mRNA_Ecto-sp13_S_contig11466.1283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI) HSP 1 Score: 365 bits (937), Expect = 2.490e-119 Identity = 185/191 (96.86%), Postives = 188/191 (98.43%), Query Frame = 1
Query: 1 DAMDGRALEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
DAMDG ALEHLVGFL+ERRGQSGIVYCHKRDTAEELAKALNRALREESLLDG KAFLAMPYHGKMSDHDRTEAQA+FMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKR+RRASLKAVKAVDSVVAYCE QGCR
Sbjct: 267 DAMDGGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGGKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRRRRASLKAVKAVDSVVAYCEKQGCR 457
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A6H5KCP0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE) HSP 1 Score: 351 bits (901), Expect = 3.430e-113 Identity = 181/193 (93.78%), Postives = 184/193 (95.34%), Query Frame = 1
Query: 1 DAMDGRALEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQAR--FMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
DAMDG ALEHLVGFL+ER GQSGIVYCHKRDTAEELAKALNRALR+ESLLDGRKAFLAMPYHGKMSDHDRTEAQAR FMSGEVDVI GSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETV LLAFLARKPRPLAG+EKGTE GRKRQRRASLKAVKAVDSVVAYCE GCR
Sbjct: 105 DAMDGGALEHLVGFLRERSGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQARAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVELLAFLARKPRPLAGEEKGTETGRKRQRRASLKAVKAVDSVVAYCEKLGCR 297
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A484F682_9EURY (DNA helicase n=1 Tax=Methanimicrococcus blatticola TaxID=91560 RepID=A0A484F682_9EURY) HSP 1 Score: 136 bits (343), Expect = 8.680e-34 Identity = 70/184 (38.04%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 22 LEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
+E L G++K+ R +SGI+YC RD+ E LA LN+ F A+PYH +SD R Q +F+ +VD+I +VAFGMG+DK DVRFV+H+DLPK++E YQE GR GRDG + +++ SR + FL K K ++ A + + +++YCE+ CR
Sbjct: 219 MEQLEGYIKKNRNKSGIIYCQSRDSVERLATRLNKL-----------GFSALPYHAGLSDDKRARHQDKFIRDDVDIIVATVAFGMGIDKPDVRFVIHYDLPKNLESYYQETGRGGRDGLECECILFFSRGDWHKIRFLIEK---------------KPSKKERDLAFQQLSQIISYCESTDCR 376
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: UPI001A979D67 (DNA helicase RecQ n=1 Tax=Pedobacter sp. SYSU D00535 TaxID=2810308 RepID=UPI001A979D67) HSP 1 Score: 135 bits (341), Expect = 1.400e-33 Identity = 78/184 (42.39%), Postives = 109/184 (59.24%), Query Frame = 1
Query: 22 LEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
L+ +V F+K +G+SGIVYC R EE+A+ALN L+G KA +PYH + R E Q +F+ EVDVI ++AFGMG+DK DVR+V+H D+PKSMEG YQE GRAGRDG + V V ++S + + LA K +P++ +E GT+ + V+ Y E+ CR
Sbjct: 222 LKEIVRFIKGYQGKSGIVYCLSRKKVEEVAEALN--------LNGIKA---LPYHAGLEAKVRAETQDKFLMEEVDVIVATIAFGMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGVCVAFYSEKDIEKLAKFM-KDKPVSEREIGTQ---------------ILKEVIDYVESSVCR 378
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A494VYP5_9SPHI (DNA helicase n=67 Tax=Bacteria TaxID=2 RepID=A0A494VYP5_9SPHI) HSP 1 Score: 135 bits (340), Expect = 1.920e-33 Identity = 74/184 (40.22%), Postives = 110/184 (59.78%), Query Frame = 1
Query: 22 LEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
++ +V F+++ +G+SGIVYC R EE+A+ALN L+G KA +PYH + R + Q +F+ +VDVI ++AFGMG+DK DVR+V+H D+PKSMEG YQE GRAGRDG + V V ++S + + L K +P++ +E GT+ + V+ YCE+ CR
Sbjct: 222 IKEIVKFVRQNQGKSGIVYCLSRKKVEEVAEALN--------LNGVKA---LPYHAGLDAKVRADTQDKFLMEDVDVIVATIAFGMGIDKPDVRYVIHHDVPKSMEGYYQETGRAGRDGGEGVCVAFYSEKDIDKLQKFM-KDKPVSEREIGTQ---------------ILKEVIDYCESSVCR 378
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A4Q3FBS8_9SPHI (ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3FBS8_9SPHI) HSP 1 Score: 130 bits (327), Expect = 4.210e-33 Identity = 70/184 (38.04%), Postives = 109/184 (59.24%), Query Frame = 1
Query: 22 LEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
++ ++ ++K+ G+SGI+YC R EE+A+ LN L+G KA +PYH + R + Q +F+ +V+VI ++AFGMG+DK DVRFV+H D+PKSMEG YQE GRAGRDG + V + +++++ V LA K +P++ +E GT+ + V+ Y E+ CR
