mRNA_Ecto-sp13_S_contig11426.1258.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11426.1258.1 vs. uniprot
Match: D8LH14_ECTSI (PHM7_cyt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH14_ECTSI) HSP 1 Score: 521 bits (1343), Expect = 7.400e-176 Identity = 264/273 (96.70%), Postives = 266/273 (97.44%), Query Frame = 1
Query: 1 IRQLQEKRSKASRKIIHFAAEAKMAVMMTNKAVAAYVTFDDEMAAVEARVSYSGSWITRLCVKEKMKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLLVGTSFITLSIAMSIYALYQNQQAESEGGTAECPEGWDALSRREKEDAVAEDGTILHCLCDGGDGSAWTLSPNDVCYEYAWAKVQVTWLVLGTSFMVAFTNAAINKITRMMGVFEKHLSVDKQEVAVYRRLVLLKFVNIGLTVLVTNSRRVIDVLGVSLDYEEDFTSEW 819
IRQLQEKRSKASRKIIHFA EAKMAVMMTNKAVAAYVTFDDEMAAVEARVSYSGSWITRLC KE MKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLL+GTSFITLSI MSIYALYQNQQAESEGGTAECPEGWDALSR E+EDAVAEDGTILHCLCDG DGSAWTLSPNDVCYEYAWAKVQ TWLVLGTSFMVAFTNAAINKITRMMGVFEKHLSVDKQEVAVYRRLVLLKFVNIGLTVLVTNSRRVIDVLGVSLDYEEDFTSEW
Sbjct: 418 IRQLQEKRSKASRKIIHFAMEAKMAVMMTNKAVAAYVTFDDEMAAVEARVSYSGSWITRLCAKENMKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLLIGTSFITLSIGMSIYALYQNQQAESEGGTAECPEGWDALSRWEQEDAVAEDGTILHCLCDGADGSAWTLSPNDVCYEYAWAKVQATWLVLGTSFMVAFTNAAINKITRMMGVFEKHLSVDKQEVAVYRRLVLLKFVNIGLTVLVTNSRRVIDVLGVSLDYEEDFTSEW 690
BLAST of mRNA_Ecto-sp13_S_contig11426.1258.1 vs. uniprot
Match: A0A7S2PSB5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSB5_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.990e-25 Identity = 79/248 (31.85%), Postives = 126/248 (50.81%), Query Frame = 1
Query: 94 AVAAYVTFDDEMAAVEARVSYSGSWI--TRLCV-KEKMKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLLVGTSFITLSIAMSIYAL-YQNQQ-AESEGGTAECPEGWDALSRREKEDAVAEDGTILHCLCDGGDGSAWTLSPNDVCYEYAWAKVQVTWLVLGTSFMVAFTNAAINKITRMMGVFEKHLSVDKQEVAVYRRLVLLKFVNIGLTVLVTNSRRVIDVLGVSL-DYEEDFTSEW 819
A+ A+VTF E V+A +Y SWI T C ++K +GK++ +++APEPSTILWEN + R+ T V S I +S+ + A +QN+ A+SE CPE + E+ V+ D ++LHC C + S + CY+Y + ++ + G + + N + G FEKH SVD+ E ++ R+ LLKF+N G VL+ N + ++ + D + DF +W
Sbjct: 759 AIQAFVTFRSEEGGVKAMKAYQLSWIRSTLFCFYPRRLKFRGKKLYIDKAPEPSTILWENLEHGYFNRMCRKGVTNTVALSAILVSVVFTFMARDFQNKTLAKSE---MPCPEDFTDAPENEQLSIVSSDESLLHCYCT--NLSILDQGRSSECYDYLKSNLESMAMSYGAAATICIMNVFFTWLMTKAGSFEKHHSVDRMEASIMFRVFLLKFINTGCLVLLFNQAWLQHMVNIEFEDKQPDFGVQW 1001
BLAST of mRNA_Ecto-sp13_S_contig11426.1258.1 vs. uniprot
Match: K0SAW4_THAOC (PHM7_cyt domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAW4_THAOC) HSP 1 Score: 108 bits (270), Expect = 5.860e-23 Identity = 77/252 (30.56%), Postives = 119/252 (47.22%), Query Frame = 1
Query: 91 KAVAAYVTFDDEMAAVEARVSYSGSWITR--LCVKEKMKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLLVGTSFITLSIAMSIYALYQNQQAESE---GGTAECPEGWDALSRREKEDAVAEDGTILHCLCDG-GDGSAWTLSPNDVCYEYAWAKVQVTWLVLGTSFMVAFTNAAINKITRMMGVFEKHLSVDKQEVAVYRRLVLLKFVNIGLTVLVTNSRRVIDVLGVSLDYEED---FTSEW 819
