mRNA_Ecto-sp13_S_contig1144.1271.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1144.1271.1
Unique NamemRNA_Ecto-sp13_S_contig1144.1271.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1144.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1144contigEcto-sp13_S_contig1144:18075..18706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size632
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462599.8194444-UTR-Ecto-sp13_S_contig1144:18074..180861681462599.8194444-UTR-Ecto-sp13_S_contig1144:18074..18086Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1144 18075..18086 +
1681462599.8361871-UTR-Ecto-sp13_S_contig1144:18416..187061681462599.8361871-UTR-Ecto-sp13_S_contig1144:18416..18706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1144 18417..18706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462599.8277557-CDS-Ecto-sp13_S_contig1144:18086..184161681462599.8277557-CDS-Ecto-sp13_S_contig1144:18086..18416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1144 18087..18416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1144.1271.1prot_Ecto-sp13_S_contig1144.1271.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1144 18087..18416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1144.1271.1

>prot_Ecto-sp13_S_contig1144.1271.1 ID=prot_Ecto-sp13_S_contig1144.1271.1|Name=mRNA_Ecto-sp13_S_contig1144.1271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MKTDHYTKRQRVRLSSGTQQTTNTATGNQPASRPQHTTVVGRLEACHIAT
ELCSKRTTQTFRKIHVTLLTLSNKTCCVVAQRCDNSYRQQHHLNVRRHHH
ERSPRTFML*
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mRNA from alignment at Ecto-sp13_S_contig1144:18075..18706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1144.1271.1 ID=mRNA_Ecto-sp13_S_contig1144.1271.1|Name=mRNA_Ecto-sp13_S_contig1144.1271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1144:18075..18706+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGACAACATCATGAAAACAGACCATTACACAAAGCGGCAGAGAGTGCG
GTTAAGTTCGGGCACTCAGCAAACAACGAACACAGCAACGGGCAACCAAC
CAGCCAGCCGACCTCAGCACACGACGGTGGTTGGCCGTCTGGAGGCATGC
CATATCGCAACTGAACTGTGCTCGAAACGGACCACACAAACGTTTAGAAA
GATACATGTCACACTGCTAACCCTCAGCAACAAGACGTGTTGTGTTGTCG
CTCAAAGGTGCGACAATTCTTACCGCCAGCAACACCACCTAAACGTCCGC
CGACACCACCACGAACGTTCGCCACGAACGTTCATGTTATGAATCCTTCA
GGAAAGGAACTTGAGCAACGCGAGTGTGTTCGCCAAATATGAGCCATGTG
CGTGTTTACCCGCTCACCTACAAAAAGCGCGACACGAAGAGGTACACACA
CAAGCGAGGCACACTGGTAGATGGCAAAACGCTTGGTGCACACAGCAGTA
GGGTGTGGCAGGATAAACACGTGCGCCTTCAGCCAGTGAACCTCTTCCGG
GTTGTTGCCATGGTTTCCCGAGGTTCTCCGAATCCTTGCATCCCCGCCTA
TCCGCACGCAAGCTAAACATGCGCGAGTCCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1144:18075..18706+

>mRNA_Ecto-sp13_S_contig1144.1271.1 ID=mRNA_Ecto-sp13_S_contig1144.1271.1|Name=mRNA_Ecto-sp13_S_contig1144.1271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1144:18075..18706+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAACAGACCATTACACAAAGCGGCAGAGAGTGCGGTTAAGTTCGGG
CACTCAGCAAACAACGAACACAGCAACGGGCAACCAACCAGCCAGCCGAC
CTCAGCACACGACGGTGGTTGGCCGTCTGGAGGCATGCCATATCGCAACT
GAACTGTGCTCGAAACGGACCACACAAACGTTTAGAAAGATACATGTCAC
ACTGCTAACCCTCAGCAACAAGACGTGTTGTGTTGTCGCTCAAAGGTGCG
ACAATTCTTACCGCCAGCAACACCACCTAAACGTCCGCCGACACCACCAC
GAACGTTCGCCACGAACGTTCATGTTATGA
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