAGCGCTAGCTGCCCCACTACCGATTGTCCCTGGG
GAGGTCTCTGGGCCAGTTGTGGAGCAAACCGAGTGCGGGGCTCACCCGCA
GGGCACGTCCGCCCCAGCCGTATCTTCCGGCAGGCACGGCGGAGGAGGCA
GGGAACGTGTCGCCATGGGAGGCGGGTTGGCGGGATCGTCGACGCCTGCT
GCTGTGCCCGAGACCCTGGCGGCTGGAAGCGGCGGTGTTTCTGGCGTGGC
ACCCTGGAAGCATACATCCTCCGAGTTTGAGCAGGGGATTGTTTTTTTTA
ACCCCCCGGTGGGACGTATCTTCCGTGTGTAA
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