mRNA_Ecto-sp13_S_contig11373.1206.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11373.1206.1
Unique NamemRNA_Ecto-sp13_S_contig11373.1206.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.230e-29
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 VQHEMIKAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNLRGIGDYGKAGAAE 168
            VQ EMI+AEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHN+RGIGDYGKAGAAE
Sbjct:   95 VQREMIRAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNMRGIGDYGKAGAAE 150
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: D8LMK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 8.290e-20
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 VQHEMIKAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNLRGIGDYGKAGAAE 168
            +Q EM+KAEQAILGR TD L SY GYGGA KN QGDKL Y+N+ GIG YG+AGA E
Sbjct:    1 MQREMMKAEQAILGRFTDALASYTGYGGAMKNLQGDKLWYNNMLGIGAYGEAGAGE 56
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: A0A7S0ASC4_9STRA (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASC4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.610e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 VQHEMIKAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNLRGIGDYGKAGAAE 168
            VQHE + AEQ ILGRS D+LT+ AGY G +   + D +CYHN RG+GDYG  G AE
Sbjct:   94 VQHEFVVAEQRILGRSEDDLTARAGYAGGRA--KDDLVCYHNARGVGDYGTLGHAE 147
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: A0A6H5JNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-10
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   73 GYGGAKKNFQGDKLCYHNLRGIGDYGKAGAAE 168
            GYGGAK++F GDKLCYHN+RG+GDYGKA A E
Sbjct:    2 GYGGAKRSFLGDKLCYHNMRGMGDYGKADAGE 33
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: A0A8J5XES5_DIALT (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XES5_DIALT)

HSP 1 Score: 59.3 bits (142), Expect = 5.520e-9
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 VQHEMIKAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNLRGIGDYGKAGAAE 168
            VQHE ++ E+++L R+  EL+S  GY       +  K+CYHNLRG+ DYGK G AE
Sbjct:   75 VQHEFVQLERSLLKRADLELSSRCGYAAGSLLGENGKVCYHNLRGVADYGKLGHAE 130
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: A0A7S3TUB4_9SPIT (Peptide-methionine (S)-S-oxide reductase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TUB4_9SPIT)

HSP 1 Score: 53.1 bits (126), Expect = 9.550e-7
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 VQHEMIKAEQAILGRSTDELTSYAGYGGAKKNFQGD-------KLCYHNLRGIGDYGKAGAAE 168
            VQH+++ AEQ++LGR+   +T+  GY G  +   G        K+CYHN  GI DYG  G AE
Sbjct:   70 VQHQLVLAEQSLLGRAGGTITARTGYAGGTRVASGPSAGPAGAKVCYHNPLGIADYGVLGHAE 132
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BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Match: A0A6V2UXD6_EMIHU (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2UXD6_EMIHU)

HSP 1 Score: 50.4 bits (119), Expect = 8.820e-6
Identity = 24/58 (41.38%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    1 VQHEMIKAEQAILGRSTDELTSYAGYGGAKKN--FQGDKLCYHNLRGIGDYGKAGAAE 168
            VQHE +  E A L R  + +T+  GY G       +  K+CYHN +G+ DYG  G AE
Sbjct:   65 VQHEFVGEEVAALQRGPESITARTGYAGGTLGGGLKDGKVCYHNFKGVADYGSLGHAE 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11373.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LMK2_ECTSI6.230e-2994.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMK3_ECTSI8.290e-2071.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0ASC4_9STRA1.610e-1258.93Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
A0A6H5JNI2_9PHAE1.870e-1078.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5XES5_DIALT5.520e-948.21Peptide-methionine (S)-S-oxide reductase n=1 Tax=D... [more]
A0A7S3TUB4_9SPIT9.550e-742.86Peptide-methionine (S)-S-oxide reductase (Fragment... [more]
A0A6V2UXD6_EMIHU8.820e-641.38Peptide-methionine (S)-S-oxide reductase n=3 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11373contigEcto-sp13_S_contig11373:3202..3719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.1
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D8LMK2
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.Peptide methionine sulfoxide reductase
EggNOG OGs2DF2K@1,2RZE5@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003060.1
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462595.2445638-CDS-Ecto-sp13_S_contig11373:3201..33251681462595.2445638-CDS-Ecto-sp13_S_contig11373:3201..3325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11373 3202..3325 -
1681462595.2586317-CDS-Ecto-sp13_S_contig11373:3675..37071681462595.2586317-CDS-Ecto-sp13_S_contig11373:3675..3707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11373 3676..3707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462595.2733588-UTR-Ecto-sp13_S_contig11373:3707..37191681462595.2733588-UTR-Ecto-sp13_S_contig11373:3707..3719Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11373 3708..3719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11373.1206.1prot_Ecto-sp13_S_contig11373.1206.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11373 3202..3707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11373.1206.1

>prot_Ecto-sp13_S_contig11373.1206.1 ID=prot_Ecto-sp13_S_contig11373.1206.1|Name=mRNA_Ecto-sp13_S_contig11373.1206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MIKAEQAILGRSTDELTSYAGYGGAKKNFQGDKLCYHNLRGIGDYGKAGA
AE
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mRNA from alignment at Ecto-sp13_S_contig11373:3202..3719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11373.1206.1 ID=mRNA_Ecto-sp13_S_contig11373.1206.1|Name=mRNA_Ecto-sp13_S_contig11373.1206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11373:3202..3719- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAGCATGAGATGATCAAGGCAGAGCAGGCTATCCTCGGCAGGTTCGT
GATACGCTAACGTGCTTGCCTCCTTTGTGACTGGCCCCGATCTGACAGTT
TTTATTTCCACACTTCGTTTTTTCCGCCACCGTTGACTTCTGCTTACCTC
CAACTTGTTTGATTGCCTTACCCGTCTTGCAGCCATTTGTTCTTAACCAG
TGCGGGACTAATGGCTCACGTTTTCTGTTGCTGTGGCCGTTGGCCGGTGA
ATAGCCTGGTGCTTGTTCAAACCCGAGATACGCGAACTATTGGGGTCCTG
GCCCAAATGGATGCTGCAGCCCCTACACATACAATCAAGATAGGGATACC
CGTGCACTTTCGGCCTGCTTTCTTTCCTCTACATCGCTCTGTAGGTCCAC
CGATGAGCTGACTTCCTACGCGGGCTACGGTGGGGCGAAGAAAAACTTCC
AAGGGGACAAGCTGTGTTACCACAACTTGCGAGGAATCGGCGACTACGGC
AAGGCCGGGGCCGCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11373:3202..3719-

>mRNA_Ecto-sp13_S_contig11373.1206.1 ID=mRNA_Ecto-sp13_S_contig11373.1206.1|Name=mRNA_Ecto-sp13_S_contig11373.1206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11373:3202..3719- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAAGGCAGAGCAGGCTATCCTCGGCAGGTCCACCGATGAGCTGAC
TTCCTACGCGGGCTACGGTGGGGCGAAGAAAAACTTCCAAGGGGACAAGC
TGTGTTACCACAACTTGCGAGGAATCGGCGACTACGGCAAGGCCGGGGCC
GCAGAG
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