+A+ A+VTF+ E V+A +Y+ SWI R C ++ KG R+ +++AP+PSTILWEN Y + R+ T TS L+I S+Y + + + E + CP G+ + V +D + HC C W+++ C+++ Q T +V FTN + G FEKH S+D+ E + R+ LLKFVN G VL+ + ++GV D F EW
Sbjct: 318 RAIQAFVTFETETGFVKAMANYNLSWIRRNCCCYPTRLLFKGSRVDIDQAPQPSTILWENLEYTSGQRLVRKCLT----TSVALLAILFSVYITFLARDYKGEVLHKASRPCPSGFFEQDPAYQLKVVEQDLDLSHCYCRTLSIFKQWSINQ---CHDHLLTSSQATATSYAAGLIVVFTNIFFTILMDRAGRFEKHHSLDEMEASNMVRVFLLKFVNTGCIVLLYGQTWLQRLVGVQFSDASDLNTFGVEW 562
BLAST of mRNA_Ecto-sp13_S_contig11426.1258.1 vs. uniprot
Match: F2E1A3_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E1A3_HORVV) HSP 1 Score: 57.8 bits (138), Expect = 8.560e-6 Identity = 53/234 (22.65%), Postives = 105/234 (44.87%), Query Frame = 1
Query: 97 VAAYVTFDDEMAAVEARVSYSGS----WITRLC----VKEKMKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLLVGTSFITLSIAMSIYALYQNQQAESEGGTAECPEGWDALSRREKEDAVAEDGTI--LHCLC-DGGDGSAWTLSPND--VCYEYAWAKVQVTWLVLGTSFMVAFTNAAINKITRMMGVFEKHLSVDKQEVAVYRRLVLLKFVNIGLTVLVTNSR 759
V+A+VTF A + ++ + +I +C V++K+ +GK + + A +P +ILWEN G + ++ RR +L + + + I + Y + + T +C + D +D + L C C D G + + PN+ +C + K+ T + F+V N + + + + FEKH +++ Q + +F+N GL +L+ N++
Sbjct: 227 VSAFVTFSSIPARNKILDAFISTPFERFIRAICGGGNVQDKV-FEGKVLRAKSAADPGSILWENIGESKTNVYGRRAFSLALTVILWGTTAILLIVSTYYKNEFKKNFPTVDCGDYGDVTIDEAAKDYALGQYQVGKLECYCSDDLVGRLYDIFPNNQTLCVTWFNNKLIETSVTFAIVFIVLVINYGVQFVFQALSKFEKHSTLNNQLATRVIKTFAAQFLNTGLLLLLINAK 459
BLAST of mRNA_Ecto-sp13_S_contig11426.1258.1 vs. uniprot
Match: A0A812WSS5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WSS5_9DINO) HSP 1 Score: 55.8 bits (133), Expect = 3.360e-5 Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 94 AVAAYVTFDDEMAAVEARVSYSGS--WITRLCVKEKMKLKGKRISVEEAPEPSTILWENYGYRRCELWTRRTATLLVGTSFITLSIAMSIYALYQNQQAE 387
AV A+VTF+ E + + Y GS ++ R+ + ++++G+ +SVE+AP PS +LWEN + W R ++ I S + +YA + +AE
Sbjct: 358 AVGAFVTFNHEESLIRCLDEYHGSNTFLGRMRQPKLLRMRGQPVSVEQAPNPSDVLWENLEVTDFQRWKRSFIIGIITLLLIAGSFGIVLYAKVERTKAE 457 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11426.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11426.1258.1 >prot_Ecto-sp13_S_contig11426.1258.1 ID=prot_Ecto-sp13_S_contig11426.1258.1|Name=mRNA_Ecto-sp13_S_contig11426.1258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp IRQLQEKRSKASRKIIHFAAEAKMAVMMTNKAVAAYVTFDDEMAAVEARVback to top mRNA from alignment at Ecto-sp13_S_contig11426:2151..5365+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11426.1258.1 ID=mRNA_Ecto-sp13_S_contig11426.1258.1|Name=mRNA_Ecto-sp13_S_contig11426.1258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11426:2151..5365+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11426:2151..5365+ >mRNA_Ecto-sp13_S_contig11426.1258.1 ID=mRNA_Ecto-sp13_S_contig11426.1258.1|Name=mRNA_Ecto-sp13_S_contig11426.1258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11426:2151..5365+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |