mRNA_Ecto-sp13_S_contig1146.1278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1146.1278.1
Unique NamemRNA_Ecto-sp13_S_contig1146.1278.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: D7FUN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN6_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.180e-61
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQEFDL---LESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLALEV 333
            GELANGMEYYVRANRHPRERAELRIVIKVGSV+ETEQERGVAHLIEHLAFRASRTCPQEFDL   LESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLALEV
Sbjct:   60 GELANGMEYYVRANRHPRERAELRIVIKVGSVMETEQERGVAHLIEHLAFRASRTCPQEFDLVKELESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLALEV 173          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A6H5K2T2_9PHAE (Peptidase_M16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.530e-34
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQEFDLLESHGIKFGAHQ 222
            GELANGMEYYVRANRHPRERAELRIVIKVGSV+ETEQERGVAHLIEHLAFRASRTCPQEFDL++   I    HQ
Sbjct:   60 GELANGMEYYVRANRHPRERAELRIVIKVGSVMETEQERGVAHLIEHLAFRASRTCPQEFDLVKE-AIGVARHQ 132          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A3D4TEG6_9BACT (Peptidase_M16 domain-containing protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A3D4TEG6_9BACT)

HSP 1 Score: 122 bits (306), Expect = 4.770e-33
Identity = 56/113 (49.56%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQE--FDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLALEV 333
            G+LANG+ YY+R N+ PR RAELR+V+K GSVLE++Q++G+AH +EH+AF  ++   ++   + LE  G+ FGA  NAYTSF+ETVYEL +P D P + ++  ++L+  A EV
Sbjct:   36 GKLANGLTYYIRQNKEPRNRAELRLVVKAGSVLESDQQQGLAHFVEHMAFNGTKNFKKQELINFLEKSGVNFGADLNAYTSFDETVYELQLPTDSPAVFKKGFQILKDWAHEV 148          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A7S0MFY0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFY0_9CRYP)

HSP 1 Score: 119 bits (297), Expect = 3.760e-31
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCP--QEFDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLALEV 333
            G L NG+ YYV+ N+ P  R ELR+V+KVGSV ETE+E G+AH++EHLAFR +      +    LE+ G +FGA QNAYTSF+ETVY LHVP D   LLE++L VLR+ A  V
Sbjct:   17 GTLKNGLTYYVQNNKKPNARCELRLVVKVGSVFETEEECGIAHMVEHLAFRGTAMYDTFEVVRFLETIGARFGACQNAYTSFDETVYYLHVPIDTDGLLEKALTVLREWAFAV 129          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A2V8LLW8_9BACT (Peptidase_M16 domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8LLW8_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.030e-30
Identity = 56/110 (50.91%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQE--FDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLA 324
            G+ ANGM YY+R N+ P +RAELR+V+K GS+LE + ++G+AHL+EH+AF  ++  P+      +ES G++FGA  NAYTSF+ETVY L VP D+P +++R+L VL   A
Sbjct:   52 GKFANGMRYYIRRNKKPEKRAELRLVVKAGSILEDDDQQGLAHLVEHMAFNGTKHFPKNEIISFMESLGMRFGADINAYTSFDETVYMLTVPTDKPEMMDRALLVLEDWA 161          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A2V8Q3U4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8Q3U4_9BACT)

HSP 1 Score: 120 bits (302), Expect = 1.020e-29
Identity = 57/110 (51.82%), Postives = 83/110 (75.45%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQE--FDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLA 324
            G+ ANGM YYVRAN+ P +RAELR+V+K GS+LE + ++G+AHL+EH+AF  ++  P+      +ES G++FGA  NA+TSF+ETVYEL VP D+P +L+++L +L   A
Sbjct:   47 GKFANGMSYYVRANKKPEKRAELRLVVKAGSILEDDDQQGLAHLVEHMAFNGTKHFPKNEIISFMESIGMRFGADVNAFTSFDETVYELTVPTDKPEVLDKALLILEDWA 156          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A7C6ADJ7_9BACT (Insulinase family protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C6ADJ7_9BACT)

HSP 1 Score: 121 bits (303), Expect = 1.190e-29
Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQE--FDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLA 324
            G L NG++YY+R NR P +RAELR+V+K GSVLE + ++G+AH +EH+AF  +++ P+    D LE  G+KFG   NAYTSF+ETVY L VP D P ++E++L +L + A
Sbjct:   42 GTLENGLKYYIRENRKPEKRAELRLVVKAGSVLEDDDQQGIAHFVEHMAFNGTKSYPKHALIDFLEKAGVKFGPDLNAYTSFDETVYMLQVPTDTPEVIEKALHILEEWA 151          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A7Y4UD36_9BACT (Insulinase family protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4UD36_9BACT)

