mRNA_Ecto-sp13_S_contig114.1225.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig114.1225.1
Unique NamemRNA_Ecto-sp13_S_contig114.1225.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: D7FJK6_ECTSI (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK6_ECTSI)

HSP 1 Score: 472 bits (1214), Expect = 1.050e-160
Identity = 238/257 (92.61%), Postives = 242/257 (94.16%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSCTDGAGFKV 798
            SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENP GTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQR+WADNQ S        CTITFDPETEG  LA+ALDYFQYQLKGVSFLPR DYGAFPQMPYEAISEDEYKSQISKLR L+FSRRRGQTRGEGDG RVEEVPDRYCESDSCTDGAGF+V
Sbjct:  466 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPEGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRYWADNQVS--------CTITFDPETEGHHLAHALDYFQYQLKGVSFLPRMDYGAFPQMPYEAISEDEYKSQISKLRHLNFSRRRGQTRGEGDGVRVEEVPDRYCESDSCTDGAGFRV 714          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A6H5KM58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM58_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 2.020e-119
Identity = 184/220 (83.64%), Postives = 189/220 (85.91%), Query Frame = 1
Query:  220 GMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALT---------------------------CTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSCTDGAGFKV 798
            GMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENP GTMVVEVPVDAGE VRTAQDLSMWEQLSFAAFLQR+WADNQASFLCFGALT                           CTITFDP+TEGK LA+ALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSCT+ AGF+V
Sbjct:  411 GMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPEGTMVVEVPVDAGEAVRTAQDLSMWEQLSFAAFLQRYWADNQASFLCFGALTLRTWIFTSHASTLCIQRYTPFVFVQVSCTITFDPDTEGKHLAHALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSCTNRAGFRV 630          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A835YMD1_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD1_9STRA)

HSP 1 Score: 325 bits (832), Expect = 2.700e-103
Identity = 162/249 (65.06%), Postives = 199/249 (79.92%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSC 774
            SMSGLAQFVAARGLG L+ WCE GY AV   D  LST+FG+  SIKTTSIKPSGTVSLLAGATPGMHYPE+RFY+RRVR+A+++++L PLR AG  +EP A NP GT+VVE+PVDAGEGVRT+++L++WEQLSFAAFLQR+WADNQ S        CT+TFDPETE  QL +ALDYFQYQLKGVSFLPR   GA+PQMPYEAIS  +Y  ++  + P++F+  RG  R +   A  +EVPD++C++D+C
Sbjct:  445 SMSGLAQFVAARGLGALRAWCEHGYAAVQAADSALSTRFGVHRSIKTTSIKPSGTVSLLAGATPGMHYPEARFYVRRVRVAAESELLAPLRAAGLPVEPCAMNP-GTVVVEIPVDAGEGVRTSRELTLWEQLSFAAFLQRYWADNQVS--------CTVTFDPETEAAQLPHALDYFQYQLKGVSFLPRIAAGAYPQMPYEAISAAQYAERMRSVSPVNFAALRG--RRQRRAADADEVPDKFCDTDAC 682          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A835ZHW0_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW0_9STRA)

HSP 1 Score: 307 bits (786), Expect = 4.450e-96
Identity = 155/248 (62.50%), Postives = 186/248 (75.00%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDS 771
            SMSGLAQF AARGL TL+ WC+ GY  +   D  LS++ G+P SIKTTSIKPSGTVSLLAGATPGMHYPE+RFY+RRVR+A+D  +L  LR AG R+EP A +P  T VVE  VDAGEGVRTA++L +WEQLSFAAFLQR WADNQ S        CT+TFDPETE  QL +ALDYFQYQLKGVSFLPR   GA+PQMPYEAI+  +Y  ++S + P++F+       G      V+EVPD++C+SDS
Sbjct:  461 SMSGLAQFAAARGLPTLRAWCDRGYATIQTTDAALSSRLGVPRSIKTTSIKPSGTVSLLAGATPGMHYPEARFYVRRVRVAADCALLPALRAAGLRVEPCALSPATTAVVEFAVDAGEGVRTARELPLWEQLSFAAFLQRHWADNQVS--------CTVTFDPETEAAQLPHALDYFQYQLKGVSFLPRIAAGAYPQMPYEAITAQQYAERMSAVTPVNFNFNCAARAGRRGADDVDEVPDKFCDSDS 700          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A329SPL4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SPL4_9STRA)

