mRNA_Ecto-sp13_S_contig11414.1247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11414.1247.1
Unique NamemRNA_Ecto-sp13_S_contig11414.1247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A6H5JWE1_9PHAE (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWE1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 7.450e-77
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 1 
Query:   34 KVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEGTLFPAVSMYNRNDQLTFIPPEEHASPPPVPFPGSAAGDKNGGGPTRVGGGMDVPCTYSNVLYGTFSAECVVRRAAKALHVLETLNDQGKLA 438
            +VRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLE TLFPA SMYNRNDQLTFIP EEHASPPPVPFPGSAAGDKNGGGPTRVGGGMDVPCTYSNVLYGTFSAECVVRRAAKAL VLET++ QGKLA
Sbjct: 1341 QVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEDTLFPAFSMYNRNDQLTFIPSEEHASPPPVPFPGSAAGDKNGGGPTRVGGGMDVPCTYSNVLYGTFSAECVVRRAAKALQVLETMDYQGKLA 1475
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A7R9Y8S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8S2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.250e-29
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEGTLFPAVSMYNRNDQLTFIPPE 228
            LANKAIWHNKGKVRSYG+LF+EGD I   LN+DLG + F RNGR LG+AV+GL G +F A S+YN++D +T +PP+
Sbjct:   27 LANKAIWHNKGKVRSYGELFKEGDRISVHLNVDLGIMSFCRNGRHLGIAVEGLSGEIFAAFSLYNKDDCITIVPPD 102
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A7S1XME8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XME8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.740e-28
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEGTLFPAVSMYNRNDQLTFIPPEEHA 237
            LANKAIWHNKGKVRSYG+LF+EGD I   LN+DLG + F+RNGR LG+AV+GL G LFPA S+YN++D +T +PP+  A
Sbjct:  193 LANKAIWHNKGKVRSYGELFKEGDRISVHLNVDLGIMSFSRNGRHLGIAVEGLSGELFPAFSLYNKDDCVTIVPPDYDA 271
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A7S3NNH0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNH0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.850e-28
Identity = 51/80 (63.75%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEGTLFPAVSMYNRNDQLTFIPPEEHAS 240
            LANKAIWHNKGK R+YG+LF++GDT+   L+MD G L F+RNG+DLG+AV+GLEG+L+PA S+YN+ DQLT +PP+  +S
Sbjct:  350 LANKAIWHNKGKARAYGELFKQGDTVGVHLDMDAGNLWFSRNGKDLGIAVEGLEGSLYPAFSLYNKGDQLTLLPPDATSS 429
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A836CAJ1_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.260e-24
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEGTLFPAVSMYNRNDQLTFIP 222
            LAN+AIWH+K KVRSYGDLFREGD +   L+  L TLR+  NGRD+G+AVQGL G L+ A S+YN  DQLT  P
Sbjct:   80 LANRAIWHDKAKVRSYGDLFREGDVVGVHLDCTLRTLRYTVNGRDMGVAVQGLRGELYAAFSLYNFEDQLTVTP 153
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A482RZX3_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZX3_9ARCH)

HSP 1 Score: 103 bits (257), Expect = 6.920e-23
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLEGTLFPAVSMYNRNDQLT 213
            LANKA+WHNK K ++YG+LFR GDT+  IL++D+GTL F  N R LG+AV+GLEG L+PA S+YN +DQ+T
Sbjct:  903 LANKAVWHNKSKSKTYGELFRSGDTVTVILDLDMGTLSFCLNDRPLGVAVEGLEGPLYPAFSLYNEDDQIT 973
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A7S3PFU8_9STRA (Hypothetical protein n=3 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFU8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.420e-22
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGLE--GTLFPAVSMYNRNDQLTFIPPEEHAS 240
            LANKAIWHNKGK  +YG+LF+EGD I   L++++GTL F+ NG DLG+AV+GL   G LFPAVS+YN++D++T + P    S
Sbjct:  717 LANKAIWHNKGKSHTYGELFKEGDYIGVALDLNIGTLSFSHNGNDLGIAVEGLTEVGELFPAVSLYNKDDKVTLVMPRSGES 798
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A397EH29_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EH29_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.630e-22
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGL----EGTLFPAVSMYNRNDQLTFIPPEEHAS 240
            LANKA+WHNK K+++YGD+F++GD I   L++D GTL FARNG   G+ V  L    +G  FPA+SMYN++DQ+TF+P +E A+
Sbjct:    5 LANKAVWHNKSKLQTYGDMFKQGDVITVALDVDHGTLSFARNGESFGVGVDNLPSQDQGGYFPAISMYNKDDQVTFLPHDEAAT 88
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BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A418BPS1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BPS1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.140e-22
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGL----EGTLFPAVSMYNRNDQLTFIPPEEHAS 240
            LANKA+WHNK K+++YGD+F++GD I   L++D GTL FARNG   G+ V  L    +G  FPA+SMYN++DQ+TF+P +E A+
Sbjct:  120 LANKAVWHNKSKLQTYGDMFKQGDVITVALDVDHGTLSFARNGESFGVGVDNLPSQDQGGYFPAISMYNKDDQVTFLPHDEAAT 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Match: A0A6A5AXY3_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AXY3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.190e-22
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAVQGL----EGTLFPAVSMYNRNDQLTFIPPEEHAS 240
            LANKA+WHNK K+++YGD+F++GD I   L++D GTL FARNG   G+ V  L    +G  FPA+SMYN++DQ+TF+P +E A+
Sbjct:  180 LANKAVWHNKSKLQTYGDMFKQGDVITVALDVDHGTLSFARNGESFGVGVDNLPSQDQGGYFPAISMYNKDDQVTFLPHDEAAT 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11414.1247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWE1_9PHAE7.450e-7794.07B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
A0A7R9Y8S2_9STRA2.250e-2964.47Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1XME8_9STRA1.740e-2865.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3NNH0_9STRA3.850e-2863.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836CAJ1_9STRA3.260e-2463.51Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A482RZX3_9ARCH6.920e-2361.97B30.2/SPRY domain-containing protein n=1 Tax=archa... [more]
A0A7S3PFU8_9STRA2.420e-2257.32Hypothetical protein n=3 Tax=Aplanochytrium stocch... [more]
A0A397EH29_9STRA2.630e-2253.57B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A418BPS1_9STRA3.140e-2253.57Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A6A5AXY3_9STRA3.190e-2253.57HECT domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11414contigEcto-sp13_S_contig11414:2868..3632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score278.9
Seed ortholog evalue1.4e-72
Seed eggNOG ortholog2880.D7G597
Model size439
KEGG koko:K12169
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RNA localization to chromatin
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2242@1,KOG2242@2759
EC2.3.2.27
Cds size438
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462598.480949-CDS-Ecto-sp13_S_contig11414:2867..29031681462598.480949-CDS-Ecto-sp13_S_contig11414:2867..2903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11414 2868..2903 +
1681462598.491787-CDS-Ecto-sp13_S_contig11414:3016..31771681462598.491787-CDS-Ecto-sp13_S_contig11414:3016..3177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11414 3017..3177 +
1681462598.5032897-CDS-Ecto-sp13_S_contig11414:3391..36321681462598.5032897-CDS-Ecto-sp13_S_contig11414:3391..3632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11414 3392..3632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11414.1247.1prot_Ecto-sp13_S_contig11414.1247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11414 2868..3632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11414.1247.1

