mRNA_Ecto-sp13_S_contig11474.1293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11474.1293.1
Unique NamemRNA_Ecto-sp13_S_contig11474.1293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: D8LTN8_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.320e-37
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2
Query:    2 QYSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
            QYSFEPDNQVSMVKQ+LQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS
Sbjct:   14 QYSFEPDNQVSMVKQSLQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 77          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: M4BXH5_HYAAE (Ubiquitin-like domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=M4BXH5_HYAAE)

HSP 1 Score: 104 bits (259), Expect = 5.200e-28
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
            ++FEPDN +  VKQALQEKEGIQVDQIRLIYSGKQLADD TL  YNV PGGTIHMVLQLRGG
Sbjct:   15 FNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVEPGGTIHMVLQLRGG 76          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A836CG90_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG90_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.390e-28
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 2
Query:    2 QYSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
            Q++FEP +QV +VKQALQEKEGIQVDQIRLIYSGKQL+D+ TLS YNVA GGTIHMVLQLRGG
Sbjct:   14 QFNFEPSDQVLLVKQALQEKEGIQVDQIRLIYSGKQLSDNQTLSQYNVAAGGTIHMVLQLRGG 76          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: K3WSN3_GLOUD (Ubiquitin-like domain-containing protein n=8 Tax=Oomycota TaxID=4762 RepID=K3WSN3_GLOUD)

HSP 1 Score: 103 bits (256), Expect = 1.270e-27
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
            ++FEPDN +  VKQALQEKEGIQVDQIRLIYSGKQLADD TL  YNVA GGTIHMVLQLRGG
Sbjct:    9 FNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVAAGGTIHMVLQLRGG 70          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S1V0J3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0J3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.670e-27
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 2
Query:    5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
            ++FEP+NQV  VKQALQEKEGIQVDQIRLI+SGKQL+DD +L HYN+A G TIHMVLQLRGGS
Sbjct:   47 FNFEPENQVLAVKQALQEKEGIQVDQIRLIHSGKQLSDDKSLEHYNIAAGATIHMVLQLRGGS 109          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A1E7FL88_9STRA (Putative ubiquitin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL88_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.750e-26
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    8 SFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
            +FEP+NQV  VKQ+LQEKEGIQVDQIRLI+SGKQLADD TL  YN+A G TIHMVLQLRGGS
Sbjct:   16 NFEPENQVLAVKQSLQEKEGIQVDQIRLIHSGKQLADDKTLESYNIAAGATIHMVLQLRGGS 77          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S3L110_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L110_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.190e-25
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 2
Query:    5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
            ++FEP+NQV  +KQALQEKEGIQVDQI+LI+SGKQLAD++TL  YN+A G TIHMVLQLRGG
Sbjct:   60 FNFEPENQVLAIKQALQEKEGIQVDQIKLIFSGKQLADNNTLESYNIAAGATIHMVLQLRGG 121          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: B8BQ41_THAPS (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ41_THAPS)

HSP 1 Score: 94.7 bits (234), Expect = 3.670e-24
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 2
Query:    5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
            ++FEP+NQV  VKQALQEKEGIQVDQIRLI+SGKQL+DD TL  Y +  G TIHMVLQLRGG+
Sbjct:   14 FNFEPENQVLAVKQALQEKEGIQVDQIRLIFSGKQLSDDRTLESYAINAGATIHMVLQLRGGA 76          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S2EB16_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB16_TRICV)