HSP 1 Score: 286 bits (731), Expect = 4.950e-94
Identity = 143/246 (58.13%), Postives = 174/246 (70.73%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCES 765
            SMSG+AQF++ RGL   Q WCE GY+ V  +D+ LS +F IP SIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRR+R+ + +D+L  L+ A Y +EPA E+P  T+VV +PVD GEGVRT  D+S WEQ + AAFLQR WADNQ S        CT+TFDP+TEG QLAN LDYFQYQLKG+S LP+ + GA+ QMPYE IS   Y      + PL F+  +           V +VPD+YCE+
Sbjct:   10 SMSGIAQFISNRGLNDFQRWCEAGYDRVQEVDKQLSARFAIPRSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRMRLDNHSDLLPALQRAEYAIEPAHESPNTTLVVSIPVDVGEGVRTLSDVSAWEQFALAAFLQRHWADNQVS--------CTVTFDPKTEGPQLANMLDYFQYQLKGISLLPKLELGAYKQMPYEEISARTYHKMNQSIEPLQFNVIQSIE-------TVIDVPDKYCEA 240          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A2E0BTC6_9FLAO (Fused protease/ribonucleoside-triphosphate reductase (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E0BTC6_9FLAO)

HSP 1 Score: 280 bits (717), Expect = 7.040e-91
Identity = 140/249 (56.22%), Postives = 181/249 (72.69%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSC 774
            S+SG+AQF+  RGL  L+EW  +GY+ +   D+  S  F IP SIKTTS+KPSGTVSLLAG+TPG+HYPESRFYIRR+R++ +++++ PL++AGY++EPA  +   T+VVE+PVD GEG+RTA DLS+WEQ S AAFLQR WADNQ S        CT+TF+PETE +++ N L+YFQY LKG+S LPR DYGA+ QMPYEAI E EY  QISKL  L F    G  + E   A +E    ++C+ D C
Sbjct:   69 SVSGVAQFITHRGLDELKEWLNDGYDVIQDWDDVYSDWFAIPKSIKTTSVKPSGTVSLLAGSTPGLHYPESRFYIRRIRLSINSELVEPLKKAGYKIEPAFGSEDSTLVVEIPVDVGEGIRTAGDLSIWEQFSLAAFLQRHWADNQVS--------CTVTFNPETESEEIPNVLNYFQYHLKGISLLPRHDYGAYKQMPYEAIDEKEYNKQISKLGKLSF----GVIKSEE--ANIE----KFCDGDFC 299          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A8K1CJE6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJE6_PYTOL)

HSP 1 Score: 299 bits (766), Expect = 1.810e-90
Identity = 150/246 (60.98%), Postives = 182/246 (73.98%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCES 765
            SMSG+AQF+   G+  L++WCE GY+AV   DE  S +F IP SIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRR+R+   ++++  LR+AGY LEPA E+P  T+VV +PVD GEG+RT QD+S WEQLS AAFLQR WADNQ S        CT+TFDPE EG+QLA ALDYFQYQLKGVS LPR   GA+ QMPYE+I E  Y  ++S+L+PL F      T    D   V++VPD++CE+
Sbjct:  906 SMSGIAQFITHNGIDELRQWCESGYDAVHEYDEVFSERFAIPRSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRMRLDKASELVSALRDAGYDLEPAVESPEMTLVVSIPVDVGEGIRTIQDISAWEQLSLAAFLQRHWADNQVS--------CTVTFDPEREGEQLAPALDYFQYQLKGVSLLPRLAMGAYAQMPYESIDEATYHEKLSRLKPLRFD-----TSLHVDANAVQDVPDQFCEA 1138          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A2E7W6S1_9EURY (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7W6S1_9EURY)

HSP 1 Score: 290 bits (741), Expect = 4.490e-90
Identity = 143/249 (57.43%), Postives = 183/249 (73.49%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSC 774
            SMSG+AQFVA RG+G L+ W + GY  + ++DE  S  F IP SIKTTSIKPSGTVSLLAGATPG+H+PESR+YIRR+R+  D++++ PL +AGY++EPA  +   TMVVE+PVD GEGVRT  D+SMWEQLS AA  QR+WADNQ S        CT+TF+PETEG Q+ANALD +QYQLKG+SFLP+ D+GA+PQMPYE+I  + Y +  S L  L F R +G+          E V +R+C++D C
Sbjct:  426 SMSGIAQFVANRGVGELRSWMDIGYGHIQKLDEKYSNWFAIPKSIKTTSIKPSGTVSLLAGATPGIHFPESRYYIRRMRLGKDSNLVAPLEKAGYKIEPAFGSEETTMVVEIPVDLGEGVRTLDDVSMWEQLSMAALAQRYWADNQVS--------CTVTFNPETEGSQIANALDIYQYQLKGISFLPKLDFGAYPQMPYESIDSETYHNLKSGLGKLSFGRIKGE----------EVVVERFCDNDVC 656          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: A0A661VGD2_9CHLR (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661VGD2_9CHLR)