>prot_Ecto-sp13_S_contig11414.1247.1 ID=prot_Ecto-sp13_S_contig11414.1247.1|Name=mRNA_Ecto-sp13_S_contig11414.1247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
LANKAIWHNKGKVRSYGDLFREGDTIETILNMDLGTLRFARNGRDLGMAV
QGLEGTLFPAVSMYNRNDQLTFIPPEEHASPPPVPFPGSAAGDKNGGGPT
RVGGGMDVPCTYSNVLYGTFSAECVVRRAAKALHVLETLNDQGKLA
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mRNA from alignment at Ecto-sp13_S_contig11414:2868..3632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11414.1247.1 ID=mRNA_Ecto-sp13_S_contig11414.1247.1|Name=mRNA_Ecto-sp13_S_contig11414.1247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11414:2868..3632+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGCGAACAAAGCAATCTGGCACAACAAGGGCAAGGTGTGTTTGGTGTT
TGTTTCTTGACGCCTTTGGCAATGTTTGGACTTCGGCATGTGGAGTCGTT
TCATATCCAGACAAACTGAGCGTTTACATTGATAACGTCTTGTCGTCAGG
TTCGGTCGTATGGCGACCTCTTCCGGGAAGGAGATACTATCGAGACAATA
CTGAATATGGACTTGGGCACCCTCCGATTCGCCCGCAACGGCCGTGACCT
CGGTATGGCAGTGCAGGGTCTCGAGGGCACGTTGTTCCCGGCGGTTTCTA
TGTACAACAGGTGAACGGTCGATAATACTTTTTTTTTGTTGCCCTAGCAA
ACGAAAAAGTCCTTGCGCGAGAACATGACGACACTAATGACAGTGCGCGC
AACGTCGAGAACCAGTAGTTACAGAGGCCAGTAAATATGCAACAGGGGAA
GGCATAATGTCCATCCCGGCGCAAAACGACCTAGAAAGGACGCCCTCACG
CTTGTTCCTCCTTTCCGACAACAGGAACGACCAACTCACCTTCATACCTC
CAGAAGAACACGCCTCACCACCTCCTGTCCCTTTTCCTGGGAGTGCTGCC
GGCGACAAGAACGGAGGAGGCCCAACCCGCGTTGGGGGCGGAATGGACGT
TCCATGCACCTATTCGAATGTGCTATATGGAACGTTTTCGGCGGAGTGCG
TTGTCCGGAGAGCGGCAAAGGCCCTTCACGTTCTCGAAACCCTGAACGAC
CAAGGAAAATTAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11414:2868..3632+

>mRNA_Ecto-sp13_S_contig11414.1247.1 ID=mRNA_Ecto-sp13_S_contig11414.1247.1|Name=mRNA_Ecto-sp13_S_contig11414.1247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11414:2868..3632+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGCGAACAAAGCAATCTGGCACAACAAGGGCAAGGTTCGGTCGTATGG
CGACCTCTTCCGGGAAGGAGATACTATCGAGACAATACTGAATATGGACT
TGGGCACCCTCCGATTCGCCCGCAACGGCCGTGACCTCGGTATGGCAGTG
CAGGGTCTCGAGGGCACGTTGTTCCCGGCGGTTTCTATGTACAACAGGAA
CGACCAACTCACCTTCATACCTCCAGAAGAACACGCCTCACCACCTCCTG
TCCCTTTTCCTGGGAGTGCTGCCGGCGACAAGAACGGAGGAGGCCCAACC
CGCGTTGGGGGCGGAATGGACGTTCCATGCACCTATTCGAATGTGCTATA
TGGAACGTTTTCGGCGGAGTGCGTTGTCCGGAGAGCGGCAAAGGCCCTTC
ACGTTCTCGAAACCCTGAACGACCAAGGAAAATTAGCG
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