mRNA_Ecto-sp13_S_contig11375.1207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11375.1207.1
Unique NamemRNA_Ecto-sp13_S_contig11375.1207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11375.1207.1 vs. uniprot
Match: A0A6H5L6D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.750e-20
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   19 GKGECDVCGSPMVFEKTRRKGKQAALRFNRDEKRADADDSSSNSDTESGEDSSSSDGG 192
            GKG CD+CGSPMVFEKT RKGKQA L+F+RDEKR DADDSS  SD ESGEDSSSS  G
Sbjct:   21 GKGACDICGSPMVFEKTMRKGKQATLQFHRDEKRTDADDSSRGSDMESGEDSSSSSDG 78
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BLAST of mRNA_Ecto-sp13_S_contig11375.1207.1 vs. uniprot
Match: D7G7L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.860e-12
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 MCHTGDGKGECDVCGSPMVFEKTRRKGKQAALRFNRDEKRADADDSSSNSDTESGEDSSS 180
            +CH  + +G CD+C SPM+FEKTRRKG QA +RF+RDE+RAD  D+  +SD+E GE S S
Sbjct:  113 ICHVANSQGTCDMCDSPMMFEKTRRKGTQATIRFHRDEERAD--DADPSSDSEEGESSGS 170
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BLAST of mRNA_Ecto-sp13_S_contig11375.1207.1 vs. uniprot
Match: A0A6H5JF52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF52_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.790e-8
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 MCHTGDGKGECDVCGSPMVFEKTRRKGKQAALRFNRDEKRADADDSS 141
            +CH  +G+G+CD+C SPM FEKT RKG  A +RF+RDE   +A DSS
Sbjct:   74 ICHASNGQGKCDMCKSPMEFEKTTRKGTHAMIRFHRDETDKNAADSS 120
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BLAST of mRNA_Ecto-sp13_S_contig11375.1207.1 vs. uniprot
Match: D7G7L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.330e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 MCHTGDGKGECDVCGSPMVFEKTRRKGKQAALRFNRDEKRADA 129
            +CH  +G+G+CD+C SPM FEKT RKG  A +RF+RDE   DA
Sbjct:  118 ICHATNGQGKCDMCNSPMEFEKTTRKGTHAMIRFHRDETDKDA 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11375.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6D2_9PHAE4.750e-2079.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L4_ECTSI1.860e-1258.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JF52_9PHAE2.790e-857.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L3_ECTSI6.330e-858.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11375contigEcto-sp13_S_contig11375:3741..5198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_001930.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462595.298744-CDS-Ecto-sp13_S_contig11375:3740..38381681462595.298744-CDS-Ecto-sp13_S_contig11375:3740..3838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11375 3741..3838 +
1681462595.3103135-CDS-Ecto-sp13_S_contig11375:5053..51421681462595.3103135-CDS-Ecto-sp13_S_contig11375:5053..5142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11375 5054..5142 +