HSP 1 Score: 290 bits (741), Expect = 4.490e-90
Identity = 142/249 (57.03%), Postives = 182/249 (73.09%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSC 774
            SMSG+AQF+A RG+G L++W +EGYE +  +D++ S    IP SIKTTSIKPSGTVSLLAGATPG+H+PESR+YIRR+R+  D++++ PL +AGY++EPA  +   T+VVE+PVD G GVRT   +SMWEQLS AA  QR+WADNQ S        CT+TFDPE EG Q+A ALD +QYQLKG+SFLPR DYGA+PQMPYEAI ++ Y +  S L  L F R +G+          E V +R+C+SD C
Sbjct:  431 SMSGIAQFIANRGIGKLRQWMDEGYEHIQDLDKEYSDWMAIPRSIKTTSIKPSGTVSLLAGATPGIHFPESRYYIRRMRLGKDSNLVAPLEKAGYKIEPAFGSEDTTLVVEIPVDVGAGVRTVDKVSMWEQLSIAALAQRYWADNQVS--------CTVTFDPEEEGPQIAAALDIYQYQLKGISFLPRLDYGAYPQMPYEAIDKESYDNMKSALGKLSFGRIKGE----------EVVVERFCDSDVC 661          
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Match: W4GZS7_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZS7_9STRA)

HSP 1 Score: 291 bits (746), Expect = 5.660e-90
Identity = 153/249 (61.45%), Postives = 177/249 (71.08%), Query Frame = 1
Query:   28 SMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGIPTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLREAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRFWADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTDYGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPDRYCESDSC 774
            SMSG+AQF+  RGL  L++WC +GY+A+   D+  S    IP SIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVR+   +++L  LR AGY LEPAAE P  T+VV +PVD GE VRT   LS WEQLS A+FLQR+WADNQ S        CTITFDP  EG QL +AL YFQYQLKGVS LP+   GA+ QMPYE ISE  YKS +S L P+ F  R  +TRG        EVPDR+C+S SC
Sbjct:  544 SMSGIAQFITQRGLHELKDWCMQGYDAIQAYDKTYSDFLAIPRSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRLDRGSELLPALRAAGYHLEPAAEAPNETLVVSIPVDVGENVRTLSQLSAWEQLSLASFLQRYWADNQVS--------CTITFDPVLEGPQLEHALAYFQYQLKGVSLLPKVPLGAYAQMPYEEISEATYKSMVSALSPVSF--REIKTRG-----GPVEVPDRFCDSSSC 777          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig114.1225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK6_ECTSI1.050e-16092.61Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A6H5KM58_9PHAE2.020e-11983.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMD1_9STRA2.700e-10365.06Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A835ZHW0_9STRA4.450e-9662.50Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A329SPL4_9STRA4.950e-9458.13Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2E0BTC6_9FLAO7.040e-9156.22Fused protease/ribonucleoside-triphosphate reducta... [more]
A0A8K1CJE6_PYTOL1.810e-9060.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2E7W6S1_9EURY4.490e-9057.43Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A661VGD2_9CHLR4.490e-9057.03Ribonucleoside-triphosphate reductase (thioredoxin... [more]
W4GZS7_9STRA5.660e-9061.45Ribonucleoside-triphosphate reductase (thioredoxin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig114contigEcto-sp13_S_contig114:36669..38735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score476.9
Seed ortholog evalue6.3e-132
Seed eggNOG ortholog2880.D7FJK6
Model size801
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004748,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009141,GO:0009142,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Exons6
EggNOG free text desc.reductase
EggNOG OGs2QRRC@2759,COG1372@1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_006460.1
Cds size801
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig114.1225.1prot_Ecto-sp13_S_contig114.1225.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig114 36669..38735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.113775-CDS-Ecto-sp13_S_contig114:36668..368511681462597.113775-CDS-Ecto-sp13_S_contig114:36668..36851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 36669..36851 -
1681462597.124087-CDS-Ecto-sp13_S_contig114:37065..371891681462597.124087-CDS-Ecto-sp13_S_contig114:37065..37189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 37066..37189 -
1681462597.1331248-CDS-Ecto-sp13_S_contig114:37316..374961681462597.1331248-CDS-Ecto-sp13_S_contig114:37316..37496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 37317..37496 -
1681462597.142028-CDS-Ecto-sp13_S_contig114:37642..377361681462597.142028-CDS-Ecto-sp13_S_contig114:37642..37736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 37643..37736 -
1681462597.1524858-CDS-Ecto-sp13_S_contig114:38118..382021681462597.1524858-CDS-Ecto-sp13_S_contig114:38118..38202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 38119..38202 -
1681462597.1614316-CDS-Ecto-sp13_S_contig114:38599..387351681462597.1614316-CDS-Ecto-sp13_S_contig114:38599..38735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 38600..38735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig114.1225.1

>prot_Ecto-sp13_S_contig114.1225.1 ID=prot_Ecto-sp13_S_contig114.1225.1|Name=mRNA_Ecto-sp13_S_contig114.1225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MSRPFFRLKSMSGLAQFVAARGLGTLQEWCEEGYEAVSRIDEDLSTQFGI
PTSIKTTSIKPSGTVSLLAGATPGMHYPESRFYIRRVRMASDADVLGPLR
EAGYRLEPAAENPGGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRF
WADNQASFLCFGALTCTITFDPETEGKQLANALDYFQYQLKGVSFLPRTD
YGAFPQMPYEAISEDEYKSQISKLRPLDFSRRRGQTRGEGDGARVEEVPD
RYCESDSCTDGAGFKV*
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mRNA from alignment at Ecto-sp13_S_contig114:36669..38735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig114.1225.1 ID=mRNA_Ecto-sp13_S_contig114.1225.1|Name=mRNA_Ecto-sp13_S_contig114.1225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2067bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:36669..38735- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGCCCTTTTTTCCGTCTTAAAAGCATGAGCGGGCTGGCTCAGTT TGTCGCGGCGAGGGGTCTGGGGACTTTGCAAGAGTGGTGCGAAGAGGGAT ACGAGGCTGTCTCCCGAATAGACGAGGATCTTTCAAGTGAGGCCTTACAG AACCGGTGGTGTAGATATCGCGCCGCGCAGTTTGATTCATATTTTCAGGT ACCACACAGGATTTGCGCGAGACCGCATTGCCTTAGAGTTCCCCCCACTC GTGGGCCATACCTGGGATCTGCGTCTGTTTGTTTACGTTCACGATGGTGC CAAACATCGAACTCGGTACACATACAGTAAATCGGGGCTGTGCGAAGTTC GAATTTACCCCCGATTGTGGCCCTTCGCTTTGGCATGACTGTGCGCTTGT AAATATTTTTTCTGACGTCCCCTTGTCTGCCCAGAGCTCATTTATGTTTT GCCAGTACATGTCTAGGACCGGTTCGTCACTGAGGCACACTTGGCTCGAC TGCGACCTCGTGTTTTGACTTCAATCGTACCAGCTCAATTTGGCATCCCA ACATCGATCAAGACCACAAGCATCAAGCCGAGTGGGACGGTGTCTCTTCT CGCTGGGGCGACCCCAGGTAGGTAGGGAGCGAGGTTGGGCGCAGGGTAGC TTAGAGCGGTAGACTAAACAGCGACATCCCTGCTTCAAGTGTGTACAAAC TCGGAGTACGAATCAAAGTTGGAGTGTCGCGCAGTTGTCGTCAATACTGT CGAACCGGGAGTACCTCGCGCGGTGGTGTCAAGCGGCGGCGCTTGTCTCG TTCGGTTCGGGCCGAAAAGACTGCCTGCTGCGTAAAGGGTTCAAATCTGA GACACCATTGGGTAGATTTGAAGGGTAATCTCGTTTTCGATGCTTTCTAT GCTTCGTGTCCGGATGCCAACGTGCTTATCGCTCAGCCGATGGGTGCTCG TGCTCGTGCTCGTGCTCGTATTGACGTGTCTTGGTGCCGTTCTATGTAGG CATGCACTACCCGGAGTCCAGGTTCTACATTAGGCGCGTGCGAATGGCTT CGGATGCGGATGTGCTGGGGCCATTACGAGAAGCTGGTTACAGGTACGCC GAGTGTTTGCGATTATCTCCGATAGATGTGGGCCCAAGCCCGCCCCGACT GCTTTTCACGCAGCAACCGAAGATGGCCTGCTCTGTCGCTTTGCATGATG TTTCGTTTGATCTGACCTGCTTAACCCCCTACCTCTCAGGCTAGAGCCTG CAGCTGAAAACCCTGGAGGCACTATGGTCGTGGAAGTCCCTGTGGACGCT GGGGAAGGTGTGCGCACCGCACAAGACCTAAGCATGTGGGAGCAGCTCAG CTTCGCTGCCTTCCTCCAACGGTTTTGGGCCGACAATCAGGCAAGCTTTC TTTGTTTCGGTGCCCTTACGTTGCGTATGTTTTTCTGGACCTCGACGAGA TGTACTCATGCGTGCACCAGGCAGCTGGGTATTCACGTCGCACGCTTCAA CCCTGTGTATTCAGCGGTATACCCCTTTTGTTTTCGTCCAGGTGAGCTGC ACGATTACCTTCGATCCTGAGACAGAAGGCAAGCAGCTGGCTAACGCGTT GGACTATTTTCAGTATCAGCTGAAAGGCGTGTCCTTTCTTCCCAGGACGG ACTACGGCGCTTTCCCACAGGTCAGTCTGCGGCTCGCATCTGTGTTGAAA CGTAGCCGACCAAGCTCCCAGAGTCGGGTACACTGGCAAGTAATATTGAT GCATTTTGAGAAGTTTTTGGCCTTGTGTAGTTTGCGCAAAGTGCAGACCC GTCTTGACTGCTCGGCCCCGACCGGCATTTCCCCTGGCCGTATGTTCGAT ATCGTCGCTTTCTTGGTTGCGAACGTTTTTGCAGATGCCGTATGAGGCGA TTTCCGAGGACGAGTACAAGAGCCAGATCTCCAAGCTTCGACCATTAGAT TTTTCGCGGCGACGTGGGCAAACTCGAGGAGAGGGCGATGGTGCACGCGT GGAGGAAGTCCCGGACAGATATTGCGAATCAGACTCTTGTACAGACGGGG CCGGTTTCAAAGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig114:36669..38735-