Sbjct: 145 IKEIIRYIKQNTGKSGIIYCLSRKKVEEVAETLN--------LNGIKA---LPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGMGIDKPDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFM-KDKPVSEREIGTQ---------------ILKEVIDYAESAVCR 301
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A662RIW7_9EURY (DNA helicase n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A662RIW7_9EURY) HSP 1 Score: 134 bits (338), Expect = 4.310e-33 Identity = 71/185 (38.38%), Postives = 109/185 (58.92%), Query Frame = 1
Query: 19 ALEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
A + L+ +LK R+ SGI+YCH R +A++LA L + + + A+PYH + RTE Q +F+ +V++I +VAFGMG+DKS+VRFV+H+DLPK++E YQE GRAGRDG ++ +++ SR +G L++ + KE TE A K + +V +CE+ CR
Sbjct: 242 AYDQLLQYLKGRKNDSGIIYCHSRKSADDLANKLKK-----------EGYRALPYHAGLKADLRTETQDKFIKDDVEIIVATVAFGMGIDKSNVRFVIHYDLPKNLETYYQETGRAGRDGEESDCIIFFSRSDMGKLSYF------IDQKEDETE---------KQNAYKKLRCMVDFCESGTCR 400
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A519XAF0_9SPHI (ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519XAF0_9SPHI) HSP 1 Score: 130 bits (327), Expect = 4.960e-33 Identity = 66/154 (42.86%), Postives = 101/154 (65.58%), Query Frame = 1
Query: 22 LEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTE 483
++ ++ ++K+ G+SGI+YC R EE+A+ LN L+G KA +PYH + R + Q +F+ +V+VI ++AFGMG+DK DVRFV+H D+PKSMEG YQE GRAGRDG + V V +++++ V LA K +P++ +E GT+
Sbjct: 222 IKEIIRYIKQNTGKSGIIYCLSRKKVEEVAETLN--------LNGIKA---LPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGMGIDKPDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCVAFYAQKDVDKLAKFM-KDKPVSEREIGTQ 363
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A519ZGL4_9SPHI (DNA helicase (Fragment) n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519ZGL4_9SPHI) HSP 1 Score: 133 bits (334), Expect = 5.510e-33 Identity = 68/153 (44.44%), Postives = 101/153 (66.01%), Query Frame = 1
Query: 25 EHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTE 483
+ ++ F+K+ G+SGIVYC R EE+A++LN L+G KA +PYH + R + Q +F+ +VDVI ++AFGMG+DK DVRFV+H D+PKSMEG YQE GRAGRDG + + + +++++ V LA K +P+A +E GT+
Sbjct: 50 KEIIKFVKQHAGKSGIVYCLSRKKVEEVAESLN--------LNGIKA---LPYHAGLEPKVRADTQDKFLMEDVDVIVATIAFGMGIDKPDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGICIAFYAQKDVDKLAKFM-KDKPVAEREIGTQ 190
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Match: A0A3E2NYD8_9SPHI (DNA helicase n=5 Tax=Mucilaginibacter TaxID=423349 RepID=A0A3E2NYD8_9SPHI) HSP 1 Score: 134 bits (336), Expect = 6.700e-33 Identity = 74/185 (40.00%), Postives = 109/185 (58.92%), Query Frame = 1
Query: 19 ALEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGRKAFLAMPYHGKMSDHDRTEAQARFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAGKEKGTEAGRKRQRRASLKAVKAVDSVVAYCETQGCR 573
A++ +V F+K+ +G+SGI+YC R EE+A+ALN L+G A+PYH + R + Q +F+ +V+VI ++AFGMG+DK DVR+VVH D+PKSMEG YQE GRAGRDG + V V ++S + + L K +P+A +E GT+ + V+ Y E+ CR
Sbjct: 221 AIKEIVKFVKQNQGKSGIIYCLSRKKVEEVAEALN--------LNG---VRALPYHAGLDPKVRADTQDKFLMEDVEVIVATIAFGMGIDKPDVRYVVHHDMPKSMEGYYQETGRAGRDGGEGVCVAFYSAKDIDKLQKFM-KDKPVAEREIGTQ---------------ILKEVIDYAESSVCR 378 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11466.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11466.1283.1 >prot_Ecto-sp13_S_contig11466.1283.1 ID=prot_Ecto-sp13_S_contig11466.1283.1|Name=mRNA_Ecto-sp13_S_contig11466.1283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp MDGRALEHLVGFLKERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGback to top mRNA from alignment at Ecto-sp13_S_contig11466:1..3929- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11466.1283.1 ID=mRNA_Ecto-sp13_S_contig11466.1283.1|Name=mRNA_Ecto-sp13_S_contig11466.1283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11466:1..3929- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11466:1..3929- >mRNA_Ecto-sp13_S_contig11466.1283.1 ID=mRNA_Ecto-sp13_S_contig11466.1283.1|Name=mRNA_Ecto-sp13_S_contig11466.1283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11466:1..3929- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |