mRNA_Ecto-sp13_S_contig11389.1215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11389.1215.1
Unique NamemRNA_Ecto-sp13_S_contig11389.1215.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11389.1215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11389contigEcto-sp13_S_contig11389:1641..2374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size734
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462595.9981472-UTR-Ecto-sp13_S_contig11389:1640..17561681462595.9981472-UTR-Ecto-sp13_S_contig11389:1640..1756Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11389 1641..1756 +
1681462596.026303-UTR-Ecto-sp13_S_contig11389:2266..23741681462596.026303-UTR-Ecto-sp13_S_contig11389:2266..2374Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11389 2267..2374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.0171897-CDS-Ecto-sp13_S_contig11389:1756..22661681462596.0171897-CDS-Ecto-sp13_S_contig11389:1756..2266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11389 1757..2266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11389.1215.1prot_Ecto-sp13_S_contig11389.1215.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11389 1757..2266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11389.1215.1

>prot_Ecto-sp13_S_contig11389.1215.1 ID=prot_Ecto-sp13_S_contig11389.1215.1|Name=mRNA_Ecto-sp13_S_contig11389.1215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MVASKQGRMTGGCVQFLGPNCPTSFPCWSAVVGALHAVIVYWYKLYAGRG
CWNVAMAARYAQSTLGPRRAATASSCSIVVGLSRTAALLCCTTGSCCTQL
LLHTNMWEVCSTHSLCRCIARKTENISKCALAQIEHHAGGKFSFPVGQTS
WCVCVMWKSRERGDGATFI*
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mRNA from alignment at Ecto-sp13_S_contig11389:1641..2374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11389.1215.1 ID=mRNA_Ecto-sp13_S_contig11389.1215.1|Name=mRNA_Ecto-sp13_S_contig11389.1215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11389:1641..2374+ (Ectocarpus species13 EcNAP12_S_4_19m)
AATGTGCGGGCGGTCTACGAAGACATGTCTGCAGGGATATTGGTGCGTTA
GTTCCTTGCTTTACTGTAGACTGCTGTAGCTAGAGCAGCTGTGTTCTTGC
AGCAGCTGTGCATACCATGGTTGCATCTAAACAAGGTCGTATGACGGGCG
GGTGTGTGCAATTCCTCGGCCCGAACTGTCCAACTTCCTTTCCTTGCTGG
TCCGCGGTCGTTGGGGCTTTGCACGCCGTCATCGTCTATTGGTATAAACT
GTACGCGGGGCGCGGGTGCTGGAATGTCGCAATGGCTGCGCGATACGCAC
AGTCTACTCTGGGTCCACGAAGAGCAGCAACGGCTTCAAGTTGCAGTATC
GTTGTTGGCTTGTCGCGAACGGCCGCACTGCTTTGCTGCACGACAGGGTC
TTGCTGCACTCAACTTTTGCTACATACAAACATGTGGGAGGTGTGCAGCA
CCCACTCCCTCTGTAGATGCATTGCGCGCAAGACAGAAAACATCAGCAAG
TGTGCTCTAGCACAGATCGAACACCATGCGGGAGGAAAGTTCTCATTTCC
TGTCGGGCAAACATCGTGGTGTGTGTGTGTGATGTGGAAATCCCGAGAGA
GAGGAGACGGCGCAACCTTCATTTAGGAGAAATAATTACACGCACAGAGT
GACTACCCATTCGAGATATACCCACAGCAGTCGAACGGGATGTGGTGGAG
TCTTTTCAGCAACCTTCATGTAAAAACAGTATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11389:1641..2374+

>mRNA_Ecto-sp13_S_contig11389.1215.1 ID=mRNA_Ecto-sp13_S_contig11389.1215.1|Name=mRNA_Ecto-sp13_S_contig11389.1215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11389:1641..2374+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCATCTAAACAAGGTCGTATGACGGGCGGGTGTGTGCAATTCCT
CGGCCCGAACTGTCCAACTTCCTTTCCTTGCTGGTCCGCGGTCGTTGGGG
CTTTGCACGCCGTCATCGTCTATTGGTATAAACTGTACGCGGGGCGCGGG
TGCTGGAATGTCGCAATGGCTGCGCGATACGCACAGTCTACTCTGGGTCC
ACGAAGAGCAGCAACGGCTTCAAGTTGCAGTATCGTTGTTGGCTTGTCGC
GAACGGCCGCACTGCTTTGCTGCACGACAGGGTCTTGCTGCACTCAACTT
TTGCTACATACAAACATGTGGGAGGTGTGCAGCACCCACTCCCTCTGTAG
ATGCATTGCGCGCAAGACAGAAAACATCAGCAAGTGTGCTCTAGCACAGA
TCGAACACCATGCGGGAGGAAAGTTCTCATTTCCTGTCGGGCAAACATCG
TGGTGTGTGTGTGTGATGTGGAAATCCCGAGAGAGAGGAGACGGCGCAAC
CTTCATTTAG
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