>mRNA_Ecto-sp13_S_contig114.1225.1 ID=mRNA_Ecto-sp13_S_contig114.1225.1|Name=mRNA_Ecto-sp13_S_contig114.1225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:36669..38735- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGCCCTTTTTTCCGTCTTAAAAGCATGAGCGGGCTGGCTCAGTT
TGTCGCGGCGAGGGGTCTGGGGACTTTGCAAGAGTGGTGCGAAGAGGGAT
ACGAGGCTGTCTCCCGAATAGACGAGGATCTTTCAACTCAATTTGGCATC
CCAACATCGATCAAGACCACAAGCATCAAGCCGAGTGGGACGGTGTCTCT
TCTCGCTGGGGCGACCCCAGGCATGCACTACCCGGAGTCCAGGTTCTACA
TTAGGCGCGTGCGAATGGCTTCGGATGCGGATGTGCTGGGGCCATTACGA
GAAGCTGGTTACAGGCTAGAGCCTGCAGCTGAAAACCCTGGAGGCACTAT
GGTCGTGGAAGTCCCTGTGGACGCTGGGGAAGGTGTGCGCACCGCACAAG
ACCTAAGCATGTGGGAGCAGCTCAGCTTCGCTGCCTTCCTCCAACGGTTT
TGGGCCGACAATCAGGCAAGCTTTCTTTGTTTCGGTGCCCTTACCTGCAC
GATTACCTTCGATCCTGAGACAGAAGGCAAGCAGCTGGCTAACGCGTTGG
ACTATTTTCAGTATCAGCTGAAAGGCGTGTCCTTTCTTCCCAGGACGGAC
TACGGCGCTTTCCCACAGATGCCGTATGAGGCGATTTCCGAGGACGAGTA
CAAGAGCCAGATCTCCAAGCTTCGACCATTAGATTTTTCGCGGCGACGTG
GGCAAACTCGAGGAGAGGGCGATGGTGCACGCGTGGAGGAAGTCCCGGAC
AGATATTGCGAATCAGACTCTTGTACAGACGGGGCCGGTTTCAAAGTTTG
A
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