mRNA_Ecto-sp13_S_contig11467.1285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11467.1285.1
Unique NamemRNA_Ecto-sp13_S_contig11467.1285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11467.1285.1 vs. uniprot
Match: D7FSZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ2_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 8.180e-66
Identity = 123/161 (76.40%), Postives = 133/161 (82.61%), Query Frame = 1 
Query:    1 MRMSSRSSLLTMPSPARATAARTRNRARFSQQGRVARKALRREDVMSRGTSLLWRGGGSNXXXTTTVGMEVEEARENSDDGKVTNAPNGAVEAAQTQSWSSSAGIVRRLQQQKQK*Q-ERLSTLIGMHRIVSDIRTVRRAYKTDAFRLRVWRTSASRQGEV 480
            M+MSSRSSLLT+ SPARA AARTR RARFS+Q R ARKALRREDVMSRGTS+LWRG GSN   TTT G E EEAR+N DD KV N PNG+VEA+Q+QSWS SA IV+R QQ       ER STLIGM+RIVSDIRTVRRAYKTDAFRLRVWRTSA RQGEV
Sbjct:    1 MKMSSRSSLLTITSPARAAAARTRTRARFSRQARAARKALRREDVMSRGTSVLWRGDGSNNGGTTTEGKEGEEARDNRDDFKVANTPNGSVEASQSQSWSLSAEIVQRPQQXXXXXXXERFSTLIGMNRIVSDIRTVRRAYKTDAFRLRVWRTSAWRQGEV 161
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BLAST of mRNA_Ecto-sp13_S_contig11467.1285.1 vs. uniprot
Match: A0A6H5L667_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L667_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.830e-38
Identity = 100/161 (62.11%), Postives = 109/161 (67.70%), Query Frame = 1 
Query:    1 MRMSSRSSLLTMPSPARATAARTRNRARFSQQGRVARKALRREDVMSRGTSLLWRGGGSNXXXTTTVGMEVEEARENSDDGKVTNAPNGAVEAAQTQSWSSSAGIVRRLQQ-QKQK*QERLSTLIGMHRIVSDIRTVRRAYKTDAFRLRVWRTSASRQGEV 480
            M++SSRS+LLT               ARFS+Q R ARKALR                  N   TTTVG E EEARE SDDGKVTN  NGAVE +QTQSWS SA IV+R QQ Q+QK +ERLSTLIGMHRIVSDIRTVRRA KT AFRLRVWRT+A RQGEV
Sbjct:  895 MKVSSRSALLTXXXXXXXXXXXXXXXARFSRQARAARKALR------------------NNGGTTTVGKEGEEAREKSDDGKVTNTRNGAVEGSQTQSWSLSAEIVQRPQQRQQQKQRERLSTLIGMHRIVSDIRTVRRACKTYAFRLRVWRTAAWRQGEV 1037
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BLAST of mRNA_Ecto-sp13_S_contig11467.1285.1 vs. uniprot
Match: D7FSZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.500e-18
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 2 
Query:  215 RRQGRTATTERSPTPLTGRSRPLRPSPGRRPRGSFDDCSS-RSRSNRSDCRPLSECTASCPISGR 406
            RRQG T TT RSPTPLT RSRPLR SPGR PR SF+D SS  SRSNRSD RPLSECTASCPISGR
Sbjct: 1174 RRQGTTVTTVRSPTPLTARSRPLRASPGRCPRRSFNDRSSGSSRSNRSDFRPLSECTASCPISGR 1238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11467.1285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSZ2_ECTSI8.180e-6676.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L667_9PHAE3.830e-3862.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSZ5_ECTSI5.500e-1881.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11467contigEcto-sp13_S_contig11467:1413..1892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size480
Hectar predicted targeting categorymitochondrion
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462601.1349287-UTR-Ecto-sp13_S_contig11467:1412..15441681462601.1349287-UTR-Ecto-sp13_S_contig11467:1412..1544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11467 1413..1544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462601.1459026-CDS-Ecto-sp13_S_contig11467:1544..18921681462601.1459026-CDS-Ecto-sp13_S_contig11467:1544..1892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11467 1545..1892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11467.1285.1prot_Ecto-sp13_S_contig11467.1285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11467 1545..1892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11467.1285.1

>prot_Ecto-sp13_S_contig11467.1285.1 ID=prot_Ecto-sp13_S_contig11467.1285.1|Name=mRNA_Ecto-sp13_S_contig11467.1285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MRMSSRSSLLTMPSPARATAARTRNRARFSQQGRVARKALRREDVMSRGT
SLLWRGGGSNNGGTTTVGMEVEEARENSDDGKVTNAPNGAVEAAQTQSWS
SSAGIVRRLQQQKQK*
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mRNA from alignment at Ecto-sp13_S_contig11467:1413..1892-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11467.1285.1 ID=mRNA_Ecto-sp13_S_contig11467.1285.1|Name=mRNA_Ecto-sp13_S_contig11467.1285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11467:1413..1892- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGATGTCGTCGAGATCGTCTTTGCTGACCATGCCTTCCCCAGCCAG
AGCAACAGCGGCGAGGACGAGGAACCGCGCTCGTTTCTCCCAGCAAGGCA
GGGTCGCCCGCAAGGCACTTCGGCGAGAGGACGTGATGTCTCGCGGGACA
TCATTGTTGTGGCGTGGCGGCGGCAGCAACAACGGTGGAACGACTACGGT
GGGCATGGAGGTGGAGGAGGCAAGGGAGAACAGCGACGACGGAAAGGTCA
CCAACGCCCCTAACGGGGCGGTCGAGGCCGCTCAGACCCAGTCCTGGTCG
TCGTCCGCGGGGATCGTTCGACGACTGCAGCAGCAGAAGCAGAAGTAACA
GGAGCGATTGTCGACCCTTATCGGAATGCACCGCATCGTGTCCGATATCC
GGACGGTGAGAAGGGCCTACAAGACCGACGCGTTCCGCTTGAGGGTGTGG
CGAACGTCGGCTTCGCGGCAAGGCGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11467:1413..1892-

>mRNA_Ecto-sp13_S_contig11467.1285.1 ID=mRNA_Ecto-sp13_S_contig11467.1285.1|Name=mRNA_Ecto-sp13_S_contig11467.1285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11467:1413..1892- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGATGTCGTCGAGATCGTCTTTGCTGACCATGCCTTCCCCAGCCAG
AGCAACAGCGGCGAGGACGAGGAACCGCGCTCGTTTCTCCCAGCAAGGCA
GGGTCGCCCGCAAGGCACTTCGGCGAGAGGACGTGATGTCTCGCGGGACA
TCATTGTTGTGGCGTGGCGGCGGCAGCAACAACGGTGGAACGACTACGGT
GGGCATGGAGGTGGAGGAGGCAAGGGAGAACAGCGACGACGGAAAGGTCA
CCAACGCCCCTAACGGGGCGGTCGAGGCCGCTCAGACCCAGTCCTGGTCG
TCGTCCGCGGGGATCGTTCGACGACTGCAGCAGCAGAAGCAGAAGTAA
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