HSP 1 Score: 118 bits (295), Expect = 2.420e-29
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQE--FDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLA 324
            G  ANGM YY+RAN+ P + AELR+ IK GS+LE + ++G+AH +EH+AF  ++  P++     +ES G++FGA  NAYTSF+ETVY+L VP D+P  LER+ +VL   A
Sbjct:   51 GTFANGMRYYIRANKKPEKHAELRLAIKAGSILEDDDQQGMAHFVEHMAFNGTKNFPKQDIVTFIESLGMRFGADLNAYTSFDETVYQLQVPTDKPGALERAFQVLEDWA 160          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A143PHD1_LUTPR (Protease 3 n=4 Tax=Luteitalea TaxID=2004797 RepID=A0A143PHD1_LUTPR)

HSP 1 Score: 119 bits (298), Expect = 5.650e-29
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQE--FDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLA 324
            G L+NGM YY+RAN+ P+ RAE+R+V+  GSVLE + +RG+AH +EH+AF  +R  P+      L+S G++FGAH NA TSF++TV+EL +P D P +++RSL +L   A
Sbjct:   58 GTLSNGMRYYIRANKQPQNRAEIRLVVNAGSVLEDDDQRGLAHFVEHMAFNGTRHFPKHDVIAFLQSTGMRFGAHINANTSFDQTVFELRIPTDSPAVIDRSLLILEDWA 167          
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Match: A0A835ZEV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.840e-29
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 GELANGMEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTCPQEFDL---LESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQLALEV 333
            GEL NGM+YYV  N  P+ R EL + IK GS+ E   ERGVAH++EHL FR+S     EF++   LE+ GIKFG HQNAYTSF+ TVY+L VP D   +L++ +R L QL+L++
Sbjct:  144 GELENGMKYYVLHNPEPQNRVELSVAIKSGSIHEANNERGVAHMVEHLGFRSSEGMEGEFEIIKQLEALGIKFGPHQNAYTSFDRTVYQLQVPLDDMDMLKQGMRALCQLSLQM 257          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1146.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUN6_ECTSI1.180e-6196.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2T2_9PHAE4.530e-3486.49Peptidase_M16 domain-containing protein n=1 Tax=Ec... [more]
A0A3D4TEG6_9BACT4.770e-3349.56Peptidase_M16 domain-containing protein n=1 Tax=Ch... [more]
A0A7S0MFY0_9CRYP3.760e-3155.75Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A2V8LLW8_9BACT1.030e-3050.91Peptidase_M16 domain-containing protein n=2 Tax=Ac... [more]
A0A2V8Q3U4_9BACT1.020e-2951.82Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7C6ADJ7_9BACT1.190e-2950.91Insulinase family protein n=1 Tax=Ignavibacteria b... [more]
A0A7Y4UD36_9BACT2.420e-2950.91Insulinase family protein (Fragment) n=1 Tax=Acido... [more]
A0A143PHD1_LUTPR5.650e-2950.00Protease 3 n=4 Tax=Luteitalea TaxID=2004797 RepID=... [more]
A0A835ZEV6_9STRA5.840e-2953.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1146contigEcto-sp13_S_contig1146:588..2104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score202.2
Seed ortholog evalue1.2e-49
Seed eggNOG ortholog2880.D7FUN6
Model size336
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons3
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
Cds size318
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462600.5527887-CDS-Ecto-sp13_S_contig1146:587..7371681462600.5527887-CDS-Ecto-sp13_S_contig1146:587..737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1146 588..737 -
1681462600.5651171-CDS-Ecto-sp13_S_contig1146:1039..11411681462600.5651171-CDS-Ecto-sp13_S_contig1146:1039..1141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1146 1040..1141 -
1681462600.5747514-CDS-Ecto-sp13_S_contig1146:2020..20861681462600.5747514-CDS-Ecto-sp13_S_contig1146:2020..2086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1146 2021..2086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462600.5849462-UTR-Ecto-sp13_S_contig1146:2086..21041681462600.5849462-UTR-Ecto-sp13_S_contig1146:2086..2104Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1146 2087..2104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1146.1278.1prot_Ecto-sp13_S_contig1146.1278.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1146 588..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1146.1278.1

