mRNA_Ecto-sp13_S_contig11424.1257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11424.1257.1
Unique NamemRNA_Ecto-sp13_S_contig11424.1257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11424.1257.1 vs. uniprot
Match: D7FQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ26_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 9.160e-87
Identity = 208/272 (76.47%), Postives = 218/272 (80.15%), Query Frame = 2 
Query:    2 MVDDRSAAHFTAP---NRAHNTLHFSLALLPL---SKHQNAPICAPEGGRETRRQRLLGQELERRTRGRPPPHIMACPTGKACAESLLDMDKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVSLAACVVAATHVTFFFALPLVSAAGGAFLVAAPEMTPFGTDPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPAFTKRIQSGKPAEPAVLSC 799
            MVDDRSAAH TAP   +R+ + LH SL+       S HQ       +GG     + L   + E RTRGRPPPHIMACPTGKACAESLLDMDKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVS                    SAAGGAFLVAAPEMTPFG DPAA+LLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPAF++RIQSGKPAEPAVLSC
Sbjct:    1 MVDDRSAAHLTAPQSTDRSISVLHSSLSANTKTHPSVHQKEE--ERQGGHACLEKSL---KEEMRTRGRPPPHIMACPTGKACAESLLDMDKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVSXXXXXXXXXXXXXXXXXXXASAAGGAFLVAAPEMTPFGADPAALLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPAFSRRIQSGKPAEPAVLSC 267
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11424.1257.1 vs. uniprot
Match: A0A6H5JCD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD4_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 5.460e-72
Identity = 140/198 (70.71%), Postives = 141/198 (71.21%), Query Frame = 2 
Query:  206 MACPTGKACAESLLDMDKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVSLAACVVAATHVTFFFALPLVSAAGGAFLVAAPEMTPFGTDPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGPAFTKRIQSGKPAEPAVLSC 799
            MACPTGKACAES LDMDKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVS                    SAAGGAFLVAAPEMTPFG DPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMA                          XXX         AGPAFT+RIQSGKPAEPAVLSC
Sbjct:    1 MACPTGKACAESPLDMDKCTSSTKSRYFVGISPAVVFVASLSVLAFLAVSXXXXXXXXXXXXXXXXXXXASAAGGAFLVAAPEMTPFGADPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAAALGTMAAALVADEPSALAGDVGDKAAVALGRAXXXAATGALMSAAGPAFTRRIQSGKPAEPAVLSC 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11424.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ26_ECTSI9.160e-8776.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCD4_9PHAE5.460e-7270.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11424contigEcto-sp13_S_contig11424:288..5385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size802
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007720.1
