mRNA_Ecto-sp13_S_contig11380.1211.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11380.1211.1
Unique NamemRNA_Ecto-sp13_S_contig11380.1211.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11380.1211.1 vs. uniprot
Match: D8LEB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB4_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.460e-62
Identity = 105/114 (92.11%), Postives = 106/114 (92.98%), Query Frame = 1 
Query:    1 GLTFPTMERGGAAVSMAPLSSERMPFGSSGSGELFAVGFGGGTVAVFDARCHEAGGMVGGFISRHRWLKRLRSAGSLLMASYGRTKNIETWDMRRLPSRPTHEPPPGLPLPRLR 342
            GLTFPTMERGGAAVSMAPLSSE MPFGSSGSGELFAVGF GGTVAVFDARCHE GGMVGGF +RHRWLKRLRSAG LLM SYGRTKNIETWDMRRLPSR THEPPPGLP PRLR
Sbjct:  352 GLTFPTMERGGAAVSMAPLSSEGMPFGSSGSGELFAVGFAGGTVAVFDARCHEGGGMVGGFTTRHRWLKRLRSAGPLLMNSYGRTKNIETWDMRRLPSRATHEPPPGLPSPRLR 465
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11380.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEB4_ECTSI2.460e-6292.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11380contigEcto-sp13_S_contig11380:4539..5440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size342
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462595.826574-UTR-Ecto-sp13_S_contig11380:4538..45561681462595.826574-UTR-Ecto-sp13_S_contig11380:4538..4556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11380 4539..4556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462595.8385656-CDS-Ecto-sp13_S_contig11380:4556..47891681462595.8385656-CDS-Ecto-sp13_S_contig11380:4556..4789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11380 4557..4789 +
1681462595.848375-CDS-Ecto-sp13_S_contig11380:5349..54401681462595.848375-CDS-Ecto-sp13_S_contig11380:5349..5440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11380 5350..5440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11380.1211.1prot_Ecto-sp13_S_contig11380.1211.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11380 4557..5440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11380.1211.1

>prot_Ecto-sp13_S_contig11380.1211.1 ID=prot_Ecto-sp13_S_contig11380.1211.1|Name=mRNA_Ecto-sp13_S_contig11380.1211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MERGGAAVSMAPLSSERMPFGSSGSGELFAVGFGGGTVAVFDARCHEAGG
MVGGFISRHRWLKRLRSAGSLLMASYGRTKNIETWDMRRLPSRPTHEPPP
GLPLPRLR
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mRNA from alignment at Ecto-sp13_S_contig11380:4539..5440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11380.1211.1 ID=mRNA_Ecto-sp13_S_contig11380.1211.1|Name=mRNA_Ecto-sp13_S_contig11380.1211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11380:4539..5440+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATTAACATTCCCGACCATGGAGCGCGGGGGAGCGGCGGTAAGCATGGC
CCCACTCTCCTCCGAACGGATGCCTTTCGGCTCCAGTGGCAGCGGTGAAC
TCTTCGCCGTCGGGTTCGGCGGGGGCACCGTCGCTGTTTTTGACGCCCGG
TGCCACGAGGCCGGCGGGATGGTGGGTGGGTTCATTTCGAGGCATCGGTG
GCTGAAGCGGCTTCGAAGTGCCGGGTCATTGCTCATGGCCTCCTACGGCA
GGTGAGGAAGCATGGCGCACGCGTGGGGGGGGCGGGGGCGAGTAGAACTG
ACGCTTCGGTCTTTCTTTCGCCAAGGTCTTGGTCAAGATCTCGAGTCGCG
AGTGCATGCTACTGGCAGACGCACCACCCTAATTCCTTCCTCTATAGCTG
GGGTGGCTCTCTGCATGCGTGCCGGTGGTTGCGCTCACTCTCACCCACGG
CCGTAGTGCTTATGTCGAGGTATGATTGCAGAGGTTGGCGGATATTCTTA
CCTCAGCCCGTGGCGCTGGCTGAGGGCTTAGCCATCGTCGTACCGACGAG
GCTGTGGTGTCGCCCAGCAAACATGAACGTCTTGTTGGGTACTTTCTGCG
ACTGGGGCACCGTCGTCGTATGGACTAGTGGCTGGCGTGTTTGCGCTATG
CTTGCCAATTGGCAACCCTCAATCCGCTTGCACCTCTCCCGCACTTCCCT
CGTCCGCTTTTTTTGTCTCCTTAAACAGCCATTGCTATTTTTGTGTCCAA
CCCTTTCCCTTCAAACAGCAATTTAATCCATCAAAAACCTGCTCGCGAAC
GTCTTGTGCAGAACCAAGAACATCGAAACCTGGGACATGCGCAGGCTGCC
GTCCCGGCCTACGCACGAGCCCCCCCCCGGCTTGCCGTTGCCCCGCCTAC
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11380:4539..5440+

>mRNA_Ecto-sp13_S_contig11380.1211.1 ID=mRNA_Ecto-sp13_S_contig11380.1211.1|Name=mRNA_Ecto-sp13_S_contig11380.1211.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11380:4539..5440+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGCGGGGGAGCGGCGGTAAGCATGGCCCCACTCTCCTCCGAACG
GATGCCTTTCGGCTCCAGTGGCAGCGGTGAACTCTTCGCCGTCGGGTTCG
GCGGGGGCACCGTCGCTGTTTTTGACGCCCGGTGCCACGAGGCCGGCGGG
ATGGTGGGTGGGTTCATTTCGAGGCATCGGTGGCTGAAGCGGCTTCGAAG
TGCCGGGTCATTGCTCATGGCCTCCTACGGCAGAACCAAGAACATCGAAA
CCTGGGACATGCGCAGGCTGCCGTCCCGGCCTACGCACGAGCCCCCCCCC
GGCTTGCCGTTGCCCCGCCTACGC
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