1681462595.322194-CDS-Ecto-sp13_S_contig11375:5166..51981681462595.322194-CDS-Ecto-sp13_S_contig11375:5166..5198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11375 5167..5198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11375.1207.1prot_Ecto-sp13_S_contig11375.1207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11375 3741..5198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11375.1207.1

>prot_Ecto-sp13_S_contig11375.1207.1 ID=prot_Ecto-sp13_S_contig11375.1207.1|Name=mRNA_Ecto-sp13_S_contig11375.1207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MCHTGDGKGECDVCGSPMVFEKTRRKGKQAALRFNRDEKRADADDSSSNS
DTESGEDSSSSDGGRWRRWSSRI
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mRNA from alignment at Ecto-sp13_S_contig11375:3741..5198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11375.1207.1 ID=mRNA_Ecto-sp13_S_contig11375.1207.1|Name=mRNA_Ecto-sp13_S_contig11375.1207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11375:3741..5198+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCACACCGGCGACGGGAAGGGTGAGTGCGACGTATGCGGCTCCCC
GATGGTGTTCGAGAAGACGAGAAGGAAGGGCAAGCAGGCCGCGCTACGGT
GAAGTCGCAGTCTCAGGTTGCTCTGGCACAGCAGTGCTTGGTATTCAAGG
ATGGAGTTGGACCGCCTTCGTGGGAAGTTAAGTTTTATGAGGATATAGAA
CAGGGAAGGGGTAGGCAGACCCTTTCCCGAACCAACCCTAACCCACCTTC
CCCGATTGCATGCTTTATCCAAAATGTTGTTTCTTAAATGATAACCCAGT
GAAGGCTTTTGTCAAAAGTGGTGCTGGAATGGCAGGACTTGTTTATCCCG
ACAGCAGCGGAGATGCAACTTTGAGGAGACGTGGAGGACCAATGCGTCTT
CCCCATCCAAGAGGACCACACTAAATACCCTGAAGCGAACACATGTGGGA
TGTCGATGCCCTCCCCCCTGCTTTGCCGTTGGTTGGCTCTTGTGGAAGAT
GTAGACTGCCAACAACGATGATTCTGTTGTATCCGCGCTGATGTTTTTGA
TATGCTTCATCAGCCTGTTGAGAGCTTGGGGATAGACTGTTCCCCGACTT
AAGTCGATAATCGATCCGTGTGGTTTTGACGGGTTTGATGGATGCCCCAC
ACCCCCCTAATCCCTTGGCAGCCACGATCCCAGAGAAAATAAACGTACGT
AGGACATGTTGAAAGGTACCATGGCAGACTGGTGGTCTAGCGGTCATTGT
GCTTCTCAAGCGGACATGAAAATAGGTGCTGCTGCTGCTCACGGGAACCG
CGAAATGACCCACAAGAGAGGACAAGAAGACATGGGACACTGGTGGACAC
CTGCTAAGTTTTTTTGAAGTCCCCGAATGATACGCACGCCTGCAAGAGAG
CCGAATGTGCACGGGAGTCTCGCATGAGGCCCGAAAATCTGTGTCTTGTT
GTTGTTGTTGTTGTTGTTGGTGGTGGTGTTGTCGCTGCTGCTGCTGTTGC
TGTTGTTGCTGCTGCTGCTGTTGCTGCTGTTGTTGTTGTTGTTGTTGTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGTTGTTGTTGATGTTGTT
GTTGTTGCTATTATCTTCACATAGAAAATAGTTCCGATCTCTCTTCCCAG
TACCTTCTCCTGTCCGCACTCGTCTAACACTTGACGCGGTCGTACCGTGG
TCACAGGCTAACTTACTCAAAAAAAGGTATAGGAAAATATAATGGGCCCG
AAGTACAACGCAGCTGTTTTTTCTTGTTCTCGCCGGGACACTTGTTGTTG
CCCGATCGAACAGGTTTAACCGCGACGAGAAACGAGCGGACGCTGACGAC
TCCAGCAGCAACAGCGACACGGAAAGTGGGGAGGATAGCAGCAGCAGCGA
TGGTATGTAACGATGATGATGACGAGGAGGAAGATGGCGACGATGGTCTT
CTAGAATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11375:3741..5198+

>mRNA_Ecto-sp13_S_contig11375.1207.1 ID=mRNA_Ecto-sp13_S_contig11375.1207.1|Name=mRNA_Ecto-sp13_S_contig11375.1207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11375:3741..5198+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCACACCGGCGACGGGAAGGGTGAGTGCGACGTATGCGGCTCCCC
GATGGTGTTCGAGAAGACGAGAAGGAAGGGCAAGCAGGCCGCGCTACGGT
TTAACCGCGACGAGAAACGAGCGGACGCTGACGACTCCAGCAGCAACAGC
GACACGGAAAGTGGGGAGGATAGCAGCAGCAGCGATGGAGGAAGATGGCG
ACGATGGTCTTCTAGAATT
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