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462599.0428066-UTR-Ecto-sp13_S_contig11424:287..2881681462599.0428066-UTR-Ecto-sp13_S_contig11424:287..288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11424 288..288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462599.0518167-CDS-Ecto-sp13_S_contig11424:288..4641681462599.0518167-CDS-Ecto-sp13_S_contig11424:288..464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11424 289..464 +
1681462599.0599043-CDS-Ecto-sp13_S_contig11424:4760..53851681462599.0599043-CDS-Ecto-sp13_S_contig11424:4760..5385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11424 4761..5385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11424.1257.1prot_Ecto-sp13_S_contig11424.1257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11424 289..5385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11424.1257.1

>prot_Ecto-sp13_S_contig11424.1257.1 ID=prot_Ecto-sp13_S_contig11424.1257.1|Name=mRNA_Ecto-sp13_S_contig11424.1257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MVDDRSAAHFTAPNRAHNTLHFSLALLPLSKHQNAPICAPEGGRETRRQR
LLGQELERRTRGRPPPHIMACPTGKACAESLLDMDKCTSSTKSRYFVGIS
PAVVFVASLSVLAFLAVSLAACVVAATHVTFFFALPLVSAAGGAFLVAAP
EMTPFGTDPAAVLLLRAGGALAIAYAGSAMLVGKCCPAKVRSAHLALVAA
ALGTMAAALVADESSALAGDVGDKAAGALGRAAAAAAAGAVMSAAGPAFT
KRIQSGKPAEPAVLSC*
back to top

mRNA from alignment at Ecto-sp13_S_contig11424:288..5385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11424.1257.1 ID=mRNA_Ecto-sp13_S_contig11424.1257.1|Name=mRNA_Ecto-sp13_S_contig11424.1257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11424:288..5385+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGGTGGACGACCGGTCTGCAGCCCACTTCACAGCTCCAAACAGAGCAC
ACAACACACTCCACTTCAGCCTTGCGCTCCTCCCTCTCTCCAAACACCAA
AACGCACCTATTTGTGCACCAGAAGGAGGGAGAGAGACAAGGAGACAACG
CTTGCTTGGACAAGAGCTTGAAAGAAGGTGTGTTGCTGTTTCTCCTTGGA
GAGCCAGATTAGATGCCGTCGCGGTTTTGGGCGCTCAAACACGCTTTTTC
ATGATGCGTTTTTTATCCGCACGGCCTGTTTCCGGACTAGGTATTTCAAA
CGATGTGTTGTGTCTGCATCGGCTAGAGGTGGCAACAGTAATGGGAAGCT
GACACCCGGGACCTTACGCCAGTATGCCAAGGAAGAGTGGCCAAGGCCTT
CACCGAAACGGAACGGTGTGCGTGTCTGCCTTGTTTGGAATCTTCCCGAC
AGCGCCGTGAACTTTCTCGGTAACCGCCACGATTTCGTGATTGCCGGACC
AGGGCGCCGAGAAGCTGAAGCACACACATCATCACCTCCCTTACGACACC
ATGATTCGCCCTAGCAATCACCGTGTTGTAGATGGCACTGGTGATAAGTC
CGTTAGGGTTCTTCTGGCGAGTACTTGTTGAGTCCCAGACGTTTGGCAAC
ACGAAGTGTTTTGGGGGCCATGATAAACCGTGACGTCGGTGAGAGTCTAA
AGAGACGGACAACAGCAGTATGGCTGCAGAGAGAACAACGTCCAAACGAG
AAGTCAGTAGCCGTCTTTCCTCTACTTCGCATCACGCCTTCCCCATGAAC
CTTTGCAGCAGCAGACTTCTCAACGAAGTTGTATGCAGCGAATGTGGTGG
TTGCGGTAGCCCACGGCCCTCTTCCTCTCTCCGCTGCACAGGATCCATAC
GCAAGAAGCTCGGAATGTTCATCTTGTTTTGAACTCCGTGTACGACGTGT
GACGGTAGATTGGTCGTCTACCGTCTACCGCACATTCTCAACTACTATTA
