mRNA_Ecto-sp13_S_contig11411.1243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11411.1243.1
Unique NamemRNA_Ecto-sp13_S_contig11411.1243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11411.1243.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 8.270e-46
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 WTGATGEERAEYAATAEDVLGPFVDASGKGGDLPYARREIAEAHMAVSVADWAEGNPNSAKREAELALRVLLEGKLGYVDKDEALRRKGR 270
            WTGATGEERAEYAATAE VL PFVDASGKGGDL YARREIAEAHMAVSVADWAEGNP SAKREAELALR LLEGKLGYVDKDEALRR+GR
Sbjct: 1181 WTGATGEERAEYAATAEYVLAPFVDASGKGGDLSYARREIAEAHMAVSVADWAEGNPISAKREAELALRALLEGKLGYVDKDEALRREGR 1270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11411.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS90_ECTSI8.270e-4693.33eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11411contigEcto-sp13_S_contig11411:2506..3230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score167.5
Seed ortholog evalue2.8e-39
Seed eggNOG ortholog2880.D8LS90
Model size272
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
Cds size270
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462598.285097-CDS-Ecto-sp13_S_contig11411:2506..26631681462598.285097-CDS-Ecto-sp13_S_contig11411:2506..2663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11411 2507..2663 -
1681462598.2951827-CDS-Ecto-sp13_S_contig11411:3117..32301681462598.2951827-CDS-Ecto-sp13_S_contig11411:3117..3230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11411 3118..3230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11411.1243.1prot_Ecto-sp13_S_contig11411.1243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11411 2507..3230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11411.1243.1

>prot_Ecto-sp13_S_contig11411.1243.1 ID=prot_Ecto-sp13_S_contig11411.1243.1|Name=mRNA_Ecto-sp13_S_contig11411.1243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
WTGATGEERAEYAATAEDVLGPFVDASGKGGDLPYARREIAEAHMAVSVA
DWAEGNPNSAKREAELALRVLLEGKLGYVDKDEALRRKGR
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mRNA from alignment at Ecto-sp13_S_contig11411:2506..3230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11411.1243.1 ID=mRNA_Ecto-sp13_S_contig11411.1243.1|Name=mRNA_Ecto-sp13_S_contig11411.1243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=725bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11411:2506..3230- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACGGGGGCGACGGGGGAGGAGAGGGCGGAGTACGCGGCGACGGCGGA
GGACGTGCTGGGTCCGTTCGTGGACGCCTCTGGGAAGGGGGGCGACTTGC
CTTACGCGCGAAGGTTTGTTTTGTGGGTTGTGTGTGTGTTTGTGTTTTGG
AGGGGGGGATTGGCGTCGTAGCTGGCTGGTTAATGACAAGCCTTCAGTGG
TGTGTTTTGTTATATTAGAATCAAGCTAACCAGCGTTCCATTAACAAGAC
TCACTTTCATCCCAACGATACGTACGCCAGCACCTCAGTGAGAGTTCTTC
CGCGTTCATGAAAGGACGGTGGTGGACCGCTTCCTTCCTCCTTCCTGCTC
ACTGCAAGAATGGCGTGGCTACGTCGACGCCAAACCAATTCCGATCTTCT
CCTAATCCCATGGAAGAAGACCCCGGGGTGTCGATGAAGTACCCCCCCCC
CCTCTTGGACCCAAACCCCCTCCTCCCCCTCCCCTCCCTCTACACCGACC
TGGAACCCCCGCTCTTCCTCCACCATCGCCTCGCGCACGCACGCACGTAC
GCTCCCCGAAAAAACAGAGAGATTGCGGAGGCTCACATGGCGGTATCGGT
CGCCGACTGGGCGGAGGGCAACCCTAACTCCGCAAAGAGGGAGGCGGAGC
TGGCCCTTCGCGTGCTGCTCGAGGGGAAGCTGGGGTACGTGGACAAGGAC
GAGGCTCTACGGCGGAAAGGGCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11411:2506..3230-

>mRNA_Ecto-sp13_S_contig11411.1243.1 ID=mRNA_Ecto-sp13_S_contig11411.1243.1|Name=mRNA_Ecto-sp13_S_contig11411.1243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11411:2506..3230- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACGGGGGCGACGGGGGAGGAGAGGGCGGAGTACGCGGCGACGGCGGA
GGACGTGCTGGGTCCGTTCGTGGACGCCTCTGGGAAGGGGGGCGACTTGC
CTTACGCGCGAAGAGAGATTGCGGAGGCTCACATGGCGGTATCGGTCGCC
GACTGGGCGGAGGGCAACCCTAACTCCGCAAAGAGGGAGGCGGAGCTGGC
CCTTCGCGTGCTGCTCGAGGGGAAGCTGGGGTACGTGGACAAGGACGAGG
CTCTACGGCGGAAAGGGCGT
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