>prot_Ecto-sp13_S_contig1146.1278.1 ID=prot_Ecto-sp13_S_contig1146.1278.1|Name=mRNA_Ecto-sp13_S_contig1146.1278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MEYYVRANRHPRERAELRIVIKVGSVLETEQERGVAHLIEHLAFRASRTC
PQEFDLLESHGIKFGAHQNAYTSFEETVYELHVPADQPVLLERSLRVLRQ
LALEV*
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mRNA from alignment at Ecto-sp13_S_contig1146:588..2104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1146.1278.1 ID=mRNA_Ecto-sp13_S_contig1146.1278.1|Name=mRNA_Ecto-sp13_S_contig1146.1278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1146:588..2104- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAGCTCGCCAACGGCATGGAGTACTACGTCCGAGCCAATCGACACCC GCGAGAGCGAGCTGAGCTCCGCATCGTCATCAAGGTATAAAAGTCGCGCT CAAAGGGGTTTAGCGAATGAGGTCCAACTGAAGCTTCGATCCTGGCAACT CGGCCGAGTCCTCTATCGAGATTGTATACTGTTGACCACATCCATGGACG ATGCCAGGTTAGGGCTATGATGATGACGGAATTGGTGGTTTTGCTCTGGG GTAGGGTTAGACGATAACGCTCGTAACACTTGGTGCAGCTCTCGAGACAC CCGCACTCAAAAGGCTGTGCAGAACAAGCAACTGGCCATGCATTGGTTGC CACACACGCGGGGAAGAAAATGAGGAGCTTCTTCTTAAGCGCTAGCCGTA CATGGTTGGCTTATTTTTTCGATTGTCATATACTCCCTCGCGCGCATCTC AAAGACTGGGGGGGAGGGGGGGCGATTGCTTAGTCCATCTCCGGCGTCCA CTGTGAAGGCGTGTTTCTTGACATGGCTCCTTCTCCTTCTTCTTTGTTTA ATCATCGACTTTTGCATAGCGCACTAGTATGCGTTCGTCTCGGGCGCTCA TCGAGAAACCGGTGGAATTCCGGCACGAAAATCAGATGGAATCATCCCGT CATGAACATCGTCCTGTCATGGAAATCAGATCGAATCGTCTCGTCATCAA TATCAGATGGAATCACCCCGTCATTTAAATCAGTGGAATCATCCCGGCAT GAAGAACAGGTTGCCTCTGGTCACGAAAACACAGATGGAGTTCGGTCTCG ATAATGGTGAATCATGAGGATCCCCGTGATGAAGACAGCCGGGAAGGGCT TCCTTTGTTCGCCGTCCCCCCCCCCCCCCACCCGCTCCCCTTCTCTCTTG CATCGCGCTGGTTGAAAGTAGAGGGCTAAGTCTTGCGCGCGCGCCGATTG CAACGTCACACAGGTGGGGTCCGTGCTGGAGACGGAGCAAGAGCGGGGGG TTGCGCACCTGATCGAGCATCTGGCGTTTCGCGCCAGCAGGACCTGTCCG CAGGAGTTCGACCTAGTCAAGGAGGCAAGTTTTTCGTGGGGAAGGCGGTT TTTTATTGCCGTGTGGGGGCTTCCGTTCGTGATGTAACGGGCGCTAGCGT CCCTCTACAGCTGGCCGAACGACCAAGCCGGTCCGGACAGAAACCAAACC GAGTGCGAAACATGGGAAAACGAGAACGCCGATCCGACCCGTCCTTTTGC TGCTTTGGATACTTGTGTATATGCGTGCGATGTCGAAATCCTCCTCTTTA CTTTGTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTACTCC TCCTCTGATACCCCCAGTTGGAGTCGCACGGCATCAAGTTCGGAGCGCAC CAGAACGCCTACACGTCTTTTGAGGAGACGGTTTACGAGCTGCACGTGCC AGCCGACCAGCCGGTGCTGCTGGAGAGGAGCCTCCGGGTGCTTCGACAAC TCGCGCTCGAGGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1146:588..2104-

>mRNA_Ecto-sp13_S_contig1146.1278.1 ID=mRNA_Ecto-sp13_S_contig1146.1278.1|Name=mRNA_Ecto-sp13_S_contig1146.1278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1146:588..2104- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTACTACGTCCGAGCCAATCGACACCCGCGAGAGCGAGCTGAGCT
CCGCATCGTCATCAAGGTGGGGTCCGTGCTGGAGACGGAGCAAGAGCGGG
GGGTTGCGCACCTGATCGAGCATCTGGCGTTTCGCGCCAGCAGGACCTGT
CCGCAGGAGTTCGACCTATTGGAGTCGCACGGCATCAAGTTCGGAGCGCA
CCAGAACGCCTACACGTCTTTTGAGGAGACGGTTTACGAGCTGCACGTGC
CAGCCGACCAGCCGGTGCTGCTGGAGAGGAGCCTCCGGGTGCTTCGACAA
CTCGCGCTCGAGGTGTGA
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