mRNA_Ecto-sp13_S_contig1142.1255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1142.1255.1
Unique NamemRNA_Ecto-sp13_S_contig1142.1255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1142.1255.1 vs. uniprot
Match: A0A6H5KNG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG9_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.130e-44
Identity = 99/158 (62.66%), Postives = 107/158 (67.72%), Query Frame = 2 
Query:  230 ETMKAVAEAGLVPDLDMFVAAAEACSSAGDVAGALHF*DQADKLASQRGSNAREPGPSPSQGEVGDENXXXXXXXXXXXXXXXXXXXXXXLSQQQRYSVVSRERASRPEYRSGNARTGHGPPPAPVRAMARLETTARPAGKEVDAKGAEIEQETLSIL 703
            + MKAVAEAGLVPDLDMFVAAAEACSSAGD AGA+HF DQADKL SQRGS+AR                                      S+QQRYSVV+ ERASR EYRSGNA+TG GPPPAPVR +ARL  TARP GKEVDAK  E+EQETLSIL
Sbjct:  234 QIMKAVAEAGLVPDLDMFVAAAEACSSAGDDAGAMHFCDQADKLVSQRGSHARR-------------------------------AAKRRFSEQQRYSVVTPERASRQEYRSGNAKTGRGPPPAPVRTVARLAATARPGGKEVDAKRTELEQETLSIL 360
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1142.1255.1 vs. uniprot
Match: D7G8U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.090e-20
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 3 
Query:  336 ISRTRRTSSHRNEEATHVSRVPRRRKERWGTKTINSRTMMMTMMEVAQVERRNVAFLNSSGTALSAASV------LRGQNIEVG 569
            +S TRRTSS+R EE T V  VPR RKERWGTKTINSRTMM+ MMEVAQVERRNVAF NSSG A SAAS        RG N + G
Sbjct:   55 LSTTRRTSSYRYEETTRVGWVPRSRKERWGTKTINSRTMMVMMMEVAQVERRNVAFFNSSGRASSAASERASRQECRGGNAKTG 138
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1142.1255.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.430e-7
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:  167 FQSVLQCCSAKDLSSRRLFTIETMKAVAEAGLVPDLDMFVAAAEACSSAGDVAGALHF*DQADKL 361
            +++VL+  SA     + LFT++TM AV +AGLV D++M  AA +ACS A D  GA+HF DQA +L
Sbjct:  305 YKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRL 369
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1142.1255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNG9_9PHAE1.130e-4462.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8U1_ECTSI1.090e-2069.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLG9_ECTSI3.430e-749.23PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1142contigEcto-sp13_S_contig1142:14632..15516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size705
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462598.7207994-UTR-Ecto-sp13_S_contig1142:14631..149441681462598.7207994-UTR-Ecto-sp13_S_contig1142:14631..14944Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1142 14632..14944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462598.7291217-CDS-Ecto-sp13_S_contig1142:14944..151021681462598.7291217-CDS-Ecto-sp13_S_contig1142:14944..15102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1142 14945..15102 -
1681462598.7369444-CDS-Ecto-sp13_S_contig1142:15284..155161681462598.7369444-CDS-Ecto-sp13_S_contig1142:15284..15516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1142 15285..15516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1142.1255.1prot_Ecto-sp13_S_contig1142.1255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1142 14945..15516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1142.1255.1

>prot_Ecto-sp13_S_contig1142.1255.1 ID=prot_Ecto-sp13_S_contig1142.1255.1|Name=mRNA_Ecto-sp13_S_contig1142.1255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
NAKIGVNVLDCFLLPTHTSSAIIIVTISTFTSCRFLSRCCVILSVLLRAI
TCLSCFPERVTMLQRQRPLKPAALHHRDNEGCSRSRPCARPRHVRGGSGG
VLERRGRRGSVAFLGPGGQARIATRKQRT*
back to top

mRNA from alignment at Ecto-sp13_S_contig1142:14632..15516-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1142.1255.1 ID=mRNA_Ecto-sp13_S_contig1142.1255.1|Name=mRNA_Ecto-sp13_S_contig1142.1255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1142:14632..15516- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCCAAAATCGGTGTTAATGTGCTAGACTGTTTTCTACTGCCAACACA
TACATCATCAGCGATCATCATCGTGACTATCAGCACGTTCACGAGTTGCC
GGTTCCTTTCGCGCTGTTGCGTAATCCTATCAGTCCTTCTACGCGCCATA
ACCTGCCTGTCCTGCTTTCCAGAGCGTGTTACAATGCTGCAGCGCCAAAG
ACCTCTCAAGCCGGCGGCTCTTCACCATAGAGGTGAGTCATGCACTCGCG
GGGGCGAACTGATCTTTCCATTCGCTGCGTGGGATTCCGTTTCCTTTGAC
AGCATGCAGGATTCATCAGGTGGGGTATTTCAGCGCTTTCAAGAATGTTA
CTCTCGATACTTTAGCGTATGTTTACCGAGTTACCCTTGCCTGCGCGTGC
CGATGATGACGCAGACAATGAAGGCTGTAGCCGAAGCCGGCCTTGTGCCA
GACCTCGACATGTTCGTGGCGGCAGCGGAGGCGTGCTCGAGCGCCGGGGA
CGTCGCGGGAGCGTTGCATTTCTAGGACCAGGCGGACAAGCTCGCATCGC
AACGAGGAAGCAACGCACGTGAGCCGGGTCCCTCGCCGTCGCAAGGAGAG
GTGGGGGACGAAAACAATCAACAGCCGGACGATGATGATGACGATGATGG
AGGTGGCGCAGGTAGAGCGACGAAACGTCGCCTTTCTCAACAGCAGCGGT
ACAGCGTTGTCAGCCGCGAGCGTGCTTCGCGGCCAGAATATCGAAGTGGG
AACGCGAGGACCGGTCACGGACCTCCTCCCGCTCCCGTGCGTGCCATGGC
GAGACTCGAAACAACCGCGCGCCCCGCAGGGAAGGAGGTAGATGCCAAGG
GCGCCGAGATAGAGCAAGAAACGCTCTCGATTCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1142:14632..15516-

>mRNA_Ecto-sp13_S_contig1142.1255.1 ID=mRNA_Ecto-sp13_S_contig1142.1255.1|Name=mRNA_Ecto-sp13_S_contig1142.1255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1142:14632..15516- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCCAAAATCGGTGTTAATGTGCTAGACTGTTTTCTACTGCCAACACA
TACATCATCAGCGATCATCATCGTGACTATCAGCACGTTCACGAGTTGCC
GGTTCCTTTCGCGCTGTTGCGTAATCCTATCAGTCCTTCTACGCGCCATA
ACCTGCCTGTCCTGCTTTCCAGAGCGTGTTACAATGCTGCAGCGCCAAAG
ACCTCTCAAGCCGGCGGCTCTTCACCATAGAGACAATGAAGGCTGTAGCC
GAAGCCGGCCTTGTGCCAGACCTCGACATGTTCGTGGCGGCAGCGGAGGC
GTGCTCGAGCGCCGGGGACGTCGCGGGAGCGTTGCATTTCTAGGACCAGG
CGGACAAGCTCGCATCGCAACGAGGAAGCAACGCACGTGA
back to top