TAGCTTCTGGGGTTATCGCAAGGGATAGCCGCGAAGCGCATCGTGTCGTT
CCCAGGCATCAGACGAAAGACGACCGTTCTGCCGCCAGCTGACGCATCCC
TTACCTCGCAACCACCAATAAAGCCAGAAATAGGGTCGGCGTGATTGCAA
CGAGTCACGTCTCGCTCAAAAATCAGAGATCAGATACTCTCCGCCTTCAT
TTCGCGTGCCCCCCCTCGGCGCGGGCTTGTGCTATCCGCCACCGCCACGC
ACACCGTCATGACTCAAGCATCGCGGAAACCGTCCGACCCCGATGATTAG
CGTGCCGACGGCGTGTTTGTAGTTGTAACACTCCAATGGCGATGCTGTTT
GGCGTGATCTATGGTCGGGTGATGCCGTGATGTGAGCAGTGTTCACCGCC
CCCCTTCGTGGGGAGTCATCGAACTTCAGTAGCACCGAACCCGTGCAATA
TCGACCTGTGTCGGTTTTTTCCTCGGACAGCAACGTCCATTATCAACTTG
TTGTGTTCACGAGCGCGTTGAGGGAGACCTGATATTGCTTGGTTATTGTG
CAGGTAGAGGGTTACCCGTTCGGCGTCTATCCCTTCACCGTATATGTTAG
GGTGTCATACATGTAGGAGAAACATGGACCGCAGGATCAGTATTCGTATG
TATTTGACGTACCACACGCATATGATACAGCAGATTTCATGTATGCGTAG
TATTACTCGTTCACTTCCTTCCATCCGAAGATTGTTGCCGCCGATTCACG
TGAAACAATTTTGTGAACATGACTCTTAACCCGTCTACTGCTGTAAACAC
GCAGTTCCTCCGCAAAACAAAAACTCGCGATGTTTTGGTCAGTCAGAGAG
CGGAGAATGCCACGCCCCTTGCAAGACGAAGGTTGACTTGGCTTCAGCAT
TGACTGTTTCCCTCAATACGTAGAATACTTGAACTGCAGCATCGGATGTA
GACTACCTCTTTTAACTCGTAAAGGACACGCGGCTCGGGAGATTCTGTAC
AGCAAGTCTGAGGCCTGGGGGCGGCATCACACAGCGCATCACAGAGCATA
TCTCCTCACCAAAGCACGATGGACCAACGGTTATCACGTGCGCTTCACAC
AGCGGAGCTTACGGCGACCACGGTGCGGTGACCAGACTTTTTGAGTGCTT
GTTGTCCTTAAAGTTTCTTCATTTGGGCGTCCGGTAGTAAACAAACGAGG
GGTAAGGTGTCGGGTTAGCTCTCCGAGACGAAACGGCATGTTCCATACAC
CCCATTGCCAACATATTTCCGCCTAGGGTTCGCCACTGGTAAACAACCGC
AGGCTTGTGCTTCTCGCCTGCGAGTAGAAGTCGCGGTCTGCCGTTTTCTT
GGATGTGCCGATTGCTAGTTGCGGGCCTTGGCGCCTTTCGATGTACACGT
TCTCACGCTCTACATCTCAACCACCCGCACCCGCTCGCAACGTGAGGACG
GGCACCCTTTTATCTAGTGAGTGTCGACATGTGCCCCCACGTGGTAACCG
TTGGACTTGATTGTCTTCGAGGATGGTGCACAACGTGTCTCATGAGCTCA
TTGTGCGAAGGTTGTTGTTTTGTCGTTCGGCCAAAGAGTAGGGTCAATTT
TGTCCCTGGTACGGGATAAAAAATGTCGTACTTGCCGCGACATGCCCTCG
TATACATGCTGCTGTACGACCCACACTCTGAGTGTTTCACGCTTCTCGGA
TACACGTATGACTGTGTAGTGGTACCAATCGTGGGGTGCTAGGTACCATA
TTGGTTCTCTGTGGTGGGGTACAGGATGTCTTGACGGGAACCACGACATA
AGAGCTTTTTATTTGTCCCCAACAACGGCAGCAAGGTTTCCACCGACGTC
GCGTCCGATCTGCCAGTCTTGATAAAAAGCGTTTTATCTCGCCTTAAAAA
TATGTATTTCAGGAGTACCTATCCCGATTGATTACAGTCGACCCCGCTTT
AAAGACGCTCTTCTTAAGAAAACTCCCCGCGGCAAAGACACAAGTTTTTT
CAGAAACGTGGTGCTCTGTAAATGCAAAATGTCGTAGGGGGGTATCATTC
CAACTTCACGCCCCCGCTGGCATTTGCCTCGCCAGGCGTGTTTGTATGGC
TGAAGTGTTTAGGGCGTTTGAGACGTGGCTTAATGTAGAGGACGACCCAC
AGGTGTTGGAAGACGAGGCGGGACTTGAAATAAATGCAGGCGGTGTCAAA
GCAACTCGCCAAATTAGAAGTTGACGAGGATAAGGGTGATGTATCAAGCG
AGGAGGAAGACGGCCGCAGGCCTGAGTCGTGCATTACGTCGTGAATCACC
GAGGCTGAGGTCCACTCGCGTCTTGGGCAAGTTCGCTCCTATTCGTACGT
GTAGGGGAGGCATGGCGAATACCGCGAAACTCTGTACCTGCTTTCCAGAG
CGGTGCATTCATTTACTCATGAAACGCAAGTCAAGGGAAGGAGCGGGGGG
AAGTGCAATCCACGATTCGCGATTTGTGGAAGAAGTAATAGTCTACTCCG
TTCGTTGCAGTCCGTGAGTCGCAGTCTTCGTTGTATCCTTGTTGCACACT
GTGAAGCATGTAACCTGCAGGAAAACCAGTGGGTTGAGCGTACCCTACCG
TGGATCAGTTGATCAATCGTGTGTTTGGTGTGCTCTAGGTAAAGGGTTAC
CAGATGTTGCGTAAATATAGCGTCGATTAAAGTTCAATACGTTTCCACGA
CTTGCCCGGTGCGTTGCATGTATTTTTCTTCGGCGCTGTAATGCTGCTGC
TCAAGGCGCATCTTTTGGCGCATGGCACGCCTCCATCGACCCCGGGGATA
GTGAGATACTGTCCCCGGATGCCTTGAAGAAAATCCCCGCGTTAAAGAAA
CAAAAAAAAATGAAAACGAGTTGTGTCTTTAAAGCGGGGTCGACTGTGTA
CATTGTTCTGTCACCCAGCATATCTCTGGCAAGTTTTCCTGGCAAAATTC
CTGTAGCACCATGGAAGTGCCGCACCTCTGTTGTGAAATGCGCAGACAAA
TTTGACCGGCTGTTGGGCTGGCACTACTGACAACTCAACGAGTTTTCCCG
TGTTGATGTGGCACCATCCAACCGCACAAAACCCGTGTCGCCATATCTGC
GATTGCCGCCCGGGGTAAATCGGTTTGAGGATTCGGTAACGAAATGGGAC
GGTAACAATGCAGTTCGAATGGTGAACGGTACCAAAATGTGTCGGCACAA
GTTCCCTTGGGTGGTCAGCGGTATATCTAAATGAGGCGATAGGCCGCCAC
CTACGCAAGTGACACTAAATATTATACTCCACATTATGTTCCCGGTAAGG
CATTGAACCGATCACCAGAAAAGCTAAATATTTGCCGCGTTGTTACACAC
TTTGGGTAAAAACGAAAGACAGCCTTGACAATTTCATCTCTGACGTGTAA
CCCCTTGTCTCACTTCCCTCCCCCACCCCCGGCCTCCCGTCCCCCCCGTT
GTCCCCCTCTCGACTCCGCAGAGAACTAGAGGAAGACCACCACCACACAT
CATGGCTTGCCCCACAGGAAAAGCGTGCGCGGAGTCCCTTCTCGATATGG
ACAAGTGCACCTCCTCCACCAAGAGCCGGTACTTCGTGGGCATCTCGCCC
GCGGTCGTGTTCGTCGCGTCCCTCTCGGTCCTGGCCTTCCTCGCCGTCAG
CCTGGCTGCCTGCGTCGTCGCCGCCACCCACGTCACCTTCTTCTTCGCAT
TGCCGCTCGTCTCGGCGGCCGGGGGAGCGTTCCTCGTCGCCGCCCCGGAG
ATGACGCCGTTCGGCACCGACCCGGCGGCCGTGCTACTCCTCAGAGCAGG
GGGAGCGCTGGCGATCGCCTACGCGGGGAGCGCGATGCTCGTGGGGAAGT
GCTGCCCTGCCAAGGTTCGGTCCGCCCACCTGGCGCTGGTAGCGGCGGCG
CTCGGGACGATGGCCGCCGCGCTCGTCGCGGACGAGTCCAGCGCACTCGC
CGGTGACGTCGGAGACAAGGCCGCCGGTGCGCTCGGGCGGGCGGCGGCGG
CTGCGGCCGCGGGGGCCGTGATGTCGGCCGCCGGCCCCGCCTTCACCAAG
AGGATTCAGAGCGGGAAGCCAGCAGAGCCGGCGGTGCTGAGCTGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11424:288..5385+

>mRNA_Ecto-sp13_S_contig11424.1257.1 ID=mRNA_Ecto-sp13_S_contig11424.1257.1|Name=mRNA_Ecto-sp13_S_contig11424.1257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11424:288..5385+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACGACCGGTCTGCAGCCCACTTCACAGCTCCAAACAGAGCACA
CAACACACTCCACTTCAGCCTTGCGCTCCTCCCTCTCTCCAAACACCAAA
ACGCACCTATTTGTGCACCAGAAGGAGGGAGAGAGACAAGGAGACAACGC
TTGCTTGGACAAGAGCTTGAAAGAAGAACTAGAGGAAGACCACCACCACA
CATCATGGCTTGCCCCACAGGAAAAGCGTGCGCGGAGTCCCTTCTCGATA
TGGACAAGTGCACCTCCTCCACCAAGAGCCGGTACTTCGTGGGCATCTCG
CCCGCGGTCGTGTTCGTCGCGTCCCTCTCGGTCCTGGCCTTCCTCGCCGT
CAGCCTGGCTGCCTGCGTCGTCGCCGCCACCCACGTCACCTTCTTCTTCG
CATTGCCGCTCGTCTCGGCGGCCGGGGGAGCGTTCCTCGTCGCCGCCCCG
GAGATGACGCCGTTCGGCACCGACCCGGCGGCCGTGCTACTCCTCAGAGC
AGGGGGAGCGCTGGCGATCGCCTACGCGGGGAGCGCGATGCTCGTGGGGA
AGTGCTGCCCTGCCAAGGTTCGGTCCGCCCACCTGGCGCTGGTAGCGGCG
GCGCTCGGGACGATGGCCGCCGCGCTCGTCGCGGACGAGTCCAGCGCACT
CGCCGGTGACGTCGGAGACAAGGCCGCCGGTGCGCTCGGGCGGGCGGCGG
CGGCTGCGGCCGCGGGGGCCGTGATGTCGGCCGCCGGCCCCGCCTTCACC
AAGAGGATTCAGAGCGGGAAGCCAGCAGAGCCGGCGGTGCTGAGCTGCTA
G
back to top