HSP 1 Score: 95.5 bits (236), Expect = 5.250e-24
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 2
Query:    8 SFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
            +FEP+NQV  VKQALQEKEGIQVDQIRLI++GKQLADD TL   N+  G TIHMVLQLRGGS
Sbjct:   55 NFEPENQVLAVKQALQEKEGIQVDQIRLIFAGKQLADDRTLESLNITAGATIHMVLQLRGGS 116          
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S2K0B5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0B5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.490e-24
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
            ++FEP+NQV  +KQA+QEKEGIQVDQI+LI+SGKQLADD ++S YN+  G TIHMVLQLRGG
Sbjct:   45 FNFEPENQVLQLKQAVQEKEGIQVDQIKLIFSGKQLADDKSISSYNITAGSTIHMVLQLRGG 106          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN8_ECTSI5.320e-3798.44Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
M4BXH5_HYAAE5.200e-2883.87Ubiquitin-like domain-containing protein n=25 Tax=... [more]
A0A836CG90_9STRA7.390e-2882.54Ubiquitin-related domain-containing protein n=1 Ta... [more]
K3WSN3_GLOUD1.270e-2783.87Ubiquitin-like domain-containing protein n=8 Tax=O... [more]
A0A7S1V0J3_9STRA7.670e-2779.37Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FL88_9STRA5.750e-2680.65Putative ubiquitin-like protein n=1 Tax=Fragilario... [more]
A0A7S3L110_9STRA7.190e-2575.81Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8BQ41_THAPS3.670e-2474.60Ubiquitin-like domain-containing protein (Fragment... [more]
A0A7S2EB16_TRICV5.250e-2477.42Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2K0B5_9STRA5.490e-2472.58Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11474contigEcto-sp13_S_contig11474:39..921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462601.6053011-CDS-Ecto-sp13_S_contig11474:38..1111681462601.6053011-CDS-Ecto-sp13_S_contig11474:38..111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11474 39..111 +
1681462601.6195774-CDS-Ecto-sp13_S_contig11474:798..9201681462601.6195774-CDS-Ecto-sp13_S_contig11474:798..920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11474 799..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11474.1293.1prot_Ecto-sp13_S_contig11474.1293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11474 39..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11474.1293.1

>prot_Ecto-sp13_S_contig11474.1293.1 ID=prot_Ecto-sp13_S_contig11474.1293.1|Name=mRNA_Ecto-sp13_S_contig11474.1293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
TIQLRAGQPSEHGQAGLAREGRDPGGPNPIDLQREATGRRPHIVPLQRRP
GRNHSHGVAVARRLA
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mRNA from alignment at Ecto-sp13_S_contig11474:39..921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11474.1293.1 ID=mRNA_Ecto-sp13_S_contig11474.1293.1|Name=mRNA_Ecto-sp13_S_contig11474.1293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11474:39..921+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATACAGCTTCGAGCCGGACAACCAAGTGAGCATGGTCAAGCAGGCCT TGCAAGAGAAGGAAGGGATCCAGGTGGGTAGACGAACGAGGGGGAGGAAG AGCGTGTGGTATCGCCATAGCCATTGGCGTTGCCGTTCTTACTTGGCGCC ATTGGAGACACACCGCCATGGTCAGAAATATGGGATTCCGGGTTTACACT TGTTTTGACGCGCAGGCCCGTGTTGTGGATCATCCCGTCTGTGGTCCTAG AGTACCTTTCGCATGCCATGGCCTCGGAGTTCCTAACCACCAAACGGGAA ATGGTTCCAGTCCGGGTGATTTGATAATGGTTTCAACCCTTACAGCTCGC GCAAGGGAGTATCGCACCCTCTGACGCAAAGGTTCGGTTGGTGGAAGATT GGTCGGCCCGGATCACATCCTCAGGTGTGACGTGTTCGGATCTCAGCCAG CACGTATCATGTCACGATTTCCGCCATCAAAACCAACTCCATCACTCCAC GGCTGACAACCATGGGTATTGCGGTGATTGTTCAGTGTCGAAAAGGTACG AAGGGAATCCTTTGCACAAGTGAAAATACATCTCATAATTCGTGTGTGCG GTGATGCGATGTACCTCGTTGTCCGAGTCGCGGACGCGAAACGGTTGATG TTGTGGCGGCAAATGATGTATATAAGATTTCTCGCTGTCGAACCAAGCCA TGGTAGTGCGTCATGCCATGCCCGAACCCCTTCCTCTTGTCATGGCTCTT TCGCACGCAGGTGGACCAAATCCGATTGATCTACAGCGGGAAGCAACTGG CAGACGACCACACATTGTCCCACTACAACGTCGCCCCGGGAGGAACCATT CACATGGTGTTGCAGTTGCGCGGAGGCTCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11474:39..921+

>mRNA_Ecto-sp13_S_contig11474.1293.1 ID=mRNA_Ecto-sp13_S_contig11474.1293.1|Name=mRNA_Ecto-sp13_S_contig11474.1293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11474:39..921+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATACAGCTTCGAGCCGGACAACCAAGTGAGCATGGTCAAGCAGGCCT
TGCAAGAGAAGGAAGGGATCCAGGTGGACCAAATCCGATTGATCTACAGC
GGGAAGCAACTGGCAGACGACCACACATTGTCCCACTACAACGTCGCCCC
GGGAGGAACCATTCACATGGTGTTGCAGTTGCGCGGAGGCTCGCG
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