mRNA_Ecto-sp13_S_contig11474.1293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: D8LTN8_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN8_ECTSI) HSP 1 Score: 127 bits (318), Expect = 5.320e-37 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2
Query: 2 QYSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
QYSFEPDNQVSMVKQ+LQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS
Sbjct: 14 QYSFEPDNQVSMVKQSLQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 77
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: M4BXH5_HYAAE (Ubiquitin-like domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=M4BXH5_HYAAE) HSP 1 Score: 104 bits (259), Expect = 5.200e-28 Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query: 5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
++FEPDN + VKQALQEKEGIQVDQIRLIYSGKQLADD TL YNV PGGTIHMVLQLRGG
Sbjct: 15 FNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVEPGGTIHMVLQLRGG 76
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A836CG90_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG90_9STRA) HSP 1 Score: 103 bits (258), Expect = 7.390e-28 Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 2
Query: 2 QYSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
Q++FEP +QV +VKQALQEKEGIQVDQIRLIYSGKQL+D+ TLS YNVA GGTIHMVLQLRGG
Sbjct: 14 QFNFEPSDQVLLVKQALQEKEGIQVDQIRLIYSGKQLSDNQTLSQYNVAAGGTIHMVLQLRGG 76
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: K3WSN3_GLOUD (Ubiquitin-like domain-containing protein n=8 Tax=Oomycota TaxID=4762 RepID=K3WSN3_GLOUD) HSP 1 Score: 103 bits (256), Expect = 1.270e-27 Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query: 5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
++FEPDN + VKQALQEKEGIQVDQIRLIYSGKQLADD TL YNVA GGTIHMVLQLRGG
Sbjct: 9 FNFEPDNTILHVKQALQEKEGIQVDQIRLIYSGKQLADDKTLQDYNVAAGGTIHMVLQLRGG 70
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S1V0J3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0J3_9STRA) HSP 1 Score: 102 bits (254), Expect = 7.670e-27 Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 2
Query: 5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
++FEP+NQV VKQALQEKEGIQVDQIRLI+SGKQL+DD +L HYN+A G TIHMVLQLRGGS
Sbjct: 47 FNFEPENQVLAVKQALQEKEGIQVDQIRLIHSGKQLSDDKSLEHYNIAAGATIHMVLQLRGGS 109
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A1E7FL88_9STRA (Putative ubiquitin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL88_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 5.750e-26 Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 2
Query: 8 SFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
+FEP+NQV VKQ+LQEKEGIQVDQIRLI+SGKQLADD TL YN+A G TIHMVLQLRGGS
Sbjct: 16 NFEPENQVLAVKQSLQEKEGIQVDQIRLIHSGKQLADDKTLESYNIAAGATIHMVLQLRGGS 77
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S3L110_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L110_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.190e-25 Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 2
Query: 5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
++FEP+NQV +KQALQEKEGIQVDQI+LI+SGKQLAD++TL YN+A G TIHMVLQLRGG
Sbjct: 60 FNFEPENQVLAIKQALQEKEGIQVDQIKLIFSGKQLADNNTLESYNIAAGATIHMVLQLRGG 121
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: B8BQ41_THAPS (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ41_THAPS) HSP 1 Score: 94.7 bits (234), Expect = 3.670e-24 Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 2
Query: 5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
++FEP+NQV VKQALQEKEGIQVDQIRLI+SGKQL+DD TL Y + G TIHMVLQLRGG+
Sbjct: 14 FNFEPENQVLAVKQALQEKEGIQVDQIRLIFSGKQLSDDRTLESYAINAGATIHMVLQLRGGA 76
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S2EB16_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB16_TRICV) HSP 1 Score: 95.5 bits (236), Expect = 5.250e-24 Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 2
Query: 8 SFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGGS 193
+FEP+NQV VKQALQEKEGIQVDQIRLI++GKQLADD TL N+ G TIHMVLQLRGGS
Sbjct: 55 NFEPENQVLAVKQALQEKEGIQVDQIRLIFAGKQLADDRTLESLNITAGATIHMVLQLRGGS 116
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Match: A0A7S2K0B5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0B5_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.490e-24 Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 2
Query: 5 YSFEPDNQVSMVKQALQEKEGIQVDQIRLIYSGKQLADDHTLSHYNVAPGGTIHMVLQLRGG 190
++FEP+NQV +KQA+QEKEGIQVDQI+LI+SGKQLADD ++S YN+ G TIHMVLQLRGG
Sbjct: 45 FNFEPENQVLQLKQAVQEKEGIQVDQIKLIFSGKQLADDKSISSYNITAGSTIHMVLQLRGG 106 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11474.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11474.1293.1 >prot_Ecto-sp13_S_contig11474.1293.1 ID=prot_Ecto-sp13_S_contig11474.1293.1|Name=mRNA_Ecto-sp13_S_contig11474.1293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp TIQLRAGQPSEHGQAGLAREGRDPGGPNPIDLQREATGRRPHIVPLQRRPback to top mRNA from alignment at Ecto-sp13_S_contig11474:39..921+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11474.1293.1 ID=mRNA_Ecto-sp13_S_contig11474.1293.1|Name=mRNA_Ecto-sp13_S_contig11474.1293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11474:39..921+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11474:39..921+ >mRNA_Ecto-sp13_S_contig11474.1293.1 ID=mRNA_Ecto-sp13_S_contig11474.1293.1|Name=mRNA_Ecto-sp13_S_contig11474.1293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11